Gene
| Gene Model ID | habu1_s3274_g11238 |
|---|---|
| Locus | habu1_scaffold3274 : 523589 ... 557596 : + |
| To GenomeBrowser | habu1_scaffold3274:523589..557596 |
| Genes list of scaffold | habu1_scaffold3274 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinoblastoma-like protein 1 | GO:0000122 GO:0005634 GO:0005667 GO:0008134 GO:0043550 GO:0051726 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3274_g11238.t2 | 1 | 1 | DUF3452 | 2 | 133 | 1.19951e-42 | 144.5 | 0.0 | 1.19951e-42 | 144.5 |
| habu1_s3274_g11238.t2 | 1 | 1 | RB_A | 303 | 496 | 0.0 | 255.9 | 0.0 | 0.0 | 255.9 |
| habu1_s3274_g11238.t2 | 1 | 1 | RB_B | 625 | 705 | 2.4e-15 | 56.2 | 6.4e-19 | 2.4e-15 | 56.2 |
| habu1_s3274_g11238.t2 | 1 | 1 | Rb_C | 721 | 809 | 8.1e-06 | 25.5 | 4.6e-09 | 1.7e-05 | 24.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3274_g11238.t2 | gi|514739782|ref|XP_005018117.1| | PREDICTED: retinoblastoma-like protein 1 [Anas platyrhynchos] | 0.0 |
| habu1_s3274_g11238.t2 | gi|697040553|ref|XP_009582862.1| | PREDICTED: retinoblastoma-like protein 1 [Fulmarus glacialis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.3 |
| Venom grand-1 | 0.3 |
| Pit, infrared sensing | 1.0 |
| Nose | 0.9 |
| Brain-1 | 1.7 |
| Eye | 0.7 |
| fetal fibroblast | 6.2 |
| venom gland-2 | 0.8 |
| Brain-2 | 1.2 |
| Spleen | 1.1 |
| Lung | 0.5 |
| Liver | 0.2 |
| Kidney | 0.5 |
| Pancreas | 0.8 |
| Small intestine | 0.7 |
| Large intestine | 0.4 |
| Stomach | 0.6 |
| heart | 0.7 |
| ovary | 7.1 |
| cheek muscle | 1.7 |
Transcript
| Transcript ID | habu1_s3274_g11238.t1 |
|---|---|
| Definition | - |
>habu1_s3274_g11238.t1 gggcgtcaccttggccattacaggttgagggttttggcgcgctcggcagaaagcattgtgggtaggggcagcgcctgtgg ctgcgggaacggttgctatcatgtctcaggaagaagaggaggctgccgctgtgcagtcccctgtccgggccgccctcgac catttgtgtcaggaactcaacctggacgttgacagcgcttcggaagcccttcgggatttcacagccttgcgaggcactta cagccttgagggagacattatacattggttggcttgtgctctctatgttgcttgccgtagaagtatagtgcctactgtag gaagtagtttgatgaaaggaaattgtgtctcattgaccagaattctgcgttcagcaaagttaagcttaatacagtttttt agtaaaatgaaaaaatggatggacatgtcaaacctgtgtcaagaatttcgagagagagtagagaagttggagagaaactt tgaagtggccacagtaatattcaaaaaatatactccaatctttttagatatatttaaaaatccttatgaagaacaaccta agtttcaaaggagcaggaaacaaagacgggttccctgtagtgctaaagatctattcaacttctgctggactctgtttgtc aacgcaaagggtaatttcagtatgattggagatgatctagtgaactcatatcatttacttttatgctgcttggatatgat ttttgcaaatgcacttttgtgtccatataaaaaagatttaataaatccatctttcaaaggtttgccagaagactttcata caactgactccaaagcttctgaaagggcaccatgcattatttctacactgtgtgaattacatgatggacttttgttagat gccaaaggcatcaaggaacattactttaaaccatatatttcaaagctctatgatagggagattttaaaaggagattgtct tttggatccaagcaactttgtaaataacaacaaggccctgaataaagaatatgaagaatatgttctcacaaaaggtgatt ttgatgaaagggttttcttgggaacagatgcagaagaagaaattggaacacctcaaaaatgttgtgcagctacaccaggt gggaatataagagctcatgttgaatgtcatcttcaacagcattttgagaaaagatcttttgcaccgtcaacccctttaac tggtaggagttatctaaaagagaaggaatcagtaattactccagttgcttctgcaacacagagtgtgagccggttacaaa gtattgtaacagggttgaaaaatgcaccaagtgaacagcttgtagctatttttgaatcatgtatacggaatcctatggag aatatcctgaaaggagtgaaaaagataggtgaaattttctgtcagaattatactctatcagtcagtgatcaactggtatg ccatttagattttgctcttcaccgattaaaattggcagaaattttgtattataaaagcttggaaacaataataatacaag aaaagcgaaggctgcctggcaaagacatgtctaccattttagaacaagatattttccattgctctttgcttgcatgctgt tttgaaatagtgctgtttgcatatcgttcaccaagaacttttccctggatcattgatattcttaatgtcaagccattcta tttctataaggtgattgaagtattgatccgttcagaagaaggtctctcaagagatatggtaaaacatcttaacagcattg aggaacagatacttgaaaatctagcctggagagaagactctgtactttgggatgcccttcaagtctcagaagatgaggtt cctcgctgtgaagaagtaatatttccaaataattttgaaacaggaaatggaggaaaaggatttggatatcttcccatgat gccagcatctcctatcatgcatcccagagtaaaagaggttcggacaaatcatgagggcaatcatagacgagatttgcagc tattgtctccaatctccattcatgaccgttacaattctcctatggcaggaagtgcgaaaagaaggctttttggagatgaa agccctcccacaaaatctgtagaaaaaagatatgctgaaggaataaaactgaaaacagacaagcatatgtctgtttcacc tgatgaaattgctctaagtatggcacaaactacagtaacaagacagaaagtgtccaaagaagaaagaacttttcaggaca taatgaaatgttatagaaatcagccacaagctaatagctatgtatatagaagtgtcttactgaaaaaagtacaagctgat gtaatagatgtaaaacatgaaagtatatcaaatgaaggtgtctgtgggaacgattatagagatttggaaaaagaagagag aggggatcttataaagttttacaacactatttatgttaaaaaagtgataaactttgtattgaaatatgtttccaaccatg attatatggtggaagcacctccgctttcccccttccccagcattaaacagctaccagtatctcctcggcgaatttctcag caacattctctttatgtttcaccacacaagaatggttcttgcctgacacctaagagtgcattgttatataaatttaatgg gagcccttctaagagtttgaaggaaattaacaatatgattaaacaagaaggacagagacctaagaagagagcaatatcaa ttgatagtgacacagaatcaccagctaagagactttgtcaggagaatgatgatgttttgcttaaacgtcttcaagatgtt gtcagtgaaagagcaaaccattaaatcagcaaagatgctgtgagcatcaaagctttcttgtgactcaattttctgtcctt cctaacgtttttatgttttgtagctagacggttatcaatcaatgtattagaattttaggatgctccattatagaaacaaa atttatagcagttatgaatttatgtcattattatgaaggttttgattagatctatatttagtaatgcattttaatgtaac aaaggttattggaattatgtgaaagtaggagcttgtaagaaaatcttgattttaacatggctttctcaacatttacaatg cctattatttcctggcatagtaatttgggtttatggttcacttcaaaatattttggtattattgtttaaaagaatattag gatctctgcattattttaatacaaaataagataaaatacagttagtcattaatacagtaaaatacggtgtttagaataga gatatttctcctgtttgataaatgctttgaataagctgttctgt |
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| Transcript ID | habu1_s3274_g11238.t2 |
| Definition | - |
>habu1_s3274_g11238.t2 gcttcaagtggccgttcccgaggaggcttttattgctgccttttaaagcacttaacggtgacccagggaccttctactac ggccttatgggtggacgtcggaaaagatgaatgctcgccagaggtccatggaagtaagaacgatcactgatgtgtgtaaa tcttctgagatccatacaagagccatttaactcaatgcaataaaccacagataagccgggaaaggattttgatagaaagc ggaatgccaagaaaaaaaatgcagggagacattatacattggttggcttgtgctctctatgttgcttgccgtagaagtat agtgcctactgtaggaagtagtttgatgaaaggaaattgtgtctcattgaccagaattctgcgttcagcaaagttaagct taatacagttttttagtaaaatgaaaaaatggatggacatgtcaaacctgtgtcaagaatttcgagagagagtagagaag ttggagagaaactttgaagtggccacagtaatattcaaaaaatatactccaatctttttagatatatttaaaaatcctta tgaagaacaacctaagtttcaaaggagcaggaaacaaagacgggttccctgtagtgctaaagatctattcaacttctgct ggactctgtttgtcaacgcaaagggtaatttcagtatgattggagatgatctagtgaactcatatcatttacttttatgc tgcttggatatgatttttgcaaatgcacttttgtgtccatataaaaaagatttaataaatccatctttcaaaggtttgcc agaagactttcatacaactgactccaaagcttctgaaagggcaccatgcattatttctacactgtgtgaattacatgatg gacttttgttagatgccaaaggcatcaaggaacattactttaaaccatatatttcaaagctctatgatagggagatttta aaaggagattgtcttttggatccaagcaactttgtaaataacaacaaggccctgaataaagaatatgaagaatatgttct cacaaaaggtgattttgatgaaagggttttcttgggaacagatgcagaagaagaaattggaacacctcaaaaatgttgtg cagctacaccaggtgggaatataagagctcatgttgaatgtcatcttcaacagcattttgagaaaagatcttttgcaccg tcaacccctttaactggtaggagttatctaaaagagaaggaatcagtaattactccagttgcttctgcaacacagagtgt gagccggttacaaagtattgtaacagggttgaaaaatgcaccaagtgaacagcttgtagctatttttgaatcatgtatac ggaatcctatggagaatatcctgaaaggagtgaaaaagataggtgaaattttctgtcagaattatactctatcagtcagt gatcaactggtatgccatttagattttgctcttcaccgattaaaattggcagaaattttgtattataaaagcttggaaac aataataatacaagaaaagcgaaggctgcctggcaaagacatgtctaccattttagaacaagatattttccattgctctt tgcttgcatgctgttttgaaatagtgctgtttgcatatcgttcaccaagaacttttccctggatcattgatattcttaat gtcaagccattctatttctataaggtgattgaagtattgatccgttcagaagaaggtctctcaagagatatggtaaaaca tcttaacagcattgaggaacagatacttgaaaatctagcctggagagaagactctgtactttgggatgcccttcaagtct cagaagatgaggttcctcgctgtgaagaagtaatatttccaaataattttgaaacaggaaatggaggaaaaggatttgga tatcttcccatgatgccagcatctcctatcatgcatcccagagtaaaagaggttcggacaaatcatgagggcaatcatag acgagatttgcagctattgtctccaatctccattcatgaccgttacaattctcctatggcaggaagtgcgaaaagaaggc tttttggagatgaaagccctcccacaaaatctgtagaaaaaagatatgctgaaggaataaaactgaaaacagacaagcat atgtctgtttcacctgatgaaattgctctaagtatggcacaaactacagtaacaagacagaaagtgtccaaagaagaaag aacttttcaggacataatgaaatgttatagaaatcagccacaagctaatagctatgtatatagaagtgtcttactgaaaa aagtacaagctgatgtaatagatgtaaaacatgaaagtatatcaaatgaaggtgtctgtgggaacgattatagagatttg gaaaaagaagagagaggggatcttataaagttttacaacactatttatgttaaaaaagtgataaactttgtattgaaata tgtttccaaccatgattatatggtggaagcacctccgctttcccccttccccagcattaaacagctaccagtatctcctc ggcgaatttctcagcaacattctctttatgtttcaccacacaagaatggttcttgcctgacacctaagagtgcattgtta tataaatttaatgggagcccttctaagagtttgaaggaaattaacaatatgattaaacaagaaggacagagacctaagaa gagagcaatatcaattgatagtgacacagaatcaccagctaagagactttgtcaggagaatgatgatgttttgcttaaac gtcttcaagatgttgtcagtgaaagagcaaaccattaaatcagcaaagatgctgtgagcatcaaagctttcttgtgactc aattttctgtccttcctaacgtttttatgttttgtagctagacggttatcaatcaatgtattagaattttaggatgctcc attatagaaacaaaatttatagcagttatgaatttatgtcattattatgaaggttttgattagatctatatttagtaatg cattttaatgtaacaaaggttattggaattatgtgaaagtaggagcttgtaagaaaatcttgattttaacatggctttct caacatttacaatgcctattatttcctggcatagtaatttgggtttatggttcacttcaaaatattttggtattattgtt taaaagaatattaggatctctgcattattttaatacaaaataagataaaatacagttagtcattaatacagtaaaatacg gtgtttagaatagagatatttctcctgtttgataaatgctttgaataagctgttctgt |
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Protein
| Protein ID | habu1_s3274_g11238.t1 |
|---|---|
| Definition | - |
>habu1_s3274_g11238.t1 MSQEEEEAAAVQSPVRAALDHLCQELNLDVDSASEALRDFTALRGTYSLEGDIIHWLACALYVACRRSIVPTVGSSLMKG NCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLCQEFRERVEKLERNFEVATVIFKKYTPIFLDIFKNPYEEQPKFQRSRK QRRVPCSAKDLFNFCWTLFVNAKGNFSMIGDDLVNSYHLLLCCLDMIFANALLCPYKKDLINPSFKGLPEDFHTTDSKAS ERAPCIISTLCELHDGLLLDAKGIKEHYFKPYISKLYDREILKGDCLLDPSNFVNNNKALNKEYEEYVLTKGDFDERVFL GTDAEEEIGTPQKCCAATPGGNIRAHVECHLQQHFEKRSFAPSTPLTGRSYLKEKESVITPVASATQSVSRLQSIVTGLK NAPSEQLVAIFESCIRNPMENILKGVKKIGEIFCQNYTLSVSDQLVCHLDFALHRLKLAEILYYKSLETIIIQEKRRLPG KDMSTILEQDIFHCSLLACCFEIVLFAYRSPRTFPWIIDILNVKPFYFYKVIEVLIRSEEGLSRDMVKHLNSIEEQILEN LAWREDSVLWDALQVSEDEVPRCEEVIFPNNFETGNGGKGFGYLPMMPASPIMHPRVKEVRTNHEGNHRRDLQLLSPISI HDRYNSPMAGSAKRRLFGDESPPTKSVEKRYAEGIKLKTDKHMSVSPDEIALSMAQTTVTRQKVSKEERTFQDIMKCYRN QPQANSYVYRSVLLKKVQADVIDVKHESISNEGVCGNDYRDLEKEERGDLIKFYNTIYVKKVINFVLKYVSNHDYMVEAP PLSPFPSIKQLPVSPRRISQQHSLYVSPHKNGSCLTPKSALLYKFNGSPSKSLKEINNMIKQEGQRPKKRAISIDSDTES PAKRLCQENDDVLLKRLQDVVSERANH |
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| Protein ID | habu1_s3274_g11238.t2 |
| Definition | - |
>habu1_s3274_g11238.t2 MKGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLCQEFRERVEKLERNFEVATVIFKKYTPIFLDIFKNPYEEQPKFQR SRKQRRVPCSAKDLFNFCWTLFVNAKGNFSMIGDDLVNSYHLLLCCLDMIFANALLCPYKKDLINPSFKGLPEDFHTTDS KASERAPCIISTLCELHDGLLLDAKGIKEHYFKPYISKLYDREILKGDCLLDPSNFVNNNKALNKEYEEYVLTKGDFDER VFLGTDAEEEIGTPQKCCAATPGGNIRAHVECHLQQHFEKRSFAPSTPLTGRSYLKEKESVITPVASATQSVSRLQSIVT GLKNAPSEQLVAIFESCIRNPMENILKGVKKIGEIFCQNYTLSVSDQLVCHLDFALHRLKLAEILYYKSLETIIIQEKRR LPGKDMSTILEQDIFHCSLLACCFEIVLFAYRSPRTFPWIIDILNVKPFYFYKVIEVLIRSEEGLSRDMVKHLNSIEEQI LENLAWREDSVLWDALQVSEDEVPRCEEVIFPNNFETGNGGKGFGYLPMMPASPIMHPRVKEVRTNHEGNHRRDLQLLSP ISIHDRYNSPMAGSAKRRLFGDESPPTKSVEKRYAEGIKLKTDKHMSVSPDEIALSMAQTTVTRQKVSKEERTFQDIMKC YRNQPQANSYVYRSVLLKKVQADVIDVKHESISNEGVCGNDYRDLEKEERGDLIKFYNTIYVKKVINFVLKYVSNHDYMV EAPPLSPFPSIKQLPVSPRRISQQHSLYVSPHKNGSCLTPKSALLYKFNGSPSKSLKEINNMIKQEGQRPKKRAISIDSD TESPAKRLCQENDDVLLKRLQDVVSERANH |
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