Gene
| Gene Model ID | habu1_s309_g01463 |
|---|---|
| Locus | habu1_scaffold309 : 632510 ... 642015 : + |
| To GenomeBrowser | habu1_scaffold309:632510..642015 |
| Genes list of scaffold | habu1_scaffold309 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein cornichon homolog 4 isoform x1 | GO:0005783 GO:0016020 GO:0035556 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s309_g01463.t2 | 1 | 1 | Cornichon | 29 | 137 | 5.5e-40 | 136.4 | 1.30321e-43 | 6.6e-40 | 136.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s309_g01463.t2 | gi|471370889|ref|XP_004375955.1| | PREDICTED: protein cornichon homolog 4 isoform X1 [Trichechus manatus latirostris] | 0.0 |
| habu1_s309_g01463.t2 | gi|386781245|ref|NP_001247595.1| | protein cornichon homolog 4 [Macaca mulatta] | 0.0 |
| habu1_s309_g01463.t2 | gi|507978376|ref|XP_004693090.1| | PREDICTED: protein cornichon homolog 4 isoform X1 [Condylura cristata] | 0.0 |
| habu1_s309_g01463.t2 | gi|466015029|ref|XP_004271044.1| | PREDICTED: protein cornichon homolog 4 isoform X1 [Orcinus orca] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.0 |
| Venom grand-1 | 7.1 |
| Pit, infrared sensing | 4.9 |
| Nose | 4.0 |
| Brain-1 | 6.0 |
| Eye | 6.2 |
| fetal fibroblast | 13.8 |
| venom gland-2 | 5.9 |
| Brain-2 | 7.6 |
| Spleen | 3.6 |
| Lung | 3.1 |
| Liver | 3.9 |
| Kidney | 4.6 |
| Pancreas | 3.4 |
| Small intestine | 3.3 |
| Large intestine | 3.6 |
| Stomach | 3.8 |
| heart | 7.2 |
| ovary | 15.1 |
| cheek muscle | 12.4 |
Transcript
| Transcript ID | habu1_s309_g01463.t1 |
|---|---|
| Definition | - |
>habu1_s309_g01463.t1 ggccgagaggacgggcagggcggcaatttccgcagcacgatggagtcgatggtgttcattttttcgctcattgattgctg cgccctgattttcctttctgtttactttataattacactatcagatttggaatgtgattacattaatgccagatcttgct gctcaaaactaaataaatgggtgatccctgaattgatcggccataccattgtcactgtattaatgcttatttcactgcac tggttcatcttccttctcaattttcccgtggcaacgtggaacatatacaggtgtattatggttcccagtggaaacatggg agtatttgaccctacagaaatccataacagagggcagctaaaatcacacatgaaggaggccatgataaagcttggttttc atctcctttgtttcttcatgtatctttacagtatgatcctggctttaataaatgactgaaactgaagtggcagtattatg gttgccaaattgatgttactccattgaaatactatgaagccatgagcaactctcaagaaaatcaagaccagtgatgtcat gcagtatattttttcctctttgaacaaaacatatttttgctgtatttttaacatataaaatattttagaaactacaatac tatgtttttgcaactattgttttgttcttactcaaatccattttcttactgtatttaattcttatgtaatgtaaagattt tgcaagaatactggttacccaatgcagcagattcacatattaaagtgaagcaacaggtataacagtttcattgaagaagg ttttatcatacaaaaggaagcttaccagagacgaatgaccagtgttttctttcctataggcaacattttaaagatagttc atttatgtgtttaaactgaaggctgaagtatgttcaatggccaaacatttgtcagttcagtgttaccctccacgtgcaca accagtgtgcttctatttagactgttgaagttcacttctaacattcaggtcacacatagctgctataatactttgtgaaa tgatttttcaaacacccttttttaatatatgaatatattttgcggacagtatatatattcatagtttgcatgtattataa tggtagtagcccacatccaaattgaagctgtgcgttatatctgcaatcccatttgctgttgggacagttggtactaatca attcaatagagtttgcaactcaaactacagcctatagccactggttcaataaacagcctgattttgcttgcctgttaaga ctacaaaagatagatagcagctgtctttaagatttatggggatggctttgtgctccaagtgagtaactcatgttcagtct gagcagtatgggatccgttctcacaagacttcttgctggatattcaagggttgagcagttgtatgatcatatgtgtatgt atacatcttagaaaagaaaggaacttttgttcctttctagtatgaaatagaagtcaaagcttatgaagctaagaactact aatcaaatccagtcatttattttgtttattgaactggaaagagggaatacaaatatttgttaagtgctgtgcaccaacat ggaaaagtttaattaaaaaaaactccaatagataatcaggaattaacgtagcttgaattgaacgatttaagatatgttta atatactacatatttataaaataaaaaattaatgtgccccataaataattagtaaaactagtgaaaataaatacggagcc ccaaaattcatgttttaatgtcagaaaagaaatttaaactacttaatataattcaagaggaaagtaacaaaatccagaaa atttaataacgcaatcctttgaaacatttaatatcagtccatagcaaatagtcattacataccaaaagctctaagtgtta actagttccaccacaactccatataaatcttgacaatttagaaatttgagaacagtaaaagttcttttcttgatctctac agcttggtttgtaaatacacacatacgtttgagaatgtttcttcctcttacatttttggagccaatagctttttccatct gtgccagtaagtgttaagaatcaaatctagtacacttatttttaacaatgaaacacttaaaaaatggggcacactgtact tcaaatttataaaaatatatttgtattaaccaaat |
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| Transcript ID | habu1_s309_g01463.t2 |
| Definition | - |
>habu1_s309_g01463.t2 cgttggttggggaaagcgagagagaagcggcttttcgagtaagggggttgattgcatgttgtcgagattgtttgatctat cattcaacttttctggttacattctgtttggatatggcaaaaagcctggttcctgcttaaatataattacactatcagat ttggaatgtgattacattaatgccagatcttgctgctcaaaactaaataaatgggtgatccctgaattgatcggccatac cattgtcactgtattaatgcttatttcactgcactggttcatcttccttctcaattttcccgtggcaacgtggaacatat acaggtgtattatggttcccagtggaaacatgggagtatttgaccctacagaaatccataacagagggcagctaaaatca cacatgaaggaggccatgataaagcttggttttcatctcctttgtttcttcatgtatctttacagtatgatcctggcttt aataaatgactgaaactgaagtggcagtattatggttgccaaattgatgttactccattgaaatactatgaagccatgag caactctcaagaaaatcaagaccagtgatgtcatgcagtatattttttcctctttgaacaaaacatatttttgctgtatt tttaacatataaaatattttagaaactacaatactatgtttttgcaactattgttttgttcttactcaaatccattttct tactgtatttaattcttatgtaatgtaaagattttgcaagaatactggttacccaatgcagcagattcacatattaaagt gaagcaacaggtataacagtttcattgaagaaggttttatcatacaaaaggaagcttaccagagacgaatgaccagtgtt ttctttcctataggcaacattttaaagatagttcatttatgtgtttaaactgaaggctgaagtatgttcaatggccaaac atttgtcagttcagtgttaccctccacgtgcacaaccagtgtgcttctatttagactgttgaagttcacttctaacattc aggtcacacatagctgctataatactttgtgaaatgatttttcaaacacccttttttaatatatgaatatattttgcgga cagtatatatattcatagtttgcatgtattataatggtagtagcccacatccaaattgaagctgtgcgttatatctgcaa tcccatttgctgttgggacagttggtactaatcaattcaatagagtttgcaactcaaactacagcctatagccactggtt caataaacagcctgattttgcttgcctgttaagactacaaaagatagatagcagctgtctttaagatttatggggatggc tttgtgctccaagtgagtaactcatgttcagtctgagcagtatgggatccgttctcacaagacttcttgctggatattca agggttgagcagttgtatgatcatatgtgtatgtatacatcttagaaaagaaaggaacttttgttcctttctagtatgaa atagaagtcaaagcttatgaagctaagaactactaatcaaatccagtcatttattttgtttattgaactggaaagaggga atacaaatatttgttaagtgctgtgcaccaacatggaaaagtttaattaaaaaaaactccaatagataatcaggaattaa cgtagcttgaattgaacgatttaagatatgtttaatatactacatatttataaaataaaaaattaatgtgccccataaat aattagtaaaactagtgaaaataaatacggagccccaaaattcatgttttaatgtcagaaaagaaatttaaactacttaa tataattcaagaggaaagtaacaaaatccagaaaatttaataacgcaatcctttgaaacatttaatatcagtccatagca aatagtcattacataccaaaagctctaagtgttaactagttccaccacaactccatataaatcttgacaatttagaaatt tgagaacagtaaaagttcttttcttgatctctacagcttggtttgtaaatacacacatacgtttgagaatgtttcttcct cttacatttttggagccaatagctttttccatctgtgccagtaagtgttaagaatcaaatctagtacacttatttttaac aatgaaacacttaaaaaatggggcacactgtacttcaaatttataaaaatatatttgtattaaccaaat |
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Protein
| Protein ID | habu1_s309_g01463.t1 |
|---|---|
| Definition | - |
>habu1_s309_g01463.t1 MESMVFIFSLIDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLMLISLHWFIFLLNFPVATW NIYRCIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND |
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| Protein ID | habu1_s309_g01463.t2 |
| Definition | - |
>habu1_s309_g01463.t2 MLSRLFDLSFNFSGYILFGYGKKPGSCLNIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLMLISLHWFIFLLN FPVATWNIYRCIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND |
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