Gene
| Gene Model ID | habu1_s3274_g11229 |
|---|---|
| Locus | habu1_scaffold3274 : 32945 ... 66045 : - |
| To GenomeBrowser | habu1_scaffold3274:32945..66045 |
| Genes list of scaffold | habu1_scaffold3274 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 39 isoform x1 | GO:0000166 GO:0003723 GO:0005634 GO:0006397 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3274_g11229.t2 | 2 | 1 | RRM_1 | 155 | 220 | 1.40004e-41 | 139.9 | 2.3e-14 | 5.8e-11 | 41.8 |
| habu1_s3274_g11229.t2 | 2 | 1 | RRM_6 | 155 | 207 | 8.6e-30 | 102.5 | 8.9e-12 | 2.2e-08 | 33.9 |
| habu1_s3274_g11229.t2 | 3 | 1 | RRM_5 | 171 | 217 | 5.2e-24 | 83.8 | 3.0e-07 | 0.00073 | 19.3 |
| habu1_s3274_g11229.t2 | 2 | 2 | RRM_1 | 252 | 322 | 1.40004e-41 | 139.9 | 4.2e-28 | 1.0e-24 | 85.9 |
| habu1_s3274_g11229.t2 | 2 | 2 | RRM_6 | 252 | 320 | 8.6e-30 | 102.5 | 1.7e-19 | 4.2e-16 | 58.6 |
| habu1_s3274_g11229.t2 | 3 | 2 | RRM_5 | 268 | 323 | 5.2e-24 | 83.8 | 8.1e-15 | 2.0e-11 | 43.5 |
| habu1_s3274_g11229.t2 | 1 | 1 | RBM39linker | 339 | 434 | 1.3e-23 | 83.0 | 8.3e-26 | 2.1e-22 | 79.2 |
| habu1_s3274_g11229.t2 | 3 | 3 | RRM_5 | 444 | 488 | 5.2e-24 | 83.8 | 1.5e-06 | 0.0038 | 17.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3274_g11229.t2 | gi|118100450|ref|XP_425690.2| | PREDICTED: RNA-binding protein 39 isoform X18 [Gallus gallus] | 0.0 |
| habu1_s3274_g11229.t2 | gi|704200377|ref|XP_010141968.1| | PREDICTED: RNA-binding protein 39 [Buceros rhinoceros silvestris] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 22.5 |
| Venom grand-1 | 38.4 |
| Pit, infrared sensing | 25.0 |
| Nose | 22.1 |
| Brain-1 | 13.3 |
| Eye | 19.3 |
| fetal fibroblast | 19.6 |
| venom gland-2 | 28.3 |
| Brain-2 | 11.5 |
| Spleen | 27.7 |
| Lung | 26.6 |
| Liver | 29.2 |
| Kidney | 22.9 |
| Pancreas | 26.2 |
| Small intestine | 22.0 |
| Large intestine | 26.3 |
| Stomach | 24.5 |
| heart | 19.4 |
| ovary | 24.9 |
| cheek muscle | 19.4 |
Transcript
| Transcript ID | habu1_s3274_g11229.t1 |
|---|---|
| Definition | - |
>habu1_s3274_g11229.t1 aatcgatttgtatggaaatctcgcgagagcccgtgcagcaaggtctgggcatccccatagcggcaacacagatcctccta caagcatccaagacgcggcgggcgccatttcagggagcagtcgcctttgctaaagcggagtctgtgtgttcttgttgcga agcttccttggctttgctcgtactaatttttcgagatcattcttagtctagctttttgcctgctgctgttgctgagataa tttttttgtttaagggccagcgcccctcctcacgcgtatccagacccagggagacaaacgacggccgtggcagtatccct ccgcctcataaacacctgggccagaagcgagaggccggcagcgcaggtgtcctgaaaaatggctgatgatattgatattg aagcaatgctcgaagccccctttaagaaggatgagaacaaattgagcagtgccaatggacatgaagagcgaagtaagaag aggaaaaaaagcaagagcagaagtcgtagtcatgataggaagagaagccgaagcaaggaccgcaaacgaagccgtgaacg tgaaagaaagaaaagcaagagtcgagaaagaaagcgcagtaaaagtaaagaacggagacgcagccgttcaagaagcagag aacgtcgattcagaggccgttacagaagtccctattctggacccaagttcaatagtgccatgagaggaaaaattggcttg ccacacagcatgaaaataagcagacgtcgatctaggagcaaaagtcctttcagaaaagacaagagtcctgtaagagagcc tattgataatcttactccagaggaacgggatgctcgaacagtattctgtatgcagcttgctgcaagaattaggccaagag acctggaagaatttttctctactgtaggaaaggtccgtgatgtacgcatgatatcagatagaaattcaaggcgttcaaaa ggaattgcttatgtagaatttgttgatgtcagctcagttcctttagccattggattaactggacagcgagttttgggagt gccaattattgtacaagcatctcaggcagagaaaaacagagcagcagcaatggctaataatttacaaaagggaagtgcag gccccatgagactctatgtaggctcattacatttcaatataactgaagatatgcttcgtggaatctttgaaccgtttggc cggattgaaagcattcagctaatgatggatagtgaaactgggaggtccaaaggatatggatttattactttttcagactc agaatgcgctaaaaaggccttagaacaattaaatggatttgaactggcaggtaggccaatgaaagtaggacatgtgactg aacgtacagatgcatccagtgccagttcatttttggacagtgatgaattggaaaggactggaattgatttgggaacaact ggtcgtcttcagttgatggcaaggcttgctgagggtactggtttacagatccctccagctgcccagcaagcgctgcaaat gagtggatcattagcatttagtgctgtagcagatttacagacaagactgtctcagcaaagtgaagtcttagctgcagctg cttctgtacaaccacttgcaacacaatgctttcagctgtccaatatgtttaatccccaaactgaagaagaagctggctgg gatacagaaattaaagatgatgtgattgaagaatgtaacaagcatggaggtgttgtccacatttatgtagacaaaaattc aactcagggcaacgtatatgtcaaatgcccctcaatagctgcagcaattgcagctgtcaatgcattacatggaagatggt ttgcaggtaaaatgatcacagcagcatatgttcctcttccgacgtaccataatcttttcccagattctatgaccgcaacc cagctcttggttccaactcggcgatgaagaaggattgagtcagttttgtacatagctatttttgaacgaagacttgagtt acctttatttagatgaaaacaaaaggaaaaagatgtaaagtccttttgtgtacatttcctgttacctttaaagaaatata tataataagcaggaatgctgtgattattctcatgattagcattcccactgtaaacaaagctgactacttgttctgccttg taattcttgtacatttagacttttggctaaagtatggtgtaggaacagacataggttatagaaaagtttttttctgtaaa agatggagaggacatttttaatgttttgcgagccttccttttaatgcagaaattgcattttacatttattaaaatgaata tgctctgctaaaggttaaaatcagatttaactggacatatttggtgtgttttgtatggattgaaatttgaagaggctact gaatgattttcagtcatctgatctgcccaagtaatgttgaacagctggaaagattgagaggattagaagattttatttct agatggtaacttttgattgtctctgtaaaagtttcttgtaaataaggtgtaaggtgtgtttagaattccaaacaaagcta tctctgcatttccagattaaagttccaatgattgcagggaatgtacttaattaaaagttgaagtaggaaatgcaggaata tattttgtctggttgcatataatctctgctcttttttaagctctgtgagctctgaaatatatttttgggttacttcagtg tgtttgacaaaacagcttaatatttctatcaacaaacaactttcatattgcaacaatctttgtaagaaccactcaaataa aattctctcaaaggcctccagaagaattattttttataaaactgaagattaactttagtcaacattaaatctctttaggt gagccagaagcctgatttgtaatttacgtttacagaatgaatcagcagtatagttaaattttagagcaatccttatgctt aacagaaacatctacatatatttccttattaagacttttcaagtatctgtttgaggaagtctcctttggtgcttttcttc acttttcttttgctgcacagtacagaaccattcaaagaatgtcttgcattttaagaacaattacagttttcaagatatag gtggggggaacctgcatatttttatggccggttatttccttctatagctgttggtcaggtaaactgatttcatttccaag ttgaatttgatttagatgttttgagtcttaaagaaggaaggttctagtgaatctaaaagtcaaaagttgaaaaatcctga ttcagaagttttattaaaaacaatatattgtttaaaataagacatgcccatgacaaaaataataaatttctgagctctat tgctatattttgtttattgcataaggaagattgcatattttaactaattacccacttggattaaaaaaaattatgggtgt cagtataagaaaaatgaacattttgaaaaacacttgaaacatacttgagattgacagatttaaatttctgacataccttg cagaatatgtcagttatttttggggaacaacatggagtaaagtgcattatttgttcgaagtttgttttgggactgaaaat cattttcagatctcatttttatccaagaaagtgcatatcttacatattttggtgggcagtattctgttgctcaattcttg gtacaagttgatcatgagcaattgaaactttatattatgtaaatagatagtataggacatgataaaattatttatttaaa caggttgaccaccaaaattactgctgtgctaaattacaaaaaactaagtttgttggaaggactacccagtttgaagatgt ataagaaatgcatgcagttatatatccaatattcctgctagaacagtctgtttccatcgcataccattgacatccttgcc ttgaaaaccattgaggcacattatgtaacgcaaagctttctaagagacagaagaatcaatagctgactattttaagacct atacagtactaatttggcctgagctcatagataccagtgctgttatgaacctgtctcattttacttactacccaccagtc agctcattgcagatactgtaacagctttgttttttatggtataaatattaatagttgtaatgacacggagagataatgag aattttattccaattttcataatccttcccctttaacaacatatttcttttatctaacatgattctcctatgtttttcaa attaagattattcttgttattttctggctcatgcccatagttttgtaaatacttttcctatttgtatagctcagtaataa gcttattgaaggtcacatgcttgccagaaataaagaataatcttcagatagtggacctgaatgtcatagtgtctgaaacg ttgatagaatgaggtctagctttgtaaatacaagaatactgtgaacgttgagtttgctgtaatcaacttaatattcctac tcccaaccctttcaaagggaagtatttttctaaaaatgtgatcacttatcttgctttcattttaaaaaatcttttcattc agttacaaatgttgcttccttacaccttactgtcttacggcaattatttaataataaataattagtaagttacttatgac |
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| Transcript ID | habu1_s3274_g11229.t2 |
| Definition | - |
>habu1_s3274_g11229.t2 aatcgatttgtatggaaatctcgcgagagcccgtgcagcaaggtctgggcatccccatagcggcaacacagatcctccta caagcatccaagacgcggcgggcgccatttcagggagcagtcgcctttgctaaagcggagtctgtgtgttcttgttgcga agcttccttggctttgctcgtactaatttttcgagatcattcttagtctagctttttgcctgctgctgttgctgagataa tttttttgtttaagggccagcgcccctcctcacgcgtatccagacccagggagacaaacgacggccgtggcagtatccct ccgcctcataaacacctgggccagaagcgagaggccggcagcgcaggtgtcctgaaaaatggctgatgatattgatattg aagcaatgctcgaagccccctttaagaaggatgagaacaaattgagcagtgccaatggacatgaagagcgaagtaagaag aggaaaaaaagcaagagcagaagtcgtagtcatgataggaagagaagccgaagcaaggaccgcaaacgaagccgtgaacg tgaaagaaagaaaagcaagagtcgagaaagaaagcgcagtaaaagtaaagaacggagacgcagccgttcaagaagcagag aacgtcgattcagaggccgttacagaagtccctattctggacccaagttcaatagtgccatgagaggaaaaattggcttg ccacacagcatgaaaataagcagacgtcgatctaggagcaaaagtcctttcagaaaagacaagagtcctgtaagagagcc tattgataatcttactccagaggaacgggatgctcgaacagtattctgtatgcagcttgctgcaagaattaggccaagag acctggaagaatttttctctactgtaggaaaggtccgtgatgtacgcatgatatcagatagaaattcaaggcgttcaaaa ggaattgcttatgtagaatttgttgatgtcagctcagttcctttagccattggattaactggacagcgagttttgggagt gccaattattgtacaagcatctcaggcagagaaaaacagagcagcagcaatggctaataatttacaaaagggaagtgcag gccccatgagactctatgtaggctcattacatttcaatataactgaagatatgcttcgtggaatctttgaaccgtttggc cggattgaaagcattcagctaatgatggatagtgaaactgggaggtccaaaggatatggatttattactttttcagactc agaatgcgctaaaaaggccttagaacaattaaatggatttgaactggcaggtaggccaatgaaagtaggacatgtgactg aacgtacagatgcatccagtgccagttcatttttggacagtgatgaattggaaaggactggaattgatttgggaacaact ggtcgtcttcagttgatggcaaggcttgctgagggtactggtttacagatccctccagctgcccagcaagcgctgcaaat gagtggatcattagcatttagtgctgtagcagatttacagacaagactgtctcagcaaagtgaagtcttagctgcagctg cttctgtacaaccacttgcaacacaatgctttcagctgtccaatatgtttaatccccaaactgaagaagaagctggctgg gatacagaaattaaagatgatgtgattgaagaatgtaacaagcatggaggtgttgtccacatttatgtagacaaaaattc aactcagggcaacgtatatgtcaaatgcccctcaatagctgcagcaattgcagctgtcaatgcattacatggaagatggt ttgcagttgagtcatactgaatgatggatattcattgtaggaatgaaatgtaaaatgatcacagcagcatatgttcctct tccgacgtaccataatcttttcccagattctatgaccgcaacccagctcttggttccaactcggcgatgaagaaggattg agtcagttttgtacatagctatttttgaacgaagacttgagttacctttatttagatgaaaacaaaaggaaaaagatgta aagtccttttgtgtacatttcctgttacctttaaagaaatatatataataagcaggaatgctgtgattattctcatgatt agcattcccactgtaaacaaagctgactacttgttctgccttgtaattcttgtacatttagacttttggctaaagtatgg tgtaggaacagacataggttatagaaaagtttttttctgtaaaagatggagaggacatttttaatgttttgcgagccttc cttttaatgcagaaattgcattttacatttattaaaatgaatatgctctgctaaaggttaaaatcagatttaactggaca tatttggtgtgttttgtatggattgaaatttgaagaggctactgaatgattttcagtcatctgatctgcccaagtaatgt tgaacagctggaaagattgagaggattagaagattttatttctagatggtaacttttgattgtctctgtaaaagtttctt gtaaataaggtgtaaggtgtgtttagaattccaaacaaagctatctctgcatttccagattaaagttccaatgattgcag ggaatgtacttaattaaaagttgaagtaggaaatgcaggaatatattttgtctggttgcatataatctctgctctttttt aagctctgtgagctctgaaatatatttttgggttacttcagtgtgtttgacaaaacagcttaatatttctatcaacaaac aactttcatattgcaacaatctttgtaagaaccactcaaataaaattctctcaaaggcctccagaagaattattttttat aaaactgaagattaactttagtcaacattaaatctctttaggtgagccagaagcctgatttgtaatttacgtttacagaa tgaatcagcagtatagttaaattttagagcaatccttatgcttaacagaaacatctacatatatttccttattaagactt ttcaagtatctgtttgaggaagtctcctttggtgcttttcttcacttttcttttgctgcacagtacagaaccattcaaag aatgtcttgcattttaagaacaattacagttttcaagatataggtggggggaacctgcatatttttatggccggttattt ccttctatagctgttggtcaggtaaactgatttcatttccaagttgaatttgatttagatgttttgagtcttaaagaagg aaggttctagtgaatctaaaagtcaaaagttgaaaaatcctgattcagaagttttattaaaaacaatatattgtttaaaa taagacatgcccatgacaaaaataataaatttctgagctctattgctatattttgtttattgcataaggaagattgcata ttttaactaattacccacttggattaaaaaaaattatgggtgtcagtataagaaaaatgaacattttgaaaaacacttga aacatacttgagattgacagatttaaatttctgacataccttgcagaatatgtcagttatttttggggaacaacatggag taaagtgcattatttgttcgaagtttgttttgggactgaaaatcattttcagatctcatttttatccaagaaagtgcata tcttacatattttggtgggcagtattctgttgctcaattcttggtacaagttgatcatgagcaattgaaactttatatta tgtaaatagatagtataggacatgataaaattatttatttaaacaggttgaccaccaaaattactgctgtgctaaattac aaaaaactaagtttgttggaaggactacccagtttgaagatgtataagaaatgcatgcagttatatatccaatattcctg ctagaacagtctgtttccatcgcataccattgacatccttgccttgaaaaccattgaggcacattatgtaacgcaaagct ttctaagagacagaagaatcaatagctgactattttaagacctatacagtactaatttggcctgagctcatagataccag tgctgttatgaacctgtctcattttacttactacccaccagtcagctcattgcagatactgtaacagctttgttttttat ggtataaatattaatagttgtaatgacacggagagataatgagaattttattccaattttcataatccttcccctttaac aacatatttcttttatctaacatgattctcctatgtttttcaaattaagattattcttgttattttctggctcatgccca tagttttgtaaatacttttcctatttgtatagctcagtaataagcttattgaaggtcacatgcttgccagaaataaagaa taatcttcagatagtggacctgaatgtcatagtgtctgaaacgttgatagaatgaggtctagctttgtaaatacaagaat actgtgaacgttgagtttgctgtaatcaacttaatattcctactcccaaccctttcaaagggaagtatttttctaaaaat gtgatcacttatcttgctttcattttaaaaaatcttttcattcagttacaaatgttgcttccttacaccttactgtctta cggcaattatttaataataaataattagtaagttacttatgac |
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Protein
| Protein ID | habu1_s3274_g11229.t1 |
|---|---|
| Definition | - |
>habu1_s3274_g11229.t1 MADDIDIEAMLEAPFKKDENKLSSANGHEERSKKRKKSKSRSRSHDRKRSRSKDRKRSRERERKKSKSRERKRSKSKERR RSRSRSRERRFRGRYRSPYSGPKFNSAMRGKIGLPHSMKISRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQL AARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP MKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFSAVADLQTRLSQQ SEVLAAAASVQPLATQCFQLSNMFNPQTEEEAGWDTEIKDDVIEECNKHGGVVHIYVDKNSTQGNVYVKCPSIAAAIAAV NALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPTRR |
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| Protein ID | habu1_s3274_g11229.t2 |
| Definition | - |
>habu1_s3274_g11229.t2 MADDIDIEAMLEAPFKKDENKLSSANGHEERSKKRKKSKSRSRSHDRKRSRSKDRKRSRERERKKSKSRERKRSKSKERR RSRSRSRERRFRGRYRSPYSGPKFNSAMRGKIGLPHSMKISRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQL AARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP MKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFSAVADLQTRLSQQ SEVLAAAASVQPLATQCFQLSNMFNPQTEEEAGWDTEIKDDVIEECNKHGGVVHIYVDKNSTQGNVYVKCPSIAAAIAAV NALHGRWFAVESY |
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