Gene
| Gene Model ID | habu1_s3273_g11225 |
|---|---|
| Locus | habu1_scaffold3273 : 42991 ... 55995 : - |
| To GenomeBrowser | habu1_scaffold3273:42991..55995 |
| Genes list of scaffold | habu1_scaffold3273 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 12 isoform x1 | GO:0000166 GO:0005634 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3273_g11225.t1 | 5 | 1 | RRM_6 | 5 | 69 | 0.0 | 168.2 | 4.8e-08 | 0.00024 | 21.0 |
| habu1_s3273_g11225.t1 | 5 | 2 | RRM_6 | 304 | 369 | 0.0 | 168.2 | 3.7e-12 | 1.8e-08 | 34.2 |
| habu1_s3273_g11225.t1 | 4 | 1 | RRM_1 | 305 | 358 | 4.4e-32 | 109.5 | 8.4e-06 | 0.041 | 13.5 |
| habu1_s3273_g11225.t1 | 5 | 3 | RRM_6 | 428 | 497 | 0.0 | 168.2 | 9.7e-12 | 4.8e-08 | 32.8 |
| habu1_s3273_g11225.t1 | 4 | 2 | RRM_1 | 428 | 496 | 4.4e-32 | 109.5 | 1.1e-09 | 5.5e-06 | 25.9 |
| habu1_s3273_g11225.t1 | 5 | 4 | RRM_6 | 543 | 610 | 0.0 | 168.2 | 8.9e-11 | 4.4e-07 | 29.7 |
| habu1_s3273_g11225.t1 | 4 | 3 | RRM_1 | 544 | 610 | 4.4e-32 | 109.5 | 6.1e-12 | 3.0e-08 | 33.1 |
| habu1_s3273_g11225.t1 | 2 | 1 | RRM_5 | 577 | 611 | 9.3e-15 | 54.2 | 4.9e-07 | 0.0024 | 17.6 |
| habu1_s3273_g11225.t1 | 5 | 5 | RRM_6 | 806 | 875 | 0.0 | 168.2 | 1.4e-15 | 7.0e-12 | 45.1 |
| habu1_s3273_g11225.t1 | 4 | 4 | RRM_1 | 806 | 875 | 4.4e-32 | 109.5 | 1.4e-10 | 7.1e-07 | 28.7 |
| habu1_s3273_g11225.t1 | 2 | 2 | RRM_5 | 838 | 875 | 9.3e-15 | 54.2 | 2.7e-06 | 0.013 | 15.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3273_g11225.t1 | gi|602645297|ref|XP_007429088.1| | PREDICTED: RNA-binding protein 12 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s3273_g11225.t1 | gi|557319613|ref|XP_006032969.1| | PREDICTED: RNA-binding protein 12-like isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s3273_g11225.t1 | gi|564255695|ref|XP_006266818.1| | PREDICTED: RNA-binding protein 12 [Alligator mississippiensis] | 0.0 |
| habu1_s3273_g11225.t1 | gi|541956315|ref|XP_005433963.1| | PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Falco cherrug] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.7 |
| Venom grand-1 | 4.5 |
| Pit, infrared sensing | 5.7 |
| Nose | 6.8 |
| Brain-1 | 5.9 |
| Eye | 5.0 |
| fetal fibroblast | 16.3 |
| venom gland-2 | 11.7 |
| Brain-2 | 5.3 |
| Spleen | 5.8 |
| Lung | 6.1 |
| Liver | 4.2 |
| Kidney | 3.8 |
| Pancreas | 3.4 |
| Small intestine | 3.8 |
| Large intestine | 4.7 |
| Stomach | 4.1 |
| heart | 4.6 |
| ovary | 11.5 |
| cheek muscle | 10.2 |
Transcript
| Transcript ID | habu1_s3273_g11225.t1 |
|---|---|
| Definition | - |
>habu1_s3273_g11225.t1 gtccccgtagtatattagtcttggcgcgcaggtttgtgttgtttctatgaatggctgagctggctccgggcagtgaagat ttgcctatgggcctcgtcgttttgtaaccccgtttcttgtggggtagtctaaaagttggttttaattggttgcccacagg attgacttggcttctactacttgttaaggaaaaaaaaaagtctcaccttgcaggtgtgtgtatttcagcgcagcatggct gtggtcatccgcttacaaggtctcccaattgtggcggggactatggacattcgtcacttcttctctggattgaccattcc tgatgggggcgtgcatattgtagggggtgagctgggtgaggctttcatcgtctttgccactgatgaagatgcaaggcttg gtatgatgcgcacaggtggtaccattaaagggtccaaagtcaccctgttgctaagcagtaaaactgaaatgcaaaacatg attgaactcagtcgtaggcgttttgaaacagcaaatctagatataccgccagcaaatgctagcagatctgttccaccacc tagttctggaataagtagtagggtgactctttctactacagtatctaattttaacagcccttctcctagtgtagtaactg cagctacttcagttcacgaaagcaacaaaaacataccaacattttccactgctagtatgggaactgcacctcctaatatg ggtgttacttttggaagtcccacttttagctctactatatctagtactgcatcgccaatgaacacagttccacctccacc aatacctcctattccagctttaccgtcattgcccccaatgccttctattcctcccatacctgttccgcctcctgttccta cattgcctcctgtgcctcctgtccccccaatacctcctgtgcctcctgtcccacctatgacatctctgcctcctttatca ggaatgcctcctatgaatcccccacctgttgctcctttgcctgctggaatgaatgggtctggaacagcaatgaatttaag cagtaacttgaatccaatgttcatgaatcctataaatgctattcagatcaattctcaaagtagcatgaaatctcttccta tcaatccagacgatttgtatgtcagtgttcatggaatgccattttcagcaacagagtctgatgtcaaagattttttccat ggactccgtgtggatgcagtacatattctgaaagatcatgtgggacgcaataatggaaatggactagttaagttttgctc tcctcaagatacatttgaagccttgaaaagaaacaggatgctgatgattcagcgttatgtcgaagttagtccggcaacag agagacagtgggtttctgcaggaggtcatataacattcaagcaaactatggctccttctggacaaaaccatcctcctcaa actctctctatgtccaaatctcctaatggacagaaaagatcaagatccaggtctcctcatgatcagggcttctgcgttta tttgaaaggtcttccctttgaatctgagaacaaacatgtaattgatttctttaaaaaactagatattgtggaagacagca tttacatagcttatggacccaatgggaaagcacttggtgaaggttttgttgaattcagaaatgaaactgactacaaagca gctttgtgtcatcataaacagtacataggaaatcgtttcattcaagttcatcccataactaaaaaagctatgttagaaaa aatagatatgattcggaaaagactacagaatttcaactatgatcagagagaaattatgataaatgcagaaggagagacga acccatctaaactctgtgcacatatatctaatatcccctacaatattaccaaaatggaaattcttcaatttcttgagggg ctggccatagaggaaaattctatacagatacttgttgatactaatggacaaggattaggacaagcactggtccaattcaa aactgaagaagatgctcgtaagtcagagcgcctacatcgaaagaaactgaatgggagagatgttgtgttgagagtgattt ctcttgaagaaatgagagaaattgagagaaatcctccctctcaagggaaaaaaatgttgaaaatgccattgcaagggagt acagcaatgccaggagtacaaaatgctggtggggatgagcattctttcataagtggtagttcaaaagatgcaaagagtgg tcctccttttcattttcctggcaatttcagtggttctaatgtatttggtcctcctcttccaccaccaggaatagggggag gttttggtgactccagaccaggaatgcctgctatgggaagcagtggcttgcctgttcttcctggcacaggtattgatgtc ccaggttttggaggtgggcctggtaatttaacaggaccctctagttttggaggaggtcctcagaattttgggaatggtcc tggtaatttaactggtcctcctagttttggtagtggacctccaggtcttagtagtgggctaggacatataagtggacctc cggggtttggacctggacctggaaacatgcatattactgggccacctgggtttggagctggctctggtaagcccgggcct actgtcattaaagttcaaaatatgccctttactgtatcagtggatgaaattttggattttttctatggttatcaagttat cccaggttcagtgtgtttaaaatacaatgagaaaggcatgcctaccggtgaagcaatggttgcatttgaatctcgtgatg aagcaatggcagctgttgttgatctgaatgacagaccaataggctcacgaaaagtcaaacttgttctaggttagttggag tataacatccttgtagactagatattagtgctgtgatttacgcattcagactgttttatagtagctccagatagaaacca taatttgtttaaattacaaatttgttttgataaaaaagagaacactggtttaactgtttacagaacaattgctgcaagag aaaatatgcaccagagtggatgtgcagttctgccagtacagatacatggagaaagattctcatcaatagagaagtttttt aatgtcaattgaccatgaaatattcatcatggagtccagattggtttcttgaaagttaggaaagttgaagaaaattgtca tgatgaagatagttgatctcttagtgggtgctgttgaagccattgtaaaatagaaactagatattcctagagttggttaa aagctgactgaatttctttgtctacacaagtcaaagatttttctgtttttaaagtcttactttgcaactgaataaagtca aagtatacacagattgtttttgtgcttgttttcaaagattcttggtgtatgaacagtgaaattacagagataggcggttt tcctatatatgaacagaacaatccgtaaaattccagctttttttgtggaataattttagtttttattgcaactgattata tagaatataagatatttgccacaagtgcaggtacccttgttgtcgttctgcatttttattcactgtatgattaaaatgaa tacgtgaaggtgccatgcaatgccataacttgaaaaaaaatgtttgattagatggttttgttaggattgtatgttacagt tggaataggatgcttatcatttggtttttgtatactgtgtatgttgtgtatctttttgaatcacattcttataaaatctc ttggtttaatacatgaacataagggactgatgcgaagtgttaatgttagtaatcatttgtgttactattacttcttgaac tcttgtgaattattactatggatcacttaagacattaaagctttgcaaacatatcccagtacatttgagttcttacagtc tttacaatggcttatattttcactttcaatctctatgtagtgttgttttttttagtaggattttcttaggaaagagaaga tactattatatagaaaaatcaaagtagaaatttggactattcatgattaaagtttaaaaatagaaagattgaaataagtt gtttgaaaaaccctttgaaaatcattgtattttaaacaacttaaaagctattatgttcctagttaaacagtgtcttttga gttgtgtatgatagaacatttgaagtgcacagcctgttttgatatagaaatgcaagtggcgactgttctattcatccagt gtgtcagatggatgcaaaagcctattgaatgctacatcaggggaggatttttgcagttcagtaattctttgaaagactgt gtgaaggtgttgcaatgaagaggtggctgcattacaactattgtaattcatggatttgaaattgctttgacaggaactga gatggtgcactcctgaaaaaatgacatgattgattgtactacactgttaaacgtactaagcctcttgttaataaaactgt ctttctgaagatttgagctatctatttttaattgtttggtgtacttcaacaacaaaggccaataaaaatacagagttttg gttggtgatatgactaggaaatgaaaatttctttttattttgaaaatcgttaattatgggggggggagtgttttctgtga agcaaaaaatctcagttgaatccagattagatgttccagaaataaagccccatttatttatgggtgaaagggaatggaga gacagtttcattgattttctgttttgctacaccttgaatatggtctctggtaagttcccatgtcttcaaagacacatttt caggagacaaaggaatcattcagaaattgcctcattgtttcttttcagtacatgggggtccagctcactgaacaataaaa ttgagaggttgaatcaaaaaa |
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Protein
| Protein ID | habu1_s3273_g11225.t1 |
|---|---|
| Definition | - |
>habu1_s3273_g11225.t1 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKTEMQ NMIELSRRRFETANLDIPPANASRSVPPPSSGISSRVTLSTTVSNFNSPSPSVVTAATSVHESNKNIPTFSTASMGTAPP NMGVTFGSPTFSSTISSTASPMNTVPPPPIPPIPALPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPPVPPMTSLPP LSGMPPMNPPPVAPLPAGMNGSGTAMNLSSNLNPMFMNPINAIQINSQSSMKSLPINPDDLYVSVHGMPFSATESDVKDF FHGLRVDAVHILKDHVGRNNGNGLVKFCSPQDTFEALKRNRMLMIQRYVEVSPATERQWVSAGGHITFKQTMAPSGQNHP PQTLSMSKSPNGQKRSRSRSPHDQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKALGEGFVEFRNETDY KAALCHHKQYIGNRFIQVHPITKKAMLEKIDMIRKRLQNFNYDQREIMINAEGETNPSKLCAHISNIPYNITKMEILQFL EGLAIEENSIQILVDTNGQGLGQALVQFKTEEDARKSERLHRKKLNGRDVVLRVISLEEMREIERNPPSQGKKMLKMPLQ GSTAMPGVQNAGGDEHSFISGSSKDAKSGPPFHFPGNFSGSNVFGPPLPPPGIGGGFGDSRPGMPAMGSSGLPVLPGTGI DVPGFGGGPGNLTGPSSFGGGPQNFGNGPGNLTGPPSFGSGPPGLSSGLGHISGPPGFGPGPGNMHITGPPGFGAGSGKP GPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVDLNDRPIGSRKVKLVLG |
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