Gene
| Gene Model ID | habu1_s3258_g11212 |
|---|---|
| Locus | habu1_scaffold3258 : 168636 ... 177555 : + |
| To GenomeBrowser | habu1_scaffold3258:168636..177555 |
| Genes list of scaffold | habu1_scaffold3258 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neurofilament medium polypeptide isoform x2 | GO:0005198 GO:0005883 GO:0007017 GO:0043005 GO:0045104 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3258_g11212.t1 | 1 | 1 | Filament_head | 12 | 83 | 5.4e-10 | 39.8 | 1.5e-13 | 5.4e-10 | 39.8 |
| habu1_s3258_g11212.t1 | 1 | 1 | Filament | 105 | 416 | 0.0 | 344.2 | 0.0 | 0.0 | 344.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3258_g11212.t1 | gi|602642845|ref|XP_007428207.1| | PREDICTED: neurofilament medium polypeptide isoform X1 [Python bivittatus] | 0.0 |
| habu1_s3258_g11212.t1 | gi|602642847|ref|XP_007428208.1| | PREDICTED: neurofilament medium polypeptide isoform X2 [Python bivittatus] | 0.0 |
| habu1_s3258_g11212.t1 | gi|543381859|ref|XP_005534120.1| | PREDICTED: neurofilament medium polypeptide-like [Pseudopodoces humilis] | 0.0 |
| habu1_s3258_g11212.t1 | gi|530582750|ref|XP_005285217.1| | PREDICTED: neurofilament medium polypeptide [Chrysemys picta bellii] | 0.0 |
| habu1_s3258_g11212.t1 | gi|729730575|ref|XP_010561121.1| | PREDICTED: neurofilament medium polypeptide [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.2 |
| Nose | 1.9 |
| Brain-1 | 37.2 |
| Eye | 6.8 |
| fetal fibroblast | 0.6 |
| venom gland-2 | 0.3 |
| Brain-2 | 262.6 |
| Spleen | 4.6 |
| Lung | 4.8 |
| Liver | 0.1 |
| Kidney | 1.7 |
| Pancreas | 0.8 |
| Small intestine | 0.3 |
| Large intestine | 0.9 |
| Stomach | 0.6 |
| heart | 0.1 |
| ovary | 46.2 |
| cheek muscle | 0.4 |
Transcript
| Transcript ID | habu1_s3258_g11212.t1 |
|---|---|
| Definition | - |
>habu1_s3258_g11212.t1 gctgccgggaaaagccgcccaaggcgcctctctcaagtcttccaagatgagctactcgctggagccgctaagcaacccct cttaccggcgggtggccgagagccggaccaccttcagccgggccagcgggtcgccgtccagcggcttccgctctcagtct tggtctcggagctcgcccagcccggcctcgtcgacttacaagcgcaatgtgggccccgggcggacttcttacggctcgac ggtcctgagctccaccgacagccttgagctgagccagtcgtcgctcttcaacggcggcggccttggcgctggcggcggcg gcggcggggggacggtggagctgaagctgagccgctccaacgagaaggagcagctgcaggggctgaacgaccgcttcgcc ggctacatcgagaaggtgcactcgctggagcagcagaacaaggagctggaggtcgagctggccgccctgcggcagaagca ggtgggccgctcgcagctgggcgtggccctggagcaggagctgcgcgagctccgcgtggccctggagcaggtcaaccacg agaaggcggcgctgcagctcgactcggagcacctggaggaggacatccaccgcctcaaggagcgcttcgaggacgaggcg cgcctccgcgacgacgccgacgccatcacccgcgccctgcggaaggacatggaggaggcgtccatggtgaaggtcgagct ggacaagaaggtgcagtctctgctggacgaggtggccttcctgcgcggcaaccacgatgaagatgtggccgatctgctgg cccagatccaggcctcgcacgtctccgtcgagcgcaaggactacctgaagaccgacctctcgtccgccctcaaggagatc cgctcccagctcgagtgccactccgaccagaacatgctccaggccgaggagtggttcaagtgccgctactccaagctcac cgaggccgccgagcagaacaaggaagccatccgctcggccaaggaagagatctccgagtaccggcggcagctccaggcca agagcatcgagctggagtccgtccgcggcacgaaggagtccttggagcgccagctgaacgacattgaggaacgccacaac caggatctctccagttaccaagacacgatccaacagcttgaaaatgagctgagaggtacgaagtgggagatggcacgtca tttgagggaataccaagatctcctcaacgtcaagatggctctcgacattgaaattgctgcctacaggaaacttcttgagg gtgaagaaacaagattcagtgccttttctggaagcatcgttgggccaacatttacacataggcaaccttccatcacaata tcaactaccaaaatacagaaatcaaaagctgaaccaccaaaactaaaggtccaacacaagtttgtagaagaaatcattga agagaccaaagtagaaaatgagaaaactgaactggatgaagctcttgaagccatggctgaagaactggctgctgaaactc gagcaggtgaagaaaaggaggaggaagttctagaagaggaaattgtagcagtggaaaaggctgaagtcacagctgccatc ccagaagaagaagaagaagaaggggaagaagaagaggaaggtgcaaaatctgacgaggcagaagaaggatcagaaaaaga agaagaaaaaagcgaaaaggacgaaggtgaggaagaagcagaagaagaggccggagaaggagaagctgaggaagctgaag ctgaagtagcagaagagcctgaaggagatgtagaagaagtcattgcaccagagaaggtagaaaagatgaaaacgtctcct cccaaatcaccccccaaatcacctgtgactgaagaaaagaaagaagatggagttggtgatcaagagggggaggtagcaga agaggaagaaggaacagagaaagtagaatccccatcaaaaatagcatctcctgaaaaaccaagcactccagacaaaggat ctccagaaaaagcagtcagtccagaaaaggctgggactccagagaaggctgggacaccacaaaaagaaagtccagagaag gctgcctctccagagaaggctgggactccagaaaaagctggaactccagaaaaagctgggactccagaaaaaactgggac tccagaaaaagcagggactccagaaaaagcagcctctccagagaaggcaggaactccagagaaggctgcatcaccagaaa aagcagggactccagagaaggctggaattccagagaaagcagggactccagagaaggcagcctctccagaaaaagcaagg actccagagaaggcagcttctccagagaaggcagggactccagagaaagctgcatctccagagaaagcagggactccaga gaaggcagcctctccagagaaggcagggactccagataaagctgcttctcctgaaaagccaagctccccagtgaaagatg tggaagaggttatctccaccacaaaggcttccaccgttggtgcagaaaaagaatcaaaagagaaaagtgagaaaacctcc aaggaatcgactaaagaagacatagccatcaatggggaggttgacgataagggggaggaagaagatgactccaaacaaga agaagacaaaggtatcatcaccaatggtctggatgtgagcccttccgaggaggaggagaagaaggggaagagtgaggaga aagtcgtggtgacgaaaaaagtggagaaggtcaccagtgaaggtgacgggaccaccacctacatcaccaagtccgtaacc gtcacccagaagatggaagaccatgacgatgccgtggcagagaaagtggtgtccaccaagacggtggagaaggtgacttc ttcccatgccatagtcaaagaaatcaaggaaaacggtgactaaaaataatcatttccccttctctaaagagcttggattg gtgcaaaaggttaagccatacgacagctgcaaaaatgcatgaaagtggcggcttctcagcagaacgggttctctcatggc gtctccaaaaggaccgttggttttctttctgatctatttatgatttctgtgccataccatacccagggggttggggaggg gatgcatgcaagcccggtgcactccctctgcagaactttgggattatttctttaaaaaaaaacaaaaacaaaatatcatg catgagctgttactcttccaggggatgttgctaaattttcctaagctgctgtttggacgcttctgaggaatgtcttcaga tgtattatgcaaagaataaactgagccaaataaataataacaaaagaatgaattta |
|
Protein
| Protein ID | habu1_s3258_g11212.t1 |
|---|---|
| Definition | - |
>habu1_s3258_g11212.t1 MSYSLEPLSNPSYRRVAESRTTFSRASGSPSSGFRSQSWSRSSPSPASSTYKRNVGPGRTSYGSTVLSSTDSLELSQSSL FNGGGLGAGGGGGGGTVELKLSRSNEKEQLQGLNDRFAGYIEKVHSLEQQNKELEVELAALRQKQVGRSQLGVALEQELR ELRVALEQVNHEKAALQLDSEHLEEDIHRLKERFEDEARLRDDADAITRALRKDMEEASMVKVELDKKVQSLLDEVAFLR GNHDEDVADLLAQIQASHVSVERKDYLKTDLSSALKEIRSQLECHSDQNMLQAEEWFKCRYSKLTEAAEQNKEAIRSAKE EISEYRRQLQAKSIELESVRGTKESLERQLNDIEERHNQDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALD IEIAAYRKLLEGEETRFSAFSGSIVGPTFTHRQPSITISTTKIQKSKAEPPKLKVQHKFVEEIIEETKVENEKTELDEAL EAMAEELAAETRAGEEKEEEVLEEEIVAVEKAEVTAAIPEEEEEEGEEEEEGAKSDEAEEGSEKEEEKSEKDEGEEEAEE EAGEGEAEEAEAEVAEEPEGDVEEVIAPEKVEKMKTSPPKSPPKSPVTEEKKEDGVGDQEGEVAEEEEGTEKVESPSKIA SPEKPSTPDKGSPEKAVSPEKAGTPEKAGTPQKESPEKAASPEKAGTPEKAGTPEKAGTPEKTGTPEKAGTPEKAASPEK AGTPEKAASPEKAGTPEKAGIPEKAGTPEKAASPEKARTPEKAASPEKAGTPEKAASPEKAGTPEKAASPEKAGTPDKAA SPEKPSSPVKDVEEVISTTKASTVGAEKESKEKSEKTSKESTKEDIAINGEVDDKGEEEDDSKQEEDKGIITNGLDVSPS EEEEKKGKSEEKVVVTKKVEKVTSEGDGTTTYITKSVTVTQKMEDHDDAVAEKVVSTKTVEKVTSSHAIVKEIKENGD |
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