Gene
| Gene Model ID | habu1_s304_g01434 |
|---|---|
| Locus | habu1_scaffold304 : 197296 ... 233865 : + |
| To GenomeBrowser | habu1_scaffold304:197296..233865 |
| Genes list of scaffold | habu1_scaffold304 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| isoleucine--trna mitochondrial | EC:6.1.1.5 GO:0002161 GO:0004822 GO:0005524 GO:0005739 GO:0006428 GO:0006450 GO:0009097 GO:0009098 GO:0009099 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s304_g01434.t3 | 1 | 1 | tRNA-synt_1 | 77 | 688 | 0.0 | 579.0 | 0.0 | 0.0 | 578.7 |
| habu1_s304_g01434.t3 | 2 | 1 | tRNA-synt_1g | 96 | 238 | 8.5e-28 | 97.1 | 1.0e-20 | 2.2e-17 | 62.8 |
| habu1_s304_g01434.t3 | 1 | 1 | tRNA-synt_1_2 | 332 | 400 | 1.2e-06 | 27.9 | 1.1e-09 | 2.2e-06 | 27.0 |
| habu1_s304_g01434.t3 | 2 | 2 | tRNA-synt_1g | 449 | 514 | 8.5e-28 | 97.1 | 9.3e-08 | 0.0002 | 20.1 |
| habu1_s304_g01434.t3 | 1 | 1 | Anticodon_1 | 735 | 845 | 1.2e-25 | 90.0 | 1.6e-28 | 3.4e-25 | 88.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s304_g01434.t3 | gi|591380567|ref|XP_007064826.1| | PREDICTED: isoleucine--tRNA ligase, mitochondrial [Chelonia mydas] | 0.0 |
| habu1_s304_g01434.t3 | gi|564268360|ref|XP_006272973.1| | PREDICTED: isoleucine--tRNA ligase, mitochondrial [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.4 |
| Venom grand-1 | 11.0 |
| Pit, infrared sensing | 10.6 |
| Nose | 10.0 |
| Brain-1 | 7.7 |
| Eye | 8.9 |
| fetal fibroblast | 26.0 |
| venom gland-2 | 16.5 |
| Brain-2 | 9.1 |
| Spleen | 9.9 |
| Lung | 9.7 |
| Liver | 20.1 |
| Kidney | 16.2 |
| Pancreas | 15.2 |
| Small intestine | 13.3 |
| Large intestine | 11.4 |
| Stomach | 15.0 |
| heart | 23.7 |
| ovary | 14.0 |
| cheek muscle | 57.7 |
Transcript
| Transcript ID | habu1_s304_g01434.t1 |
|---|---|
| Definition | - |
>habu1_s304_g01434.t1 gtgcaagaatcaaaatgaagagcactcttaatagatcaggttctgtattactgaaaattattgggaagcagatacatata aactcaagtgtggccacttaaggcagatggggaactttaattcatagaaatcgtttccttgatcagagacaaatattggt gtgcaatctaatgaattaacctcaatatctgcatcagctgaagtttctgagttgtcttcaaacaagcccacataaaattt taacccttattcttagctttatgtagtacaatgctgcaactattacagagctatctaatgcatttgttttccccaccctt ctcttttgcaagagtcggatagcgtgtttcgttccggatggatgaccacaagtgctgtctggaagaagccaggcctggaa gaagcagtggatggagcatgcacaatgagagatggtttccttggctttattgcaggcaaaaatgctgcggaatatcaggt gattctggtgattgagcctgggctgttctttgaattaatggaggtgctgcaacctgaggagtgctctagtacatctcagt taaatgaaataatgatggcatcacagacaatgctgctgactgaagtacctagagatgtgaatactgacgatatgattaaa ggcacatttctgataaacttagaaggtggcgatatccgagaggagtctgcctataaagtcattgttctaccagctgccaa atcaaagtgccctcgttgtcgaaaatacactgctgattcagcagagactccatgtgcacgctgtatgcaaatacttggtg agaaatgatgcctgttcccatagcggtcaaatagtcgggcctgctaaagcaagattcatattttgtgaaaacctggaata tagaagtatctacacagaaaccaatatgttgtttctccgagagctggaaagctaactttaaaattcacgtgtatatattt aagcttgtacacttaataaactgcttactaaaatgcctgacagtctttttctttctaagtctgaaaagcagcacaggagg aattcagatccatgaataagctggctttttttagttcggttgactttagactttagcacttaggtggtgcagctttattg cagttcatggacctgcatgaaccttttttctgtagttacttccaacacaatcaaccctgcccccctccccacgcagatca cgtatcaataagaaaaaagtatgtggaactttcatcctggtctagatttctcaatcataattaagaaattactttcttaa gtaactatgtttgcaactgtatagtgataggtatgggtggatggctcttcctttggttttgaaaattgtagcagcctttt aatgagacactcatctgatccagttgtcaacaattttctacagaacaggtgagagttcagtattcaattaattactcact gtgattgctaacatttgaagaatgatatactattttacaaagtctccactcgccctttacaacagacaaatggaaggatt ttcatgagtttggttctatcacccagtcccattgaatttcagacaactccgttacaataactgaaggactactatagcct cttttttttccagaccaaagctacccagttgcttcaactattctatgctaacttcagcactccctcgtccaaggcttttc aaccttggcaactttagatacacaaacttcaactcccagagttccccatctagcatgctggttagggattttaagttaag ccatgcttcttaaaatcagtccaatttctcaatgttaacactgtcagatattgaaatagttgtggggcaaatataaaatt caacatagggaagacatttgaatataccaaattacagtaagcctgtacagcaggggtcttcaaacttggcccttttacga cttgtgaacattgctggctgaggaattctgggagttgaaatccacaagtcataaaagggccaagttggaagacccctgct gtacagcaaggaaagttgttacaaatgagaccaatgcttttacagaagtgataaactaaaactagattccagattttatt tgatacttaaaacatgaagaggcagcatctttctttttgttctacaatgataatttttcccactggacgacttgctcttc ataagttgatactgtttttatagtgaaaattcagccataatgtaattgtagaaagtcatcctttaatgctataacttgat taaatgtaattaggctattgcctcttgattaaatgtaattaggctatcactttgaagaagtattacctaaccagcataca taatatgtaagagctctgatttcttggcttctgattgaattcatcttgctttaacatttaaaaagcagtctattttctac catataggaaattcttaacatttgaacagcactaaattgttcttaagcaaactattacacaaatgcttggtattagaaat aaatatttagagttatacacaaata |
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| Transcript ID | habu1_s304_g01434.t2 |
| Definition | - |
>habu1_s304_g01434.t2 cgccgcggcgtttccggaagtgcccgtggaaccgagtgcccgcgatgtgggtgctgcgggcccagccgttgcttaggttt cctaagcatgttggacgttgggcccgcgggacggtgtccgcaggacccagcgcgggccaaaaggcgaagccggattccaa ataccgtgaaacgattttattgccccaaagcgaattccccagccagttgcctggccgcctgcagcccgaaactgaattgg agatacagcagaaatgtggcttttcagaactgtattcttggcaaagacaaaggaaaacaaagcaagaattttgtcttcat gatggaccaccatatgccaatggagacccacatgttggccatgctttgaataaaattttgaaagacatcacaaatcggtt ccatgtgatgaatggctataaagtgcactatgtccctggatgggattgccatgggttacccattgagttgaaagcattat cagaatatggagaaacaaaacatcttacaccaatggaaatcagaaagaaagccaaagcatttgcagaaaaggtaattgag aaacagaaatcagcatttatgcgctggggcgtaatggcagattgggagaactgctactgcacatttgatccaaagtatga agcaaaacagttgagagttttccaccaaatgtatgaaaagggttttatttatcaagactacaagccagtgttttggtctc cttcaacaaatacagctttggctgaagcagaacttgaatacaaccagcaacatactagtcgagctgtttatatcagattt cccttgctgaaaccccctcccaaactagcctctgcagtagatggattaactgcagtgagtttgatagtctggaccaccca gccctggactattgcagccaatcaagctgtctgttatatgccaaatctggagtattccattgtgaagtgtgccagtactg gggagcactttatagtaattgcagacagagttcagtctatagcagctgttttggatacacagtttgatgtgatttcaaca tttaaaggtacagatttggaaagtggaatttgttcccatccaacaattcctggaaggcagtctcctcttttgcctgcaaa ccatgtgaccatgtcaaaaggaacaggattagtgcatacagctccagctcatggtatggaagattacagtgtagcttctc atcatcaactgcccatggactgtctggtagatgaagaagggcttttcacagaagctgcaggttcagagctccaaaagaaa gctgttcttggagaaggaaatgagactgttattgagatgcttcaagcagcaaagaatttattgaaagaagaaaaacatgt acacagctatccttatgaatggaggactaaaaaacctgtgattattcgggccagcaaacagtggttcattaatacagaga atctcaagactgctgctcaggaagcattaaagaaagtaaaaactgtcccagcctcaggaatgaacagaatgctagaaatg ttggaaagacgaacctattggtgcatatcaagacagaggcgctggggtgtccctattccagttttttaccataagtcaac agaggagcctttaataaacaaaaaaagcactgagaatgttattaaactagtggagcaacatggcagtgatgcctggtgga cacttcccattgaacagcttcttcccaaagaagctctggcaaaggctgctaatcctgatatccaggaatatgtacaagga caagatgtgttggatatttggtttgacagtggaacatcttgggctcatgttttagaagatacaggtgaaagagctgatgt atacttggaaggaaaagaccagctgggaggttggttccagtcgtccctcttgattagcgtagcaacacgaaaaaaggcac catataggactctcattattcatggattcactgttggtgaaaaaggagaaaagatgtctaaatctgtcggcaatgtggtt gatccagatgttgtcatcaatggaggcagtgaccacagcactgagccaccatacggggctgatactttacgctggtgggt ggctgagtccaatgtttacacagaagtgcaaattggacctactgtgctcagttctgctcatgatgatattaacaagcttc gaaatacacttcgttttttgttgggcaatctggctggcttcagtcctgagacagactcaatccccacatcagagatgtat ctgatagaccagtatatactccatctactgcatggcttcgctaccaaggttacacaggcatataaggaacatgactatgg aaaagtcatacgattacttcaagccttttgtagtaaagatctctccagtttttattttagtataattaaggacagacttt attgtgaagaggaaaaagatcctaaacgccgttcgtgtcaaacagccttggctgcagttttggatacagtggttcgttct tttgcaccgatccttccacatctgtctgaagaggtgttccagtatattccatacagaaaagagtcggatagcgtgtttcg ttccggatggatgaccacaagtgctgtctggaagaagccaggcctggaagaagcagtggatggagcatgcacaatgagag atggtttccttggctttattgcaggcaaaaatgctgcggaatatcaggtgattctggtgattgagcctgggctgttcttt gaattaatggaggtgctgcaacctgaggagtgctctagtacatctcagttaaatgaaataatgatggcatcacagacaat gctgctgactgaagtacctagagatgtgaatactgacgatatgattaaaggcacatttctgataaacttagaaggtggcg atatccgagaggagtctgcctataaagtcattgttctaccagctgccaaatcaaagtgccctcgttgtcgaaaatacact gctgattcagcagagactccatgtgcacgctgtatgcaaatacttggtgagaaatgatgcctgttcccatagcggtcaaa tagtcgggcctgctaaagcaagattcatattttgtgaaaacctggaatatagaagtatctacacagaaaccaatatgttg tttctccgagagctggaaagctaactttaaaattcacgtgtatatatttaagcttgtacacttaataaactgcttactaa aatgcctgacagtctttttctttctaagtctgaaaagcagcacaggaggaattcagatccatgaataagctggctttttt tagttcggttgactttagactttagcacttaggtggtgcagctttattgcagttcatggacctgcatgaaccttttttct gtagttacttccaacacaatcaaccctgcccccctccccacgcagatcacgtatcaataagaaaaaagtatgtggaactt tcatcctggtctagatttctcaatcataattaagaaattactttcttaagtaactatgtttgcaactgtatagtgatagg tatgggtggatggctcttcctttggttttgaaaattgtagcagccttttaatgagacactcatctgatccagttgtcaac aattttctacagaacaggtgagagttcagtattcaattaattactcactgtgattgctaacatttgaagaatgatatact attttacaaagtctccactcgccctttacaacagacaaatggaaggattttcatgagtttggttctatcacccagtccca ttgaatttcagacaactccgttacaataactgaaggactactatagcctcttttttttccagaccaaagctacccagttg cttcaactattctatgctaacttcagcactccctcgtccaaggcttttcaaccttggcaactttagatacacaaacttca actcccagagttccccatctagcatgctggttagggattttaagttaagccatgcttcttaaaatcagtccaatttctca atgttaacactgtcagatattgaaatagttgtggggcaaatataaaattcaacatagggaagacatttgaatataccaaa ttacagtaagcctgtacagcaggggtcttcaaacttggcccttttacgacttgtgaacattgctggctgaggaattctgg gagttgaaatccacaagtcataaaagggccaagttggaagacccctgctgtacagcaaggaaagttgttacaaatgagac caatgcttttacagaagtgataaactaaaactagattccagattttatttgatacttaaaacatgaagaggcagcatctt tctttttgttctacaatgataatttttcccactggacgacttgctcttcataagttgatactgtttttatagtgaaaatt cagccataatgtaattgtagaaagtcatcctttaatgctataacttgattaaatgtaattaggctattgcctcttgatta aatgtaattaggctatcactttgaagaagtattacctaaccagcatacataatatgtaagagctctgatttcttggcttc tgattgaattcatcttgctttaacatttaaaaagcagtctattttctaccatataggaaattcttaacatttgaacagca ctaaattgttcttaagcaaactattacacaaatgcttggtattagaaataaatatttagagttatacacaaata |
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| Transcript ID | habu1_s304_g01434.t3 |
| Definition | - |
>habu1_s304_g01434.t3 cgccgcggcgtttccggaagtgcccgtggaaccgagtgcccgcgatgtgggtgctgcgggcccagccgttgcttaggttt cctaagcatgttggacgttgggcccgcgggacggtgtccgcaggacccagcgcgggccaaaaggcgaagccggattccaa ataccgtgaaacgattttattgccccaaagcgaattccccagccagttgcctggccgcctgcagcccgaaactgaattgg agatacagcagaaatgtggcttttcagaactgtattcttggcaaagacaaaggaaaacaaagcaagaattttgtcttcat gatggaccaccatatgccaatggagacccacatgttggccatgctttgaataaaattttgaaagacatcacaaatcggtt ccatgtgatgaatggctataaagtgcactatgtccctggatgggattgccatgggttacccattgagttgaaagcattat cagaatatggagaaacaaaacatcttacaccaatggaaatcagaaagaaagccaaagcatttgcagaaaaggtaattgag aaacagaaatcagcatttatgcgctggggcgtaatggcagattgggagaactgctactgcacatttgatccaaagtatga agcaaaacagttgagagttttccaccaaatgtatgaaaagggttttatttatcaagactacaagccagtgttttggtctc cttcaacaaatacagctttggctgaagcagaacttgaatacaaccagcaacatactagtcgagctgtttatatcagattt cccttgctgaaaccccctcccaaactagcctctgcagtagatggattaactgcagtgagtttgatagtctggaccaccca gccctggactattgcagccaatcaagctgtctgttatatgccaaatctggagtattccattgtgaagtgtgccagtactg gggagcactttatagtaattgcagacagagttcagtctatagcagctgttttggatacacagtttgatgtgatttcaaca tttaaaggtacagatttggaaagtggaatttgttcccatccaacaattcctggaaggcagtctcctcttttgcctgcaaa ccatgtgaccatgtcaaaaggaacaggattagtgcatacagctccagctcatggtatggaagattacagtgtagcttctc atcatcaactgcccatggactgtctggtagatgaagaagggcttttcacagaagctgcaggttcagagctccaaaagaaa gctgttcttggagaaggaaatgagactgttattgagatgcttcaagcagcaaagaatttattgaaagaagaaaaacatgt acacagctatccttatgaatggaggactaaaaaacctgtgattattcgggccagcaaacagtggttcattaatacagaga atctcaagactgctgctcaggaagcattaaagaaagtaaaaactgtcccagcctcaggaatgaacagaatgctagaaatg ttggaaagacgaacctattggtgcatatcaagacagaggcgctggggtgtccctattccagttttttaccataagtcaac agaggagcctttaataaacaaaaaaagcactgagaatgttattaaactagtggagcaacatggcagtgatgcctggtgga cacttcccattgaacagcttcttcccaaagaagctctggcaaaggctgctaatcctgatatccaggaatatgtacaagga caagatgtgttggatatttggtttgacagtggaacatcttgggctcatgttttagaagatacaggtgaaagagctgatgt atacttggaaggaaaagaccagctgggaggttggttccagtcgtccctcttgattagcgtagcaacacgaaaaaaggcac catataggactctcattattcatggattcactgttggtgaaaaaggagaaaagatgtctaaatctgtcggcaatgtggtt gatccagatgttgtcatcaatggaggcagtgaccacagcactgagccaccatacggggctgatactttacgctggtgggt ggctgagtccaatgtttacacagaagtgcaaattggacctactgtgctcagttctgctcatgatgatattaacaagcttc gaaatacacttcgttttttgttgggcaatctggctggcttcagtcctgagacagactcaatccccacatcagagatgtat ctgatagaccagtatatactccatctactgcatggcttcgctaccaaggttacacaggcatataaggaacatgactatgg aaaagtcatacgattacttcaagccttttgtagtaaagatctctccagtttttattttagtataattaaggacagacttt attgtgaagaggaaaaagatcctaaacgccgttcgtgtcaaacagccttggctgcagttttggatacagtggttcgttct tttgcaccgatccttccacatctgtctgaagaggtgttccagtatattccatacagaaaaggtatgagttataaaacggt taagaaaacagacactctgcattgtgtctagagattcttcacataaacctcataatgtgttgaattcgttagtcatataa tttacatttgtgttgtaaaaaatagaacgatcaataaatattaattaaattaattagtcattaaaattcttagctgtagg atgaaatctgcatgtacacatttttaaaaagaattatatgaaatgatgtctgacagctcagtgttgaagcaatccaaata agggacaagatactcagttctgcttcccttctagtcacactagtaccttaataaagtaattgtccatgcaagtttgc |
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Protein
| Protein ID | habu1_s304_g01434.t1 |
|---|---|
| Definition | - |
>habu1_s304_g01434.t1 MTTSAVWKKPGLEEAVDGACTMRDGFLGFIAGKNAAEYQVILVIEPGLFFELMEVLQPEECSSTSQLNEIMMASQTMLLT EVPRDVNTDDMIKGTFLINLEGGDIREESAYKVIVLPAAKSKCPRCRKYTADSAETPCARCMQILGEK |
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| Protein ID | habu1_s304_g01434.t2 |
| Definition | - |
>habu1_s304_g01434.t2 MWVLRAQPLLRFPKHVGRWARGTVSAGPSAGQKAKPDSKYRETILLPQSEFPSQLPGRLQPETELEIQQKCGFSELYSWQ RQRKTKQEFCLHDGPPYANGDPHVGHALNKILKDITNRFHVMNGYKVHYVPGWDCHGLPIELKALSEYGETKHLTPMEIR KKAKAFAEKVIEKQKSAFMRWGVMADWENCYCTFDPKYEAKQLRVFHQMYEKGFIYQDYKPVFWSPSTNTALAEAELEYN QQHTSRAVYIRFPLLKPPPKLASAVDGLTAVSLIVWTTQPWTIAANQAVCYMPNLEYSIVKCASTGEHFIVIADRVQSIA AVLDTQFDVISTFKGTDLESGICSHPTIPGRQSPLLPANHVTMSKGTGLVHTAPAHGMEDYSVASHHQLPMDCLVDEEGL FTEAAGSELQKKAVLGEGNETVIEMLQAAKNLLKEEKHVHSYPYEWRTKKPVIIRASKQWFINTENLKTAAQEALKKVKT VPASGMNRMLEMLERRTYWCISRQRRWGVPIPVFYHKSTEEPLINKKSTENVIKLVEQHGSDAWWTLPIEQLLPKEALAK AANPDIQEYVQGQDVLDIWFDSGTSWAHVLEDTGERADVYLEGKDQLGGWFQSSLLISVATRKKAPYRTLIIHGFTVGEK GEKMSKSVGNVVDPDVVINGGSDHSTEPPYGADTLRWWVAESNVYTEVQIGPTVLSSAHDDINKLRNTLRFLLGNLAGFS PETDSIPTSEMYLIDQYILHLLHGFATKVTQAYKEHDYGKVIRLLQAFCSKDLSSFYFSIIKDRLYCEEEKDPKRRSCQT ALAAVLDTVVRSFAPILPHLSEEVFQYIPYRKESDSVFRSGWMTTSAVWKKPGLEEAVDGACTMRDGFLGFIAGKNAAEY QVILVIEPGLFFELMEVLQPEECSSTSQLNEIMMASQTMLLTEVPRDVNTDDMIKGTFLINLEGGDIREESAYKVIVLPA AKSKCPRCRKYTADSAETPCARCMQILGEK |
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| Protein ID | habu1_s304_g01434.t3 |
| Definition | - |
>habu1_s304_g01434.t3 MWVLRAQPLLRFPKHVGRWARGTVSAGPSAGQKAKPDSKYRETILLPQSEFPSQLPGRLQPETELEIQQKCGFSELYSWQ RQRKTKQEFCLHDGPPYANGDPHVGHALNKILKDITNRFHVMNGYKVHYVPGWDCHGLPIELKALSEYGETKHLTPMEIR KKAKAFAEKVIEKQKSAFMRWGVMADWENCYCTFDPKYEAKQLRVFHQMYEKGFIYQDYKPVFWSPSTNTALAEAELEYN QQHTSRAVYIRFPLLKPPPKLASAVDGLTAVSLIVWTTQPWTIAANQAVCYMPNLEYSIVKCASTGEHFIVIADRVQSIA AVLDTQFDVISTFKGTDLESGICSHPTIPGRQSPLLPANHVTMSKGTGLVHTAPAHGMEDYSVASHHQLPMDCLVDEEGL FTEAAGSELQKKAVLGEGNETVIEMLQAAKNLLKEEKHVHSYPYEWRTKKPVIIRASKQWFINTENLKTAAQEALKKVKT VPASGMNRMLEMLERRTYWCISRQRRWGVPIPVFYHKSTEEPLINKKSTENVIKLVEQHGSDAWWTLPIEQLLPKEALAK AANPDIQEYVQGQDVLDIWFDSGTSWAHVLEDTGERADVYLEGKDQLGGWFQSSLLISVATRKKAPYRTLIIHGFTVGEK GEKMSKSVGNVVDPDVVINGGSDHSTEPPYGADTLRWWVAESNVYTEVQIGPTVLSSAHDDINKLRNTLRFLLGNLAGFS PETDSIPTSEMYLIDQYILHLLHGFATKVTQAYKEHDYGKVIRLLQAFCSKDLSSFYFSIIKDRLYCEEEKDPKRRSCQT ALAAVLDTVVRSFAPILPHLSEEVFQYIPYRKGMSYKTVKKTDTLHCV |
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