Gene
| Gene Model ID | habu1_s304_g01435 |
|---|---|
| Locus | habu1_scaffold304 : 233984 ... 287035 : - |
| To GenomeBrowser | habu1_scaffold304:233984..287035 |
| Genes list of scaffold | habu1_scaffold304 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rab3 gtpase-activating protein non-catalytic subunit isoform x2 | GO:0005737 GO:0005886 GO:0017112 GO:0017137 GO:0043087 GO:0043234 GO:0097051 GO:1903373 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s304_g01435.t1 | 1 | 1 | RAB3GAP2_N | 77 | 507 | 0.0 | 509.3 | 0.0 | 0.0 | 508.8 |
| habu1_s304_g01435.t1 | 1 | 1 | RAB3GAP2_C | 776 | 1370 | 0.0 | 730.9 | 0.0 | 0.0 | 730.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s304_g01435.t1 | gi|327262452|ref|XP_003216038.1| | PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s304_g01435.t1 | gi|637257532|ref|XP_008124070.1| | PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s304_g01435.t1 | gi|530640470|ref|XP_005306998.1| | PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s304_g01435.t1 | gi|641791555|ref|XP_008177289.1| | PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s304_g01435.t1 | gi|530640472|ref|XP_005306999.1| | PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X3 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.3 |
| Venom grand-1 | 6.5 |
| Pit, infrared sensing | 5.7 |
| Nose | 6.0 |
| Brain-1 | 8.1 |
| Eye | 7.5 |
| fetal fibroblast | 9.3 |
| venom gland-2 | 11.1 |
| Brain-2 | 9.8 |
| Spleen | 8.3 |
| Lung | 6.5 |
| Liver | 8.1 |
| Kidney | 8.5 |
| Pancreas | 13.9 |
| Small intestine | 10.9 |
| Large intestine | 8.5 |
| Stomach | 10.9 |
| heart | 9.2 |
| ovary | 26.2 |
| cheek muscle | 14.5 |
Transcript
| Transcript ID | habu1_s304_g01435.t1 |
|---|---|
| Definition | - |
>habu1_s304_g01435.t1 tccgggtggggttggcagtcctgctcgcgactcgggtgagcctgcggggcttcgggcgcggaaaccgggcgacgccatgg cctgcactctcgtgcctttctgcagcttccaggacctcgagtcggcgcgggatttcctgtgctctcatcttcggcagagt ggctcgggggaaccgtggggggccaaggaatgcggcggtaaatcatcaaactgggaagaagagaattggggttcctggga tgaagcagaaactcaagaccctgaagaagaagaagacttaacatctaaaacacaaacaaattcctggcttcaggactgtg taatatcgttgtcacccacaaatgatctcatggtaatagctcgtgagcagaaagcagtgttttttgtcccaaaatggaaa cagaatgaaaaagggaaagaagaaatgcaatttgcagttggctggagtggctcgcttggctggaatggcccttgcggtgt tgaagaaattgaatgtgtaaccagtgcattgtgtatccctcttgcaagtcaaaagaggagctcaacaggccgtcctgact ggacctgcattgttgtaggattcacctctggctatgtccgcttctatactgagagtggagtattacttctggcacagctt ttaaatgaagatcctgtcctacagctgaaatgtagaacttatgagattccacgtcatcctggagtaacagaacagaatga ggaactgagcatcctgtatccttcagcaattgtgacaattgaaggttttagcttatttcaatctctccgggcttgtcgaa atcaagtagccagggctacagcttcaggcaatgaaaatgttcagccacctccattagcctataagaaatggggtttgcag gatgtggatactattgttgatcatattagtgttggtatcatgactctatcaccttttgatcaaatgaagactgcttccac tattggcggatttaatgcagctataaagaacaatcctcctgctatgtctcagtatattactgtggggtctaatcctttca ctggattcttctatgcccttgaggggagttcacagccattactgtcccatgttgctttcacagttgcaagtaagctgaca tctgcattctttaatgctgctagtggctggcttggctggaaaaacaaacaggaagaagatcctgtacagaagcagaaacc caaggttgaacctgcaactcctttacctgtgaggtttggaatcccagattctcgtcgacatggagaaaggatatgtttgt ctccttgtaattctttagcagcaattactgatgattttggaagagttcttctattggatgttgtaagaggtctttctgtt cgtatgtggaaaggctatcgtgatgcacaggttggctggattcagattgcagaagacctacatgaaagagaatctattaa gatagacttttctccaactagtacccctcagggaccaagcagagtggctcagttccttgtgatttatgctcctaggagag ggattttggaagtatggagtacccaacaaggtccaagggttggagccttcaatgtaggaaaacattgcaggttgctgtat ccaggctataaaataatggggttgaacagcgtaacaagtcagggttggcagcctcagacttatcagatctgccttgttga cccagtatcaggaacagtaaaaacagttcacatacctttccatttagccctgagcgacaagaagagtgagcgagcaaagg atatgcatctattgaagaaattggcagccttgctgaaagctaaaacattgaatttggatacggttgaggttgaagtaaag gaattaatactggatgttaaatatcctgctactaaaaaacaggctttagaaagcatcctggcaaatgagcgcttgccgtt atcttttctgatgaacatcacacaaacactgatggagaccttaaaaaatcaggagatggattatattgatgaagggctgc tacagttctgtacaaataaactaaaactgctgcagcttcacaagtcagtcagcgatttaaattcgcagactatgcagcct gagacagagccatctgataacatcttggctaaactactccggttagatgaaaaagaattcactcggctccagatgttact tgagaggtacaaacagcagaatacccagccttcagtacattttgtggaggatgaagatggaatgctgcctgtgaaaactt tcttggattacttggattatgaaaaagatgcaattaatgtgaaaaaactagatgacaaggaatacgtggctttaggaggt ttttttttctggaaatgtttacatggagaaagttcaatagaagaaatgtgtcaaactctggagtctgcaggatttagccc ccagatattattgtctcttctgctcagtgtgtggctttccaaggaaaagaccgttcttcaaagagcccagtccatttgct gccttcaagctgcgttatcccttctgagcaaaatgacagaggtttcatgggattctcagtccgtttccccctggtggcag cagatgagaacagcctgtattcagtctgagaataacggcgctgctttggtatttgcgcatgttgggcattcagtaacagc acagataagtgatagcgttgcagaaaaaaagtttccccaaataactgtaggtgctgatacagaatcctgggaagccctct ctcttgatatagaatactggaagcttctcctgaaacagttagaggattgcctaatacttcagacacttctgaatagtaaa gtgagcaagaagacaagcccagcttcttctttgcaggctgagcccctcgggagactttctgtaaagaagttgcttgaagg aggaaaaggaggcattgctgacagtgtagccaaatggatttttaagcaagacctcagtttgtccttactcagattaggtc gacagaaaaatgaagcagaaagcaaggaggaaccacagcagactgacagcaattttgtaggtgaggatgaagaagaccag ccaagcatgaagcccatattagaactactccgtttagcatatgaacagtttccttgcagcctggagatggatgtactcca tgcacattcctgctgggagtatgttgtacagtggaacaaagacccagaggaagcatgttttctcataagatccatagaac atctcggatgcattgataatgctcatattcaacatggaattgctctaatgatgtggaacacattcatagtgaaaaggctt tctgctgctacctacttaatggacaaggttggaaaagcaccaaaggacagattgtgcagacgggatgtagggatgagtga caacgcagtgtcctgtttccttgggtcttgctcagatcttcttcagactctcatggaggctgatatatgctgtgatgaaa tgctacttcctgtgctggacacagaagatgcctgggtgtctgttgaagggcacagctcgttagtggagttagcacttgaa cagaaacacatccactatcctctagttgagcaccagtctgtgctctgcatagtcttgtatggagccatgaagttctcgct gaagaacgtgaagcccctctctctctttgatagcaagggtaaaaatgcttttttcaaagatttgacttcaattcaattgt tgcctagtggagaagtggatcctactctgcttagtttacgccatcaattcttaaccaaactagtgagtgcattggcccag gtccaagctccatctaagacgacagacagaccggaagaagaagttgcagtgttgctgaaggacagggattggcctgcctt ggctttggatctggcacatcatcttcaaatttctgaggatataatcagacggcactatgtgtgtgagctctatagttatg gcctggatcatcttggagaagaggttattcttcaggtagaggacaaagaagtgcttgcatcacaattgttggtgctggct ggacagaggctggcctatgccttactgcacactcaaacaaaagaaggcatggagctgttggccagactacctccaacact ttgcacttggcttaaagctatggatccacaagatcttaaaaatgtagaagtgccaattaccacaactgctaaattagtaa ataaagtgatagaacacctaccagaaaaccatggccagtacagtgttgctttgcatctaattgaagctgtggaaggaatg tcatgacaagaagactaaaactgaagcacggtgactagaaaggtctctaataaaagtgaagattgtatataagaac |
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Protein
| Protein ID | habu1_s304_g01435.t1 |
|---|---|
| Definition | - |
>habu1_s304_g01435.t1 MACTLVPFCSFQDLESARDFLCSHLRQSGSGEPWGAKECGGKSSNWEEENWGSWDEAETQDPEEEEDLTSKTQTNSWLQD CVISLSPTNDLMVIAREQKAVFFVPKWKQNEKGKEEMQFAVGWSGSLGWNGPCGVEEIECVTSALCIPLASQKRSSTGRP DWTCIVVGFTSGYVRFYTESGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPSAIVTIEGFSLFQSLRAC RNQVARATASGNENVQPPPLAYKKWGLQDVDTIVDHISVGIMTLSPFDQMKTASTIGGFNAAIKNNPPAMSQYITVGSNP FTGFFYALEGSSQPLLSHVAFTVASKLTSAFFNAASGWLGWKNKQEEDPVQKQKPKVEPATPLPVRFGIPDSRRHGERIC LSPCNSLAAITDDFGRVLLLDVVRGLSVRMWKGYRDAQVGWIQIAEDLHERESIKIDFSPTSTPQGPSRVAQFLVIYAPR RGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLNSVTSQGWQPQTYQICLVDPVSGTVKTVHIPFHLALSDKKSERA KDMHLLKKLAALLKAKTLNLDTVEVEVKELILDVKYPATKKQALESILANERLPLSFLMNITQTLMETLKNQEMDYIDEG LLQFCTNKLKLLQLHKSVSDLNSQTMQPETEPSDNILAKLLRLDEKEFTRLQMLLERYKQQNTQPSVHFVEDEDGMLPVK TFLDYLDYEKDAINVKKLDDKEYVALGGFFFWKCLHGESSIEEMCQTLESAGFSPQILLSLLLSVWLSKEKTVLQRAQSI CCLQAALSLLSKMTEVSWDSQSVSPWWQQMRTACIQSENNGAALVFAHVGHSVTAQISDSVAEKKFPQITVGADTESWEA LSLDIEYWKLLLKQLEDCLILQTLLNSKVSKKTSPASSLQAEPLGRLSVKKLLEGGKGGIADSVAKWIFKQDLSLSLLRL GRQKNEAESKEEPQQTDSNFVGEDEEDQPSMKPILELLRLAYEQFPCSLEMDVLHAHSCWEYVVQWNKDPEEACFLIRSI EHLGCIDNAHIQHGIALMMWNTFIVKRLSAATYLMDKVGKAPKDRLCRRDVGMSDNAVSCFLGSCSDLLQTLMEADICCD EMLLPVLDTEDAWVSVEGHSSLVELALEQKHIHYPLVEHQSVLCIVLYGAMKFSLKNVKPLSLFDSKGKNAFFKDLTSIQ LLPSGEVDPTLLSLRHQFLTKLVSALAQVQAPSKTTDRPEEEVAVLLKDRDWPALALDLAHHLQISEDIIRRHYVCELYS YGLDHLGEEVILQVEDKEVLASQLLVLAGQRLAYALLHTQTKEGMELLARLPPTLCTWLKAMDPQDLKNVEVPITTTAKL VNKVIEHLPENHGQYSVALHLIEAVEGMS |
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