Gene
| Gene Model ID | habu1_s3274_g11237 |
|---|---|
| Locus | habu1_scaffold3274 : 369649 ... 514665 : + |
| To GenomeBrowser | habu1_scaffold3274:369649..514665 |
| Genes list of scaffold | habu1_scaffold3274 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| chromodomain-helicase-dna-binding protein 6 isoform x3 | GO:0001221 GO:0003677 GO:0005524 GO:0005665 GO:0008094 GO:0036091 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3274_g11237.t1 | 2 | 1 | Chromo | 367 | 428 | 8.0e-25 | 86.2 | 7.7e-14 | 2.3e-10 | 39.9 |
| habu1_s3274_g11237.t1 | 2 | 2 | Chromo | 451 | 502 | 8.0e-25 | 86.2 | 3.3e-16 | 9.7e-13 | 47.5 |
| habu1_s3274_g11237.t1 | 1 | 1 | SNF2_N | 539 | 826 | 0.0 | 231.3 | 0.0 | 0.0 | 230.3 |
| habu1_s3274_g11237.t1 | 1 | 1 | Helicase_C | 893 | 972 | 6.2e-13 | 48.4 | 8.5e-16 | 2.5e-12 | 46.4 |
| habu1_s3274_g11237.t1 | 1 | 1 | BRK | 2472 | 2517 | 2.3e-17 | 62.1 | 3.3e-20 | 9.8e-17 | 60.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3274_g11237.t1 | gi|602625950|ref|XP_007419938.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 6-like [Python bivittatus] | 0.0 |
| habu1_s3274_g11237.t1 | gi|637297526|ref|XP_008108243.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 6 [Anolis carolinensis] | 0.0 |
| habu1_s3274_g11237.t1 | gi|641761608|ref|XP_008166367.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 6 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s3274_g11237.t1 | gi|530607623|ref|XP_005295493.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 6 isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s3274_g11237.t1 | gi|641761611|ref|XP_008166368.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 6 isoform X3 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.4 |
| Venom grand-1 | 1.4 |
| Pit, infrared sensing | 2.1 |
| Nose | 1.9 |
| Brain-1 | 6.3 |
| Eye | 2.2 |
| fetal fibroblast | 3.7 |
| venom gland-2 | 2.5 |
| Brain-2 | 7.0 |
| Spleen | 4.6 |
| Lung | 1.8 |
| Liver | 4.6 |
| Kidney | 3.3 |
| Pancreas | 8.6 |
| Small intestine | 1.9 |
| Large intestine | 2.1 |
| Stomach | 3.5 |
| heart | 4.6 |
| ovary | 1.9 |
| cheek muscle | 1.1 |
Transcript
| Transcript ID | habu1_s3274_g11237.t1 |
|---|---|
| Definition | - |
>habu1_s3274_g11237.t1 acgaccggtttagtcctcgacttacaaccggttggggtcgtggcattaaaaaggttgagaaccactggattagcaagtaa gcctatcccaaggagttcgtgcacaaaagagttaaaggaaatttatactggaactgtcaatcaaatctgaattatcaatc aggctgggcatgccctgggatgctaagcttacagaactccacagcccaagagccattttagattctaaaagcctccagac accaggacaagactttgactgcatcacttctatgatccgggtgacaatgtacaactgggaatcgtcaatgcagaaactgt ggcagagaggagacggatcttttcaagggcaatgtattgctcctggaaaagaagtaatatataccccaaaattgatgata atgaaaatacagaagaaagaaaaacagctgccaaattttaaagtgttgagtcattccccaatgtctgatgcctccatcac ctttgaatgcaagccacagaccccttttgatggaagtccagatcaggaagatttgagtgacttggtgacaatctctgact tggccagtgtgagcctggcccataaggaccatcaaaatgtgctatctgtggaggtacccagtgagattgtgcagaatatg ataacctgccataatgggatgcaggacgatgggggtgggggtactggggtaaaaaagaaacgaaagaaaaaagagctggg gcagcaagagatgggcaatgagagagaagtaaaaccaaagaggaaaagagaacctaaggaaccaaaagatccccaaaagc ccaaggagcccaaaaagcccaaggaacccaagcaggaaggggctaagaaacccaggaagcctcgggagcctaaagtccca aaggagtccaaagagaagaagaacatcttagagacttcctccaaagccaagcccaagaaatccagtatggatcaaggacc aactcctgttgaaaagaagaagaaaggaaaaaggaaaaatgacacatcacttgataatttagaattggatcaaggcctgc tttcattgtctggacaaaaccttgatgaatctgttgaatcagttgacagtcagaagcgccgttctggacgccaggtgaag cgtaggaagtacaatgaagatttggatttcaaggtggttgatgatgatggtgaaacaatagctgtgctgggtgctggccg agcttctgcactttctgcatctaccttggcttggcaagcagaggaacctcctgaggacgatgccaacatcattgagaaaa ttcttgcctccaggatggtgcagaaagagatttatcctggaggagcaacttatgaacaggaagagttctatgtaaagtac cgcaatttttcttatttgcactgtaaatgggccaccatggaggagctagaaaaagatccccggatctcccagaagattaa acgctttcgcaataaacaggcccaaatgaagcatattttcactgagcctgatgaagacctattcaatccagactatgtgg aagttgatagaatcctagaagtggctcacacaaaggactccgaaactggggaggaggtgactcactaccttgtgaagtgg tgctccttaccctatgaagaaagcacttgggagcttgaggaggatgttgatcctgggaagattaaagagtttgaatttct ccaaattccaccagaagttaaatccttggaccgtcctgcctcagagtcctggcaaaagctagagaagtctcgggactata agaacaacaaccaattgcgagaataccagctggagggaatgaattggctgctttttaactggtataacaggaaaaactgc attctggctgatgaaatgggtttggggaagacgatccagtccattacattcctctctgagatctatctgatgggtcttcg aggtccatttctcatcattgctccactttctaccatcacaaactgggagcgagagttccgcacttggaccgagttgaatg ccattgtgtatcatggtagccagataagccgccagatgatccagcaatatgagatggtttatcgggatatgcagggtatt cctcttcctgggctcttcaaattccaagtagttattaccacctttgagatgatcctggcagattgtccggagctgaagaa gatccactggcgctgtgtgattattgatgaggcccatcggctcaagaacaggaactgcaaattactggaaggattaaagc tcatgtgtctggaacacaaagtactgctgactgggacgcctctgcagaactcagtggaggagctcttcagcctactgaac ttcttggaaccacagcagttcccatctgagacagcctttcttgaggagtttggggatctcaaaacagaggaacaggtgaa gaaacttcagtccctcctaaaacccatgatgttgcgacggctgaaggatgatgtggagaagaatctagcacccaaacagg agaccataattgaagtagagctgaccaacatccagaagaaatactatcgagctatcctggagaaaaattttagctttcta tccaagggtgctaaccagcataacatgcccaatctcattaataccatgatggagttgcgcaagtgctgcaatcaccccta cctcattaatggagcagaggaaaagatcctagaagatttccgtaaaacccacaactcagaagctcctgacttccagttgc aggcaatgatccaggcagcaggcaagctggtgctgattgataagttgctgccaaagttgattgcaggcgggcacaaggtg ttgatcttctcccagatggtgcgctgccttgatatcctggaggattatctcatccagcggcgatatacttatgagcgcat tgatggccgggttcgtgggaatttacgtcaggctgcaatcgatcgcttctgcaagccagattcagaccgttttgttttct tgctctgcacaagggcaggagggctaggcatcaatcttactgctgctgatacctgtatcatcttcgactcagattggaat ccacagaatgatctgcaggctcaggctcgctgccaccgaatagggcaaagcaaggcagttaaagtctatcgcctcatcac cagaaattcctatgaacgagagatgtttgacaaggccagcttgaaactaggattagacaaggcagtgttgcaggatatca accgcaagggaagcaacaatggggtgcagcagctctccaagatggaggttgaagacttgttgcgaaaaggtgcttatggg gctttaatggatgaggaagatgaaggctccaaattctgtgaagaagatatcgaccaaatcctgcaacgtaggacccaaac catcactattcagactgaagggaaaggctccacattttccaaggccagctttgttgcttcaggaaacagaactgacattt cattagatgatcccaacttctggcagaaatgggcaaaaatagctgaactggatactgatgcaaaggatgaaaaggagagc ctggtgattgacaggccccgtgtccgtaggcaaaccaaacactacaactcctttgaggaagatgagctgatggagttctc agagctggacagtgactctgatgagcgacctacacgttcacggcgtctcaatgaaaaaacacgtcggtatttaagggctg aatgttttcgtgtggagaaaaatctgcttatatttggctggggacgttggaaagatattctgacccatggccggtttaaa tggcatcttaatgaaaaggatatggagatgatctgccgagcactgctggtctactgtgttagacattataagggagatga gaagattaagagttttatttgggatttgatcactccaacaaaggatgggcagaaccaagccctacagaaccattcaggat tatcagctccagtgccaagaggaaggaaggggaagaaaaccaagaatcaaatgctgctacctgagattaagaatgcagac tggcttactacttgcaatcctgaaatcatcctacatgatgatagctacaaaaagcatctgaaacaacactgcaataaagt gctgttgagagtacggatgctctattacttgaaagctgaagtgctgggggaggcagctgataaagcttttgaaggaaccc ctgccaaagatttagatgtcttgctgccggacattgactatgtggagattcctgtggactggtggaatgctgatgcagat aaatccctcctcattggagtttttaaacatggttatgaacggtacaatgcaatgcgagctgactcagctctgtactttct tgagaaagtcggcatgccagatgagaaactattgtgtgcagagcagaatgtcactgatggagtacaggatgctccagaac gaggaaatacagacaaagaagagagtagtgcagataaactagctggagtagacaaacaggaggaaatttctgatacttgt ggtccagatcctgagaagaaggatgacaatgtggcagcccaggatggctccgacccagacaaattcagctggcctgtgtc atctgctctcacagccagacttcgacgtcttgtcactatctatcagcgctgcaaccgcaaagaactgccgtctagacctg atgttattggaccttgtaaccatggctattggctccaagaggaaatgattaggcgagccaatgaaatggaccctatgaac aatgaaatacagaaaaggtggaccagaagagagcaagcagatttctatcgtactgtttcctcctttggggtcatttatga gccagaaaagaaagtctttgattggactcaattccgatccatttcgcgtttggagaagaaaactgatgaaagtttagaaa aatatttctataactttgttgctatgtgtaaaaatgtctgtcggttgccccactggaaagatgatggcccaacagatccc aatatttatgtggaacccatcacagaggaacgtgctgcaaagacgctgtatcgaattgaactcttacggaaggtccgtga gcaagtgttgaggtgtccacagttacatgaaaggctcaaactttgccgcccaagcctatacctccctgtgtggtgggaat gtggcaaacatgatcgggacctgctaattggtacggctaagcatgggctgaatcgcacagactattacataatgaatgat ccacagttatcgtttctggatgcctacagaaattatgctcagaataaaaggacaggggtccttggagaagaacacttgtg ctgtcaccaccaagcaaattctaaactatattactcgcctttgtataatcaagtagaaagaaagcaggcattagcagagg cagaaatagataactgtgctaagctaatgaactcagggaatgatcttttgcaggcagaaaacacctctcaggatggcagc tgtgaaaatttcatgtctaaggtccgaagtatgatttctgttaattacgatgagagttctttacctgattctttgtcatg cataatgtatgatgaaaaggcctgtaacagtgaacatagttcttttgctcgtgacagccctagctgcacagacatcagca gcaatgctaccaaaatggcagagggcaaaacagatggggacgaagatctctctagttgtgatgctgagaccatacgagaa tccacttacttggatcatttgcagtttggcagtgatcaattggaaagtcaaaatacaggacaggagctttcagagaagga gacaaagccttctgagagttttgctcaggaaacctgtaatgtccttcagcatatggaaaatcagtatattagcccaaaag cagttccatttgaaagagatggtgtggagagtgttctgagcataggggtctatagtcccagtcttcataattttgatatc aaagtacaacctgagaagagattgatgggcttattgcaggaaaagagtttggaggagaaattaatgcagagtcaaagcca tagtgaagaggaagaggaggaggaggaggaagaagaggaagaggaagatcatctagaagcagcaactgacattgtgaaag atagcagagaagccaaatgtagcacacaggaggaacagaaacacaattcatgtattctcaccactctgaatgcattcatg gaggaaaggaataaggccctagttgaatcagtctcaagtgagctggcagcatccaaatgtgatagtgagcctgggatggg tgaggacgatcaagctgaatgtgaaagccttgaggagcacaccccaggcttgcaggagattcagacctgtcaccaccact accaccactctgccagaacccaggcttcagcaattcaagtggaactccttaagtcacacccagtttgcatggaaggagac ctctgggaagatgattctgaggagaagagagatagtcctattgctcaacctctttatgagagtgaaatgaagagagaaga agagtgtgagcaccaagacctagagaagagggatggaatcagtcaaaatcaagatggctttgagaagttttctgaagatg aaagtaagagctccgcatttgctgttcctggagagaatgatgaacttcatgatgttcgggcgcctaccatagctcaactt ttacaggagaagacactctactctttctcggagtggcccaaggatcgagtgatcattaaccgtattgacaacatctgtca tgcaattttaaaaggaaagtggccttcttccagtcaatcttttgacataccatatatgatgtccactcctgccttagtca gcagtacttgcaataggagtggctatactgaaccagaagtctcagaatccagttttagcaatggagtgttagctacacag ctcccaaaggaaacttttctggctcccacctttgtcaaagatgaatcgaagcaccggcaatcatatgaatttgaaatgga gagagataccaagcaccggagtcttgatcagcttgtagcatcccactcccatacttcagctatattaaatggctggcggg atgcagtagatctctcaagagtgccagatggaacttcaggaagcagcactccattttccatgagcacaaatatacctaag ataggggcagtgaatgctctgcagggctcccttggcatggacttgtctggaatccttcaagcagggctaattcatcctgt cacgggacagattgtcaatggaagcttacgaagagatgatgctgctatcagaagacggcggggtaggagaaaaaatgtgg aagggattgacctgatacttttgaaggagagaaacctccaggcagggctgcccgaagatgaaggtcagaccataacaagt aattctaattcagatgggccagtcataactacctcaagtcaacagacagttcccgctactaatgtccagacagataagat tgttccaaataagagtcttctggattggctgagacagcagtctgattacactctcgaaatccctggctttggcacaaatt tttcagaaaagcctaaacagagaaggcagcgttgtaaagatcctagcaagttagacataaattctctcactggagaggaa cgggtgcctgtggtgcacaagggcacagggcggaggttagggggagccatggcgccagctttgaaggagttaccaaggtg gcttgatgcaaacatggaatatgctgttgcagcagactggtgtgacatagttaagctttcaggttttttacctgaaagca agtttaatcgtattctcactgaacccgtactcagagacgttggacctcgacgaagaggaagaaggccaagaagtgacctc tttaaagctccgggaataggagcagatgcttcgtctggaatgggaccattattcatgaatggacttatagctggaatgga tttagtaggacttcagagtatgagaaacatgcaaggcattcctttgactggactggttggctttcctgctggatttgcag cagtacctgctggtgaagatgttaaaagtactctgagcatgttgccaatgatgttaccagggatggctgctgtaccacag atgtttggtgttggaggacttcttaatccatcaataactactacttgtacttcaactgctccaacttcattagcaagcac aactaaaagtggtacaacgcattcagaaaatgaaactgaagacaaacaaaatacccaaggttcaaaaatagaaactgttt ctgaagacaaattgagtcctaattcattttctgatcagtcagaacctgcaataacaaccagtagtcctgtagcctttaac ccatttcttattcctggaatgtcatctggactgatatatccctcaatgtttctttctcctggtattggtatggccttgcc aggtcttcaacaaaccagactttcagaggcaacaaacctagaaagtcagaaaagaaaaaaaaagaaaactaaaggggaat tagcaaatgtggacccagaaatgctctcactgtctgacaaggaacatgctaacaagcaaaactgtacagaacaaatacca tatgtgtcaatggagcatgaacgtgatgtaccagcagaggaggaggaagaggagttaaaagaaattaaagatatcagtta gatttttttagtttttttttttctgaaaaaaaaaatattgtggcttgtttctcatcccataaatatttgttattgctctt tgtcc |
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Protein
| Protein ID | habu1_s3274_g11237.t1 |
|---|---|
| Definition | - |
>habu1_s3274_g11237.t1 MPWDAKLTELHSPRAILDSKSLQTPGQDFDCITSMIRVTMYNWESSMQKLWQRGDGSFQGQCIAPGKEVIYTPKLMIMKI QKKEKQLPNFKVLSHSPMSDASITFECKPQTPFDGSPDQEDLSDLVTISDLASVSLAHKDHQNVLSVEVPSEIVQNMITC HNGMQDDGGGGTGVKKKRKKKELGQQEMGNEREVKPKRKREPKEPKDPQKPKEPKKPKEPKQEGAKKPRKPREPKVPKES KEKKNILETSSKAKPKKSSMDQGPTPVEKKKKGKRKNDTSLDNLELDQGLLSLSGQNLDESVESVDSQKRRSGRQVKRRK YNEDLDFKVVDDDGETIAVLGAGRASALSASTLAWQAEEPPEDDANIIEKILASRMVQKEIYPGGATYEQEEFYVKYRNF SYLHCKWATMEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDSETGEEVTHYLVKWCSL PYEESTWELEEDVDPGKIKEFEFLQIPPEVKSLDRPASESWQKLEKSRDYKNNNQLREYQLEGMNWLLFNWYNRKNCILA DEMGLGKTIQSITFLSEIYLMGLRGPFLIIAPLSTITNWEREFRTWTELNAIVYHGSQISRQMIQQYEMVYRDMQGIPLP GLFKFQVVITTFEMILADCPELKKIHWRCVIIDEAHRLKNRNCKLLEGLKLMCLEHKVLLTGTPLQNSVEELFSLLNFLE PQQFPSETAFLEEFGDLKTEEQVKKLQSLLKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKG ANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHNSEAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIF SQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSNNGVQQLSKMEVEDLLRKGAYGALM DEEDEGSKFCEEDIDQILQRRTQTITIQTEGKGSTFSKASFVASGNRTDISLDDPNFWQKWAKIAELDTDAKDEKESLVI DRPRVRRQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLNEKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHL NEKDMEMICRALLVYCVRHYKGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPRGRKGKKTKNQMLLPEIKNADWLT TCNPEIILHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAADKAFEGTPAKDLDVLLPDIDYVEIPVDWWNADADKSL LIGVFKHGYERYNAMRADSALYFLEKVGMPDEKLLCAEQNVTDGVQDAPERGNTDKEESSADKLAGVDKQEEISDTCGPD PEKKDDNVAAQDGSDPDKFSWPVSSALTARLRRLVTIYQRCNRKELPSRPDVIGPCNHGYWLQEEMIRRANEMDPMNNEI QKRWTRREQADFYRTVSSFGVIYEPEKKVFDWTQFRSISRLEKKTDESLEKYFYNFVAMCKNVCRLPHWKDDGPTDPNIY VEPITEERAAKTLYRIELLRKVREQVLRCPQLHERLKLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDYYIMNDPQL SFLDAYRNYAQNKRTGVLGEEHLCCHHQANSKLYYSPLYNQVERKQALAEAEIDNCAKLMNSGNDLLQAENTSQDGSCEN FMSKVRSMISVNYDESSLPDSLSCIMYDEKACNSEHSSFARDSPSCTDISSNATKMAEGKTDGDEDLSSCDAETIRESTY LDHLQFGSDQLESQNTGQELSEKETKPSESFAQETCNVLQHMENQYISPKAVPFERDGVESVLSIGVYSPSLHNFDIKVQ PEKRLMGLLQEKSLEEKLMQSQSHSEEEEEEEEEEEEEEDHLEAATDIVKDSREAKCSTQEEQKHNSCILTTLNAFMEER NKALVESVSSELAASKCDSEPGMGEDDQAECESLEEHTPGLQEIQTCHHHYHHSARTQASAIQVELLKSHPVCMEGDLWE DDSEEKRDSPIAQPLYESEMKREEECEHQDLEKRDGISQNQDGFEKFSEDESKSSAFAVPGENDELHDVRAPTIAQLLQE KTLYSFSEWPKDRVIINRIDNICHAILKGKWPSSSQSFDIPYMMSTPALVSSTCNRSGYTEPEVSESSFSNGVLATQLPK ETFLAPTFVKDESKHRQSYEFEMERDTKHRSLDQLVASHSHTSAILNGWRDAVDLSRVPDGTSGSSTPFSMSTNIPKIGA VNALQGSLGMDLSGILQAGLIHPVTGQIVNGSLRRDDAAIRRRRGRRKNVEGIDLILLKERNLQAGLPEDEGQTITSNSN SDGPVITTSSQQTVPATNVQTDKIVPNKSLLDWLRQQSDYTLEIPGFGTNFSEKPKQRRQRCKDPSKLDINSLTGEERVP VVHKGTGRRLGGAMAPALKELPRWLDANMEYAVAADWCDIVKLSGFLPESKFNRILTEPVLRDVGPRRRGRRPRSDLFKA PGIGADASSGMGPLFMNGLIAGMDLVGLQSMRNMQGIPLTGLVGFPAGFAAVPAGEDVKSTLSMLPMMLPGMAAVPQMFG VGGLLNPSITTTCTSTAPTSLASTTKSGTTHSENETEDKQNTQGSKIETVSEDKLSPNSFSDQSEPAITTSSPVAFNPFL IPGMSSGLIYPSMFLSPGIGMALPGLQQTRLSEATNLESQKRKKKKTKGELANVDPEMLSLSDKEHANKQNCTEQIPYVS MEHERDVPAEEEEEELKEIKDIS |
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