Gene
| Gene Model ID | habu1_s3443_g11709 |
|---|---|
| Locus | habu1_scaffold3443 : 162626 ... 187304 : + |
| To GenomeBrowser | habu1_scaffold3443:162626..187304 |
| Genes list of scaffold | habu1_scaffold3443 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho gdp-dissociation inhibitor 1 | GO:0000166 GO:0001772 GO:0003676 GO:0005094 GO:0005737 GO:0007266 GO:0032880 GO:0050790 GO:0070062 GO:0071526 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3443_g11709.t1 | 1 | 1 | RRM_1 | 102 | 168 | 1.2e-11 | 44.0 | 9.1e-15 | 2.7e-11 | 42.9 |
| habu1_s3443_g11709.t1 | 1 | 1 | RRM_6 | 102 | 167 | 1.3e-10 | 41.1 | 8.9e-14 | 2.6e-10 | 40.1 |
| habu1_s3443_g11709.t1 | 1 | 1 | Rho_GDI | 195 | 395 | 0.0 | 309.6 | 0.0 | 0.0 | 309.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3443_g11709.t1 | gi|149723251|ref|XP_001488291.1| | PREDICTED: rho GDP-dissociation inhibitor 1 isoform 1 [Equus caballus] | 0.0 |
| habu1_s3443_g11709.t1 | gi|602642114|ref|XP_007427850.1| | PREDICTED: rho GDP-dissociation inhibitor 1 [Python bivittatus] | 0.0 |
| habu1_s3443_g11709.t1 | gi|701389016|ref|XP_009989364.1| | PREDICTED: rho GDP-dissociation inhibitor 1 isoform X1 [Tauraco erythrolophus] | 0.0 |
| habu1_s3443_g11709.t1 | gi|611993545|ref|XP_007482919.1| | PREDICTED: rho GDP-dissociation inhibitor 1 isoform X2 [Monodelphis domestica] | 0.0 |
| habu1_s3443_g11709.t1 | gi|558142045|ref|XP_006118705.1| | PREDICTED: rho GDP-dissociation inhibitor 1 isoform X1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 45.1 |
| Venom grand-1 | 47.2 |
| Pit, infrared sensing | 43.8 |
| Nose | 41.1 |
| Brain-1 | 20.7 |
| Eye | 31.6 |
| fetal fibroblast | 174.9 |
| venom gland-2 | 73.2 |
| Brain-2 | 24.8 |
| Spleen | 37.3 |
| Lung | 56.1 |
| Liver | 42.8 |
| Kidney | 39.5 |
| Pancreas | 26.3 |
| Small intestine | 35.7 |
| Large intestine | 60.7 |
| Stomach | 45.3 |
| heart | 34.8 |
| ovary | 102.0 |
| cheek muscle | 31.1 |
Transcript
| Transcript ID | habu1_s3443_g11709.t1 |
|---|---|
| Definition | - |
>habu1_s3443_g11709.t1 gaaccggagggagccgccatcatgggcgacaaaatggatatgtctttggacgacattatcaagctgaacaggagtcagcg aggcggaggtggccgagccggcggtggtcgaggccggggaagaggagctacaggtcgaggcggcggagctgggcgaggcg gagctgggcgcgcaggcggaggcggccccgtccggaacagagccgctctgtcccggggaggcggcaggaacaggcccgcg ccctatagccggccaaaacaactccctgaaaaatggcaacatgatttgttcgagagttgctttggtcctggtgctggcgt ggaaacgggtggaaagctccttgtctctaatctggattttggtgtttcagatgcagacatacaggagctttttgcagaat ttgggacactgaagaaagcagcagtacactatgatcgttctggacgtagtctaggtactgcagatgtccattttgagagg aaagctgatgctctgaaggctatgaagcaatacaattgcgttcccttggatggtatgacgtcccatgaacattcagctgg ttacatcacagatagatacacagaggagaccaatacagaggacatcgttgcagagatggctgagcaagagcctacccatg agcagctggcccagattgcagctgaaaatgaggaggatgagcactccatcaactacaagcccccggcccaaaagagcatc caggaaatccaggaactggacaaagatgatgaaagtctacgcaagtataaggaagccctactgggaaatgttgccattac tactgacccttctagtccaaatgtggtggtaacaaaactgactttgatttgtccaagtgctcctggccccttggagttgg atctgacaggtgatttggagggtttcaagaagcaggcatttgttctgaaggaaggtgtagagtaccggataaaaatctct tttcgggtaaagaaagagattgtttcagggctcaagtacattcaacacacatccaggaaaggagtaaaaattgacaagac tgactatatggttggaagctatgggccacgggctgaggaatatgagtttctaacccccctggaggaagcccctaagggca tgctggcccggggcacttacaacatccgatctaaatttacagatgacgataagacggaccacctttcgtgggagtggaac ctgactatcaagaaggaatggaaagattagccctttcaatgccaagtcccaagagttgttcagacagtggctacagtaga aacccctccctgtaccaaagtgctggcattggacaaccttcccttcccatttttagctcaccaggaagaccttttggctc aatgccttgtatgtatttcctcccaagaatcaataacaatgaccaaacctgccttgtgcctcccaagtggagaggcagaa gtgcttcttatccctctttggccttgagtaagaggtctgctgctgtcccatttcaatacatttcaggcaggtggtaaagg gg |
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Protein
| Protein ID | habu1_s3443_g11709.t1 |
|---|---|
| Definition | - |
>habu1_s3443_g11709.t1 MDMSLDDIIKLNRSQRGGGGRAGGGRGRGRGATGRGGGAGRGGAGRAGGGGPVRNRAALSRGGGRNRPAPYSRPKQLPEK WQHDLFESCFGPGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY NCVPLDGMTSHEHSAGYITDRYTEETNTEDIVAEMAEQEPTHEQLAQIAAENEEDEHSINYKPPAQKSIQEIQELDKDDE SLRKYKEALLGNVAITTDPSSPNVVVTKLTLICPSAPGPLELDLTGDLEGFKKQAFVLKEGVEYRIKISFRVKKEIVSGL KYIQHTSRKGVKIDKTDYMVGSYGPRAEEYEFLTPLEEAPKGMLARGTYNIRSKFTDDDKTDHLSWEWNLTIKKEWKD |
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