Gene
| Gene Model ID | habu1_s3273_g11224 |
|---|---|
| Locus | habu1_scaffold3273 : 1 ... 19545 : - |
| To GenomeBrowser | habu1_scaffold3273:1..19545 |
| Genes list of scaffold | habu1_scaffold3273 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 12 isoform x3 | GO:0000166 GO:0001786 GO:0005634 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3273_g11224.t3 | 2 | 1 | C2 | 12 | 96 | 2.1e-25 | 88.3 | 1.1e-11 | 8.4e-08 | 31.9 |
| habu1_s3273_g11224.t3 | 2 | 2 | C2 | 144 | 228 | 2.1e-25 | 88.3 | 8.6e-16 | 6.4e-12 | 45.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3273_g11224.t3 | gi|602645305|ref|XP_007429092.1| | PREDICTED: RNA-binding protein 12 isoform X5 [Python bivittatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 18.4 |
| Venom grand-1 | 6.4 |
| Pit, infrared sensing | 11.4 |
| Nose | 11.4 |
| Brain-1 | 6.5 |
| Eye | 16.6 |
| fetal fibroblast | 20.1 |
| venom gland-2 | 14.6 |
| Brain-2 | 7.4 |
| Spleen | 8.6 |
| Lung | 10.2 |
| Liver | 8.0 |
| Kidney | 10.5 |
| Pancreas | 5.0 |
| Small intestine | 8.4 |
| Large intestine | 10.0 |
| Stomach | 9.5 |
| heart | 21.1 |
| ovary | 5.4 |
| cheek muscle | 11.5 |
Transcript
| Transcript ID | habu1_s3273_g11224.t1 |
|---|---|
| Definition | - |
>habu1_s3273_g11224.t1 accgttcatactgctttgggaactacataaagcagttgaatgttcatatctaccactgtgtgcatatggctcactgcgtg accaaggtggaactgtccatttcctgtgacaacctgattgataaagatgttggctcaaaatctgatcctctgggtgtctt gcttcaaaatgttggtggtgatcagtggactgaattggatcgaactgaaaaaataaagaattgccagaatcctcaatttt caaaaaagctgctaattgattattattttgagaaagttcaaaagctgaaatttggtatatatgatattgataataagtca tatgacttaagtgatgatgattatcttggaggtgctgaatgtaccttgggtcagattgtatcaagtaaaatacttgttca gcctttaatgttgaagaaaggaaagcctgcaggaaaaggcactattacgatttgtgcagaagagattaaagataccagag ttgtttctattgatgttgaagctcggaatttagacaaaaaggacttcttaggcaaatcagacccatttttggaattctat aaacagagtgatagtggaaaatggcaacttgtataccgatcagaggtaattaagaacaatttaaatccttcctggaaaaa attcagcgtacctttgcaaacattttgtagcggtgacttcaacaggcaaatcaaggtgcactgttatgattatgatagtg atgggtcacatgatttaataggcagttttgaaagtaccctgtcccagctacaggaggcaggtgacagttctccggttgaa tttgaatgtattcaccctgaaaaaaaaagaaaaaagaagagttacaaaaactctggcattattagattgaaatcctgcaa gattgaaacagaatattcgttcctggattatatcatgggtggttgccaaattaatttcactgtggggatagattttactg gctccaatggaaatccaaagtcaccagattctcttcactatattagtccaaatgggataaatgaatatctcagtgctatc tggtgtgtgggtggtgtggtccaggattatgacac |
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| Transcript ID | habu1_s3273_g11224.t2 |
| Definition | - |
>habu1_s3273_g11224.t2 tacccagcaattgggttttgtttttgttttttcatttttggtcactgtcttgttattgttgactatgcaattgagaaggc tttagctaacaggatccattccattgatgcttttagtgaataacatccaaaaatggctcactgcgtgaccaaggtggaac tgtccatttcctgtgacaacctgattgataaagatgttggctcaaaatctgatcctctgggtgtcttgcttcaaaatgtt ggtggtgatcagtggactgaattggatcgaactgaaaaaataaagaattgccagaatcctcaattttcaaaaaagctgct aattgattattattttgagaaagttcaaaagctgaaatttggtatatatgatattgataataagtcatatgacttaagtg atgatgattatcttggaggtgctgaatgtaccttgggtcagattgtatcaagtaaaatacttgttcagcctttaatgttg aagaaaggaaagcctgcaggaaaaggcactattacgatttgtgcagaagagattaaagataccagagttgtttctattga tgttgaagctcggaatttagacaaaaaggacttcttaggcaaatcagacccatttttggaattctataaacagagtgata gtggaaaatggcaacttgtataccgatcagaggtaattaagaacaatttaaatccttcctggaaaaaattcagcgtacct ttgcaaacattttgtagcggtgacttcaacaggcaaatcaaggtgcactgttatgattatgatagtgatgggtcacatga tttaataggcagttttgaaagtaccctgtcccagctacaggaggcaggtgacagttctccggttgaatttgaatgtattc accctgaaaaaaaaagaaaaaagaagagttacaaaaactctggcattattagattgaaatcctgcaagattgaaacagaa tattcgttcctggattatatcatgggtggttgccaaattaatttcactgtggggatagattttactggctccaatggaaa tccaaagtcaccagattctcttcactatattagtccaaatgggataaatgaatatctcagtgctatctggtgtgtgggtg gtgtggtccaggattatgacac |
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| Transcript ID | habu1_s3273_g11224.t3 |
| Definition | - |
>habu1_s3273_g11224.t3 accgttcatactgctttgggaactacataaagcagttgaatgttcatatctaccactgtgtgcatatggctcactgcgtg accaaggtggaactgtccatttcctgtgacaacctgattgataaagatgttggctcaaaatctgatcctctgggtgtctt gcttcaaaatgttggtggtgatcagtggactgaattggatcgaactgaaaaaataaagaattgccagaatcctcaatttt caaaaaagctgctaattgattattattttgagaaagttcaaaagctgaaatttggtatatatgatattgataataagtca tatgacttaagtgatgatgattatcttggaggtgctgaatgtaccttgggtcagattgtatcaagtaaaatacttgttca gcctttaatgttgaagaaaggaaagcctgcaggaaaaggcactattacgatttgtgcagaagagattaaagataccagag ttgtttctattgatgttgaagctcggaatttagacaaaaaggacttcttaggcaaatcagacccatttttggaattctat aaacagagtgatagtggaaaatggcaacttgtataccgatcagaggtaattaagaacaatttaaatccttcctggaaaaa attcagcgtacctttgcaaacattttgtagcggtgacttcaacaggcaaatcaaggttacagttagtgatatggatgaca acaccagttcagacttgataggggaattcatatgcaacgtctcaaagctgttggaagtgcactgttatgattatgatagt gatgggtcacatgatttaataggcagttttgaaagtaccctgtcccagctacaggaggcaggtgacagttctccggttga atttgaatgtattcaccctgaaaaaaaaagaaaaaagaagagttacaaaaactctggcattattagattgaaatcctgca agattgaaacagaatattcgttcctggattatatcatgggtggttgccaaattaatttcactgtggggatagattttact ggctccaatggaaatccaaagtcaccagattctcttcactatattagtccaaatgggataaatgaatatctcagtgctat ctggtgtgtgggtggtgtggtccaggattatgacac |
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Protein
| Protein ID | habu1_s3273_g11224.t1 |
|---|---|
| Definition | - |
>habu1_s3273_g11224.t1 MAHCVTKVELSISCDNLIDKDVGSKSDPLGVLLQNVGGDQWTELDRTEKIKNCQNPQFSKKLLIDYYFEKVQKLKFGIYD IDNKSYDLSDDDYLGGAECTLGQIVSSKILVQPLMLKKGKPAGKGTITICAEEIKDTRVVSIDVEARNLDKKDFLGKSDP FLEFYKQSDSGKWQLVYRSEVIKNNLNPSWKKFSVPLQTFCSGDFNRQIKVHCYDYDSDGSHDLIGSFESTLSQLQEAGD SSPVEFECIHPEKKRKKKSYKNSGIIRLKSCKIETEYSFLDYIMGGCQINFTVGIDFTGSNGNPKSPDSLHYISPNGINE YLSAIWCVGGVVQDYD |
|
| Protein ID | habu1_s3273_g11224.t2 |
| Definition | - |
>habu1_s3273_g11224.t2 MAHCVTKVELSISCDNLIDKDVGSKSDPLGVLLQNVGGDQWTELDRTEKIKNCQNPQFSKKLLIDYYFEKVQKLKFGIYD IDNKSYDLSDDDYLGGAECTLGQIVSSKILVQPLMLKKGKPAGKGTITICAEEIKDTRVVSIDVEARNLDKKDFLGKSDP FLEFYKQSDSGKWQLVYRSEVIKNNLNPSWKKFSVPLQTFCSGDFNRQIKVHCYDYDSDGSHDLIGSFESTLSQLQEAGD SSPVEFECIHPEKKRKKKSYKNSGIIRLKSCKIETEYSFLDYIMGGCQINFTVGIDFTGSNGNPKSPDSLHYISPNGINE YLSAIWCVGGVVQDYD |
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| Protein ID | habu1_s3273_g11224.t3 |
| Definition | - |
>habu1_s3273_g11224.t3 MAHCVTKVELSISCDNLIDKDVGSKSDPLGVLLQNVGGDQWTELDRTEKIKNCQNPQFSKKLLIDYYFEKVQKLKFGIYD IDNKSYDLSDDDYLGGAECTLGQIVSSKILVQPLMLKKGKPAGKGTITICAEEIKDTRVVSIDVEARNLDKKDFLGKSDP FLEFYKQSDSGKWQLVYRSEVIKNNLNPSWKKFSVPLQTFCSGDFNRQIKVTVSDMDDNTSSDLIGEFICNVSKLLEVHC YDYDSDGSHDLIGSFESTLSQLQEAGDSSPVEFECIHPEKKRKKKSYKNSGIIRLKSCKIETEYSFLDYIMGGCQINFTV GIDFTGSNGNPKSPDSLHYISPNGINEYLSAIWCVGGVVQDYD |
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