Gene
| Gene Model ID | habu1_s3443_g11714 |
|---|---|
| Locus | habu1_scaffold3443 : 363304 ... 368415 : - |
| To GenomeBrowser | habu1_scaffold3443:363304..368415 |
| Genes list of scaffold | habu1_scaffold3443 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0003735 GO:0005739 GO:0005840 GO:0006351 GO:0006412 GO:0042254 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3443_g11714.t1 | 1 | 1 | Ribosomal_L12 | 120 | 188 | 5.6e-21 | 74.3 | 3.0e-24 | 5.6e-21 | 74.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3443_g11714.t1 | gi|602644248|ref|XP_007428577.1| | PREDICTED: 39S ribosomal protein L12, mitochondrial, partial [Python bivittatus] | 0.0 |
| habu1_s3443_g11714.t1 | gi|637268436|ref|XP_008102808.1| | PREDICTED: 39S ribosomal protein L12, mitochondrial [Anolis carolinensis] | 0.0 |
| habu1_s3443_g11714.t1 | gi|432868148|ref|XP_004071435.1| | PREDICTED: 39S ribosomal protein L12, mitochondrial isoform X1 [Oryzias latipes] | 0.0 |
| habu1_s3443_g11714.t1 | gi|507681410|ref|XP_004639541.1| | PREDICTED: 39S ribosomal protein L12, mitochondrial [Octodon degus] | 0.0 |
| habu1_s3443_g11714.t1 | gi|586557848|ref|XP_006912221.1| | PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L12, mitochondrial [Pteropus alecto] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 16.7 |
| Venom grand-1 | 46.8 |
| Pit, infrared sensing | 23.6 |
| Nose | 17.6 |
| Brain-1 | 6.8 |
| Eye | 13.1 |
| fetal fibroblast | 43.2 |
| venom gland-2 | 36.1 |
| Brain-2 | 8.2 |
| Spleen | 16.7 |
| Lung | 13.1 |
| Liver | 35.0 |
| Kidney | 46.5 |
| Pancreas | 32.9 |
| Small intestine | 24.2 |
| Large intestine | 24.0 |
| Stomach | 38.5 |
| heart | 39.0 |
| ovary | 75.9 |
| cheek muscle | 29.0 |
Transcript
| Transcript ID | habu1_s3443_g11714.t1 |
|---|---|
| Definition | - |
>habu1_s3443_g11714.t1 ggtgtttccttcctgccgccttttggagccgccgctatggccatgtttcccgcggccggactcggtaccgctctccgact gttactgcggcagcatcgatcacaagcttgtgctatccggatgctgaagactacgtgttcaaagtgtagtgaagtcttgg caagtccccgtatggatgatgccccaaaagaatattcacccaagattcagcagctagttcaggacattgctaacctgact ctcctagagatttctgacctcaatgagttgctaaagaaaactctcaagatccaagatattggacttatgccaatggccgg gatgatgccagcaacacagtcggcagcaccagcagaagaagaagaagaagctgttgaaaaagtagaaaagatcaatttta cagtgcggttgactgggtttaaagctgaagacaaggtgaaagttatcaaggaattaaagaaccatgtggagaacataaac cttgtccaggcaaagaagttggtggaatctctccctcaagacatcaaagtaaatgttcgtaaagaagaagcagaaaagat taaatcagctctggaggcagctggaggcacagttgttgtggattaaagaatctgcctgtctgccaaaggacttaaaagca gagcgggggacggaccctctgtgtcagccatcccttaggactggtggtggagtactgtgcggttccaggaaagttgctct gccccatttttttctgctgtgcagtttcccacagtgatggctcagtgtgtaagaaatcttcagcacaccttgcagtctgc tatgtggttaaaaacctgtattcataacgaatatacatgatggataacacctgtaaaacatgtgtgatgatcctttcttg catgttattgttttttccatccagcaggtttctcaagattgtgtgggtatttggaccattgtctcttaacttgcagattt aatcatttgtgggagcagatgggtgggatctttgtagattttgggtcataatctaagattatctttccaataggaggtgt aagcaaaactgattctcttttaataaagaaggaaagcagcgtggaaatg |
|
Protein
| Protein ID | habu1_s3443_g11714.t1 |
|---|---|
| Definition | - |
>habu1_s3443_g11714.t1 MAMFPAAGLGTALRLLLRQHRSQACAIRMLKTTCSKCSEVLASPRMDDAPKEYSPKIQQLVQDIANLTLLEISDLNELLK KTLKIQDIGLMPMAGMMPATQSAAPAEEEEEAVEKVEKINFTVRLTGFKAEDKVKVIKELKNHVENINLVQAKKLVESLP QDIKVNVRKEEAEKIKSALEAAGGTVVVD |
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