Gene
| Gene Model ID | habu1_s309_g01454 |
|---|---|
| Locus | habu1_scaffold309 : 202077 ... 223775 : - |
| To GenomeBrowser | habu1_scaffold309:202077..223775 |
| Genes list of scaffold | habu1_scaffold309 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 5 isoform x1 | GO:0002376 GO:0007165 GO:0016020 GO:0048518 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s309_g01454.t1 | 7 | 1 | LRR_8 | 93 | 139 | 0.0 | 173.7 | 2.1e-11 | 3.1e-08 | 33.2 |
| habu1_s309_g01454.t1 | 7 | 2 | LRR_8 | 155 | 200 | 0.0 | 173.7 | 5.0e-09 | 7.4e-06 | 25.6 |
| habu1_s309_g01454.t1 | 6 | 1 | LRR_4 | 155 | 194 | 4.1e-32 | 109.2 | 4.7e-09 | 7.0e-06 | 25.5 |
| habu1_s309_g01454.t1 | 7 | 3 | LRR_8 | 298 | 356 | 0.0 | 173.7 | 4.2e-15 | 6.2e-12 | 45.0 |
| habu1_s309_g01454.t1 | 6 | 2 | LRR_4 | 299 | 336 | 4.1e-32 | 109.2 | 3.9e-06 | 0.0058 | 16.2 |
| habu1_s309_g01454.t1 | 2 | 1 | LRR_5 | 308 | 403 | 2.9e-14 | 52.8 | 1.3e-08 | 1.9e-05 | 24.3 |
| habu1_s309_g01454.t1 | 6 | 3 | LRR_4 | 345 | 381 | 4.1e-32 | 109.2 | 2.0e-07 | 0.00029 | 20.3 |
| habu1_s309_g01454.t1 | 7 | 4 | LRR_8 | 346 | 404 | 0.0 | 173.7 | 2.1e-16 | 3.2e-13 | 49.2 |
| habu1_s309_g01454.t1 | 6 | 4 | LRR_4 | 439 | 473 | 4.1e-32 | 109.2 | 6.2e-06 | 0.0092 | 15.5 |
| habu1_s309_g01454.t1 | 7 | 5 | LRR_8 | 488 | 549 | 0.0 | 173.7 | 2.8e-11 | 4.1e-08 | 32.8 |
| habu1_s309_g01454.t1 | 2 | 2 | LRR_5 | 508 | 569 | 2.9e-14 | 52.8 | 1.4e-06 | 0.002 | 17.8 |
| habu1_s309_g01454.t1 | 7 | 6 | LRR_8 | 513 | 571 | 0.0 | 173.7 | 3.0e-14 | 4.5e-11 | 42.3 |
| habu1_s309_g01454.t1 | 6 | 5 | LRR_4 | 514 | 554 | 4.1e-32 | 109.2 | 5.9e-10 | 8.7e-07 | 28.4 |
| habu1_s309_g01454.t1 | 7 | 7 | LRR_8 | 538 | 590 | 0.0 | 173.7 | 6.4e-09 | 9.4e-06 | 25.2 |
| habu1_s309_g01454.t1 | 6 | 6 | LRR_4 | 538 | 571 | 4.1e-32 | 109.2 | 3.8e-06 | 0.0057 | 16.2 |
| habu1_s309_g01454.t1 | 1 | 1 | TIR | 706 | 843 | 7.0e-28 | 96.8 | 1.3e-30 | 1.9e-27 | 95.4 |
| habu1_s309_g01454.t1 | 1 | 1 | TIR_2 | 707 | 788 | 3.0e-07 | 30.5 | 5.1e-10 | 7.6e-07 | 29.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s309_g01454.t1 | gi|602657507|ref|XP_007434471.1| | PREDICTED: toll-like receptor 5 [Python bivittatus] | 0.0 |
| habu1_s309_g01454.t1 | gi|637257645|ref|XP_008124084.1| | PREDICTED: toll-like receptor 5 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s309_g01454.t1 | gi|327262543|ref|XP_003216083.1| | PREDICTED: toll-like receptor 5 isoform X4 [Anolis carolinensis] | 0.0 |
| habu1_s309_g01454.t1 | gi|637257659|ref|XP_008124088.1| | PREDICTED: toll-like receptor 5 isoform X3 [Anolis carolinensis] | 0.0 |
| habu1_s309_g01454.t1 | gi|637257655|ref|XP_008124087.1| | PREDICTED: toll-like receptor 5 isoform X2 [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.7 |
| Venom grand-1 | 3.0 |
| Pit, infrared sensing | 1.7 |
| Nose | 1.3 |
| Brain-1 | 0.9 |
| Eye | 0.8 |
| fetal fibroblast | 0.8 |
| venom gland-2 | 3.7 |
| Brain-2 | 0.9 |
| Spleen | 1.5 |
| Lung | 4.1 |
| Liver | 26.8 |
| Kidney | 2.9 |
| Pancreas | 1.0 |
| Small intestine | 0.7 |
| Large intestine | 1.0 |
| Stomach | 0.8 |
| heart | 3.3 |
| ovary | 6.2 |
| cheek muscle | 0.9 |
Transcript
| Transcript ID | habu1_s309_g01454.t1 |
|---|---|
| Definition | - |
>habu1_s309_g01454.t1 atggattccagtaaaaatgatttgtatatttgtctactagatgttgaaatactgggcagtagtctacagtggatcatcct ggttgaaaccctgcttgctcggggtgggtaatattaaagcctagaccaaactggcagagatgctacagggaagtcactat gtgatgggtacaaccaggattgtctcttttctgtcctagccgctcagcattcttcctgaaaacatctcattttctgaggt ttggagatttttttcctctctcacaagtggataagaatcaatgaaagctaaaaaaaagaaagaaaaaaggaaactgcttg aaagtccccctaaatcaaaccaggaatttttctgttccattacgtacacctcaatggcacagattgagagcacgatgttt tgtcactgcatgatatttgtgcttggaacagtgcttgtgagcagagaaacatttgcaattcgaagctgttcagtggaaaa cgtgatagccttctataatacatgcaatctcacttgggtgccacctgtgcctgaacatgttgttattctatccctaaact ttaatttcatccaagaagttaatgcaacctcattccctctgagggagaaactaaacattttataccttgtgggccaaaaa tactttcctttaactataggaaaagatgcttttaggaatttgccaaaccttcgacaactggatttgaatggcaacaaaat gatggtgttagaccctgatgcttttgtgggcttgtttagagtacgtaatctttttctatatgaaaatgggcttgatgaat ccattctggaagaggattacctcagagatttgatttcattggaatatctgagcctcagatttaatacaatcactcgtgtt cgccctcacaatatattttataagatgaaatccttggatattctagatttaggattcaaccctattgaatctatctgtga aggggatcttaataattttcgaggagcaaggttcaaattgtttattctttataatactaatttgtatggacattctatga attgggctacttgtgggaatcctttaaaaaatattagcatagaaacaatggatgttgggagtaatggctggggtacaact ctaacgcagcaattctgtgcagctattagaggatccccacttttggctttgaagatttcctctcatactatgggtgcatc atttggatttaataatcttcctgatcctgatattaatacatttgcaagtcttaatgacagtggcctcatcttgcttgata tatcaaaaggctggattttttctcttaaaccacaagtatttcagcatctccatgatttgaagctgctgaatcttaacaat aataaaataaataaaattgagacaggagcatttcttggtcttcagaatctgcaacatctatacctatcaaacaatctgct tggtgagctctttaaggacacttttgaagggcttcctaatgtgattcatatagatctaaaacataatcacattggagtga ttgatagagatccattcagatccttaccacggcttcaacacgtggatctccgggataacgctttaaaagtaatcaattct ctcccaaatctcctcaatgttatgttaggtggcaaccggatagagactacaccatattggaaaatacaatttataaatgc cacactccttaacttagaaggaaacaaattggggaatctgggtgatctctatgaacttctccaatttccagcactgcagt atcttgttttaaaaaacaatcgtttatcctattgcttcaaatacaaagacatagcaaaagacaatcagttgctttacttg gaccttggagacaacatgctaaagcttatatgggagagaggtttatgtttggatgtgttcaaagccctttcccacttgga agttctccatctcaataacaactaccttactttcatcccagagggtatatttagtgagctaatgtcactcaagacactta acttgtctaacaacctattgacttccatttctcaagattcctttcctacaaacttgaaagctcttaatttgtcatcaaat cagctattttaccctgatcctcagatctttgcaacattagaccagctagatatcacccataacacattttactgtaactg cctattaagtgactttattatgtggctaaaccaaaccaatattactttagatggctcacgctatgacatattttgttctg gaccaccagaatttgctaatattcctctccatggcttaaatacagagaattgcaatgaagacaagctcatggagcctcta cagctatcgctcttcatttttacttgtgttagtataattgtgtttctagtagcagtagttgttttttctcgttttagggg cgtttgtttcctctcgtataaaacactcatacaattcctcatgaaggagcttccaccagatctggatcaacaaggataca aatatgatgcttatctttgctatagcagcaaagactttgagtgggtccaaaattccttgataaagcatctagatactcaa tattctaagaagaacagatttgctctctgctttgaagacagagacttcctgcctggggaggatcatatcagtaatattca tgatgctgtctggaactgcaagaagacaatttgtgtggtcacaagacagtttctcaaggatggctggtgtgtggaagcct ttaattttgcccagagcaggtatctctctgatctggaggatatacttataatggtggtagctggatctctttctcaatat cagcttatgaaatatcaaccaatcaggatcttcttgcaaagagggcagtacctgagatggccagaagaccatcaagattt ggagtggtttttaaacacactgtctcaccaaataatgaaggaaaagaaaattaagaagcccccagcgctagaattgaagg ttatgaccgtttcctaacaggtgtggttcctggccattatgcaagtctgactttccagagaatttgtcagttcattctga tatcatagggcgccattctctctgtccaatgagctaagtgaacatgatgttgatacttctctgttatatctctggtgaac ttgacttcatttttttcagtgtaaaatgtctgattacttatagtgttaagttgtggaagcacagttatggatgattggta tactattttggaaggctcttgcacatgcatatctgctgaaataaaggaatggtgcagtttaatgcaactataaatgttgc tgatgttgctcagcccaaaaggtgggtcggtgggggacattacagtctctgctttggtgggttcagataatagatctgtg caaacattcagaagagcagtgttttccaaccttgacaactttaagaagtgtggaagtccaactcccagaattctgggaac cccacacatcttaaagttgctaaagttgagaaacactctaatggagacttagttttattaggagctaggattcagacatg cccccccccactccagtgttttgtaaagtatctgtgtatttctttgtgcattgagcaatcagcctctgcagatctgtgcc aaatttggttcaagatattaacatgccttcctgttttgaggggccatcctttttagatttcctgttcatggagtagtttg tttatattcaactcaaaaaaaagtaaaacaacagggttgcaggagtgcttggtatacaaggtgaggtgcagtttaacttg cattcttatcctgaaagattgcagagagtgataactgaaatatggaatggctaaactttttcaatgtacattttttcaga taaatctgtgttttgtttttgcatatttcttctcaagagcaatgttttaaaatctgactgagcaggtcactttccatcaa aatgtgtgttttttttggctcagttattcattccctgtaaattaagcacctaccagggagggttgcatcattgcaagttc ttcccttgtcttctgtgtgtttttgtcacgtgcccaagatatcccaatatgacgatctacagatgttctgatgcagactt cctttagctgtccagatttgttggattgcaactgccataattccatgcaaatttgagaaatgttgttcaaagaatttcac tactatgaggcaaggccttccaacagtatttattttgcatggaatagaaagaatatatataatacaagtttaagaacaac tatctcagtggctaagcaatttagtccttagagtgaaacccagtacttcaccttttacatattattcttattcctatttt cattttatacataatattaaagtgttaataaatattttaaacataatattttaaaaaaaactatttttgagcctcttgaa tttgtttcatagtatctacctcagaacaggtgtgcatgagaattccattcagtttgttttttataaaaacttacccaaac tttttttccaaaattgagaaggaaaatattaaagaggttaaatttaaaaccttaa |
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Protein
| Protein ID | habu1_s309_g01454.t1 |
|---|---|
| Definition | - |
>habu1_s309_g01454.t1 MAQIESTMFCHCMIFVLGTVLVSRETFAIRSCSVENVIAFYNTCNLTWVPPVPEHVVILSLNFNFIQEVNATSFPLREKL NILYLVGQKYFPLTIGKDAFRNLPNLRQLDLNGNKMMVLDPDAFVGLFRVRNLFLYENGLDESILEEDYLRDLISLEYLS LRFNTITRVRPHNIFYKMKSLDILDLGFNPIESICEGDLNNFRGARFKLFILYNTNLYGHSMNWATCGNPLKNISIETMD VGSNGWGTTLTQQFCAAIRGSPLLALKISSHTMGASFGFNNLPDPDINTFASLNDSGLILLDISKGWIFSLKPQVFQHLH DLKLLNLNNNKINKIETGAFLGLQNLQHLYLSNNLLGELFKDTFEGLPNVIHIDLKHNHIGVIDRDPFRSLPRLQHVDLR DNALKVINSLPNLLNVMLGGNRIETTPYWKIQFINATLLNLEGNKLGNLGDLYELLQFPALQYLVLKNNRLSYCFKYKDI AKDNQLLYLDLGDNMLKLIWERGLCLDVFKALSHLEVLHLNNNYLTFIPEGIFSELMSLKTLNLSNNLLTSISQDSFPTN LKALNLSSNQLFYPDPQIFATLDQLDITHNTFYCNCLLSDFIMWLNQTNITLDGSRYDIFCSGPPEFANIPLHGLNTENC NEDKLMEPLQLSLFIFTCVSIIVFLVAVVVFSRFRGVCFLSYKTLIQFLMKELPPDLDQQGYKYDAYLCYSSKDFEWVQN SLIKHLDTQYSKKNRFALCFEDRDFLPGEDHISNIHDAVWNCKKTICVVTRQFLKDGWCVEAFNFAQSRYLSDLEDILIM VVAGSLSQYQLMKYQPIRIFLQRGQYLRWPEDHQDLEWFLNTLSHQIMKEKKIKKPPALELKVMTVS |
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