Gene
| Gene Model ID | habu1_s3012_g10716 |
|---|---|
| Locus | habu1_scaffold3012 : 32336 ... 41840 : + |
| To GenomeBrowser | habu1_scaffold3012:32336..41840 |
| Genes list of scaffold | habu1_scaffold3012 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tubulin beta-2a chain | GO:0003924 GO:0005200 GO:0005525 GO:0005634 GO:0005737 GO:0005874 GO:0007017 GO:0051084 GO:0051258 GO:0055085 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3012_g10716.t1 | 1 | 1 | Misat_Tub_SegII | 2 | 71 | 6.1e-06 | 26.2 | 3.9e-09 | 1.4e-05 | 25.0 |
| habu1_s3012_g10716.t1 | 1 | 1 | Tubulin | 3 | 222 | 0.0 | 236.7 | 0.0 | 0.0 | 236.1 |
| habu1_s3012_g10716.t1 | 1 | 1 | Tubulin_C | 261 | 382 | 0.0 | 171.3 | 0.0 | 0.0 | 170.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3012_g10716.t1 | gi|591368093|ref|XP_007058893.1| | PREDICTED: tubulin beta-2 chain-like isoform X3 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.5 |
| Venom grand-1 | 1.5 |
| Pit, infrared sensing | 7.1 |
| Nose | 22.8 |
| Brain-1 | 37.0 |
| Eye | 9.2 |
| fetal fibroblast | 5.7 |
| venom gland-2 | 2.1 |
| Brain-2 | 97.4 |
| Spleen | 1.3 |
| Lung | 2.7 |
| Liver | 0.5 |
| Kidney | 53.4 |
| Pancreas | 3.5 |
| Small intestine | 0.3 |
| Large intestine | 1.3 |
| Stomach | 1.8 |
| heart | 2.1 |
| ovary | 168.0 |
| cheek muscle | 2.2 |
Transcript
| Transcript ID | habu1_s3012_g10716.t1 |
|---|---|
| Definition | - |
>habu1_s3012_g10716.t1 gttgccagctgctgaggctcggcgcggagagcggcgctcctgaaggtagtcagtgggtgggggaagctcgaagcgaagcg cacattcgccgcagccatgcgtgagatcgtgcatatccaagccggccaatgcgggaaccagatcggagccaagttctggg aggtcatcagcgatgagcatggcattgaccccaccggcagctaccacggagacagcgacctgcagctggagaggatcaat gtctactacaatgaagcagctggaaataagtatgttccccgcgcaatcctcgttgacctggagccgggcacaatggactc agtcaggtctggacctttcggccagatctttagacctgataactttgtctttggccagagtggtgctgggaacaactggg ccaaaggccactacacagagggagctgagctagtggattcagtgctggatgtagtaaggaaggagtctgaaagctgtgat tgcttacagggcttccaactcacccactcgttgggtgggggcactggatctggcatgggaacgcttctcatcagcaagat tagggaggaatatcctgataggatcatgaacaccttcagtgtaatgccatctccaaaagtgtcagacacagtggttgagc catacaatgccaccctctctgttcaccagttggtagagaacacagatgaaacctactctattgacaatgaggctctgtat gacatctgcttccgcacattgaaactcacaactccaacctacggcgatctcaaccacttggtatctgccaccatgagcgg agtgaccacctgcctccgattccctggccaactgaacgcagaccttcgcaagctggcagtcaacatggtgcctttccctc gcctgcacttcttcatgcccggctttgctcccttgacgagtcgtggcagccaacaatatcgtgccctgacggtcccggag ctgactcaacagatgtttgattcaaaaaacatgatggcggcctgtgacccccgccacggccgatacctgacggtggcagc tatcttccggggcagaatgtccatgaaggaggtggatgagcagatgctgaacgtccagaacaagaacagcagctactttg tggaatggatccccaacaacgtgaagacggccgtgtgtgacattcctccccgaggcctgaagatgtctgccaccttcatc ggcaacagcaccgcaatccaggagctcttcaagagaatctctgagcagttcacagccatgtttcggcggaaggctttctt gcactggtacaccggcgaaggcatggatgagatggagttcacggaagccgagagcaacatgaatgacctggtctccgagt accagcagtatcaagatgccactgcagatgagcaaggggagtttgaggaggaaggagaggaggacgaggcttagaggttt tgagtagggttagtccataggcaagtgtccaaggtgaatctgggcaataaagtatttattgaaacttatgcgg |
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Protein
| Protein ID | habu1_s3012_g10716.t1 |
|---|---|
| Definition | - |
>habu1_s3012_g10716.t1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGR MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEGEEDEA |
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