Gene
| Gene Model ID | habu1_s3258_g11213 |
|---|---|
| Locus | habu1_scaffold3258 : 184021 ... 190945 : - |
| To GenomeBrowser | habu1_scaffold3258:184021..190945 |
| Genes list of scaffold | habu1_scaffold3258 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neurofilament light partial | GO:0005198 GO:0005515 GO:0005883 GO:0008088 GO:0043005 GO:0045110 GO:0050770 GO:0060052 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3258_g11213.t1 | 1 | 1 | Filament_head | 12 | 98 | 4.2e-12 | 46.5 | 2.3e-13 | 3.7e-10 | 40.3 |
| habu1_s3258_g11213.t1 | 1 | 1 | Filament | 99 | 410 | 0.0 | 334.9 | 0.0 | 0.0 | 334.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3258_g11213.t1 | gi|543381857|ref|XP_005534119.1| | PREDICTED: neurofilament light polypeptide [Pseudopodoces humilis] | 0.0 |
| habu1_s3258_g11213.t1 | gi|602642849|ref|XP_007428209.1| | PREDICTED: neurofilament light polypeptide, partial [Python bivittatus] | 0.0 |
| habu1_s3258_g11213.t1 | gi|527248688|ref|XP_005142661.1| | PREDICTED: neurofilament light polypeptide [Melopsittacus undulatus] | 0.0 |
| habu1_s3258_g11213.t1 | gi|530582752|ref|XP_005285218.1| | PREDICTED: neurofilament light polypeptide [Chrysemys picta bellii] | 0.0 |
| habu1_s3258_g11213.t1 | gi|525021144|ref|XP_005058076.1| | PREDICTED: neurofilament light polypeptide [Ficedula albicollis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.8 |
| Pit, infrared sensing | 0.8 |
| Nose | 0.5 |
| Brain-1 | 51.3 |
| Eye | 24.2 |
| fetal fibroblast | 0.2 |
| venom gland-2 | 1.3 |
| Brain-2 | 487.5 |
| Spleen | 13.2 |
| Lung | 0.5 |
| Liver | 0.2 |
| Kidney | 11.0 |
| Pancreas | 0.4 |
| Small intestine | 1.5 |
| Large intestine | 3.9 |
| Stomach | 1.1 |
| heart | 0.1 |
| ovary | 4.2 |
| cheek muscle | 0.2 |
Transcript
| Transcript ID | habu1_s3258_g11213.t1 |
|---|---|
| Definition | - |
>habu1_s3258_g11213.t1 ccggctcaagaagggcgaggctggccgaggaacgggtggagctgcttgtctagtggaggctgnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtcagaggct ccccggcggtataaataggggcgggcggcagtgcccagccgcagagcggtctccctcggccaggtggcagcttcgcgtcc tccctcctcctccccttccccgcccatcaggcacagccgagccgccgccatgagtaccttcggctacgagacgtacttcc cctcctacaagcggcgcttcgtggagagcgcgccccgggtgcatcacctctccagcgtccggagcaccggcggcggcggt ggcggcggcggctatggagctgcacgctcgacctactccagcctctcggcgcccgtctcctccgtctcggtccgtcgcag ctacacctcctcttcttcctccttgctcctgcctccctcggtggaaagcctggacctgactcaagtggcggccatcagca acgacctgaaggccatccgcagccaggagaaagcccagctgcaggacctcaacgaccgcttcgcctgcttcatcgagcgc gtgcacgagctggagcagcagaacaaggtgctggaggccgagctgatggtgctgcggcagaagcacagcgagccctcccg cttccgcgccctctacgagcaggagatccgcgagctgcgcctggccaccgaggaggccaaccacgagaagcaggcgctgc agggcgagcgcgagagcctggaggacacgctgcgggctctgcaggcccgctacgaggaggaggtgctgagccgcgaggac gccgagggccgcctgctggaggtgcgcaagggcgccgacgaggcggccctggcccgggccgagctggagaagcgcatcga cagcctgctggacgagctggctttcctgaagaaagtgcacgaagaggagctggccgagctgcaggcccagatccagtacg ctcacctctccgtcgagatggacgtctcggccaagcccgacctctcctccgccctgcgcgacatccgctcccagtacgag aagctggccgcgcgcaacatgcagaacgccgaggagtggttccgcagccgcttcaccgtcctcaccgagagcgccgccaa gaacaccgacgccgtccgcgccgccaaggacgaggtctccgagagccggcgcctcctcaaggccaagacgctggagatcg aggccacccgcggcatgaacgaagccctggagaagcagctgcaggagctggaggagaagcagaacgccgacctcgccgcc ctgcaggatacagttaacaaattagaaaatgaactgagaaccacaaaaagtgaaatggcacggtacctgaaagaatacca ggatctcctgaatgtgaaaatggctctggacatcgagattgcagcatatagaaaactgctggaaggtgaagagactcggc tcagtttcacaagtgtgggaaacataagcagcggctacacacagacagctggaacctttggaagatcggcctacgggggt ttacagagtagttcctacttaatgtcagctcgttccttccctgcctattattcaagccatgtgcaagaagaacagataga tgtcgaggagacgattgaggcaactaagatggaggaagccaaagaaactcccccttcagaaggagaggaagaaggcgaag gagaggaagaagaagaagctaaggaagaaactgaagagggtgaggaggaaggtggagaaggtgaaggagaggaaggggaa ggagaagaagaggctgaggaagcagacgagggagataaaaaggaagagggagatgaacaagaaaaatctagcggagaagt aactccaaagcagcagaagaaggattgatctgaatcaacttgtgtgctggtttcccagatagcgggctagaattgctaca ccgtatatttaaattacaaatatgttcttgcgttttaaataatttaattaccggtatttatctatcctttttctttttct tttttgatgcaaagtaacccgaatgcttgcagagtgtcaggatggcttaccgccaaaccatgcatggtattattcttacg agccccacatcaatgtgcaatttggctgatttcaaaccttaatgtctgaggggaaaataaattaagagatgtggaatgta ttg |
|
Protein
| Protein ID | habu1_s3258_g11213.t1 |
|---|---|
| Definition | - |
>habu1_s3258_g11213.t1 MSTFGYETYFPSYKRRFVESAPRVHHLSSVRSTGGGGGGGGYGAARSTYSSLSAPVSSVSVRRSYTSSSSSLLLPPSVES LDLTQVAAISNDLKAIRSQEKAQLQDLNDRFACFIERVHELEQQNKVLEAELMVLRQKHSEPSRFRALYEQEIRELRLAT EEANHEKQALQGERESLEDTLRALQARYEEEVLSREDAEGRLLEVRKGADEAALARAELEKRIDSLLDELAFLKKVHEEE LAELQAQIQYAHLSVEMDVSAKPDLSSALRDIRSQYEKLAARNMQNAEEWFRSRFTVLTESAAKNTDAVRAAKDEVSESR RLLKAKTLEIEATRGMNEALEKQLQELEEKQNADLAALQDTVNKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAY RKLLEGEETRLSFTSVGNISSGYTQTAGTFGRSAYGGLQSSSYLMSARSFPAYYSSHVQEEQIDVEETIEATKMEEAKET PPSEGEEEGEGEEEEEAKEETEEGEEEGGEGEGEEGEGEEEAEEADEGDKKEEGDEQEKSSGEVTPKQQKKD |
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