Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s313_g01526
Locus habu1_scaffold313 : 2307176 ... 2312291 : -
To GenomeBrowser habu1_scaffold313:2307176..2312291
Genes list of scaffold habu1_scaffold313

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s313_g01526.t1 gi|602661500|ref|XP_007436402.1| PREDICTED: 39S ribosomal protein L33, mitochondrial isoform X1 [Python bivittatus] 3.0e-31
habu1_s313_g01526.t1 gi|637268908|ref|XP_008102902.1| PREDICTED: 39S ribosomal protein L33, mitochondrial [Anolis carolinensis] 7.0e-26
habu1_s313_g01526.t1 gi|602661502|ref|XP_007436403.1| PREDICTED: 39S ribosomal protein L33, mitochondrial isoform X2 [Python bivittatus] 1.0e-25
habu1_s313_g01526.t1 gi|557296782|ref|XP_006030737.1| PREDICTED: 39S ribosomal protein L33, mitochondrial [Alligator sinensis] 2.0e-23
habu1_s313_g01526.t1 gi|530591852|ref|XP_005289570.1| PREDICTED: 39S ribosomal protein L33, mitochondrial [Chrysemys picta bellii] 3.0e-21

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 59.8
Venom grand-1 89.1
Pit, infrared sensing 60.5
Nose 65.2
Brain-1 43.4
Eye 64.2
fetal fibroblast 39.9
venom gland-2 148.5
Brain-2 43.3
Spleen 44.5
Lung 32.1
Liver 15.9
Kidney 49.3
Pancreas 50.5
Small intestine 26.5
Large intestine 46.6
Stomach 56.4
heart 213.3
ovary 309.2
cheek muscle 266.5

Transcript
Transcript IDhabu1_s313_g01526.t1
Definition-
>habu1_s313_g01526.t1
ggggttatttgaagtattttagacggttaccgtttagttgccgttttcgtcattgcaatgtttctgacggtggtcaattt
ggccaagaaaaccaaatcaaagtatatacttgtgagaatggtcagtgaagcaggaacaggttattcttttaatgtaaaaa
gactccgacttgaagacaagctggtaatgctaagatatgatcgcattgtcaaacagaaagtcctcttcaaagagcataaa
aagatctgttctgtgaactgatgcttggcaaagaagatttgtgaagatgtatacaaggaaatacgaagttggcaatgctg
aaaagagaaaatgaactgagatggtcaaagccaattgtaaataaaaacatcatggaaaatcactgat

Protein
Protein IDhabu1_s313_g01526.t1
Definition-
>habu1_s313_g01526.t1
MFLTVVNLAKKTKSKYILVRMVSEAGTGYSFNVKRLRLEDKLVMLRYDRIVKQKVLFKEHKKICSVN

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