Gene
| Gene Model ID | habu1_s3535_g11965 |
|---|---|
| Locus | habu1_scaffold3535 : 76706 ... 104890 : + |
| To GenomeBrowser | habu1_scaffold3535:76706..104890 |
| Genes list of scaffold | habu1_scaffold3535 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cysteine and glycine-rich protein 1 | GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3535_g11965.t1 | 2 | 1 | LIM | 10 | 65 | 4.5e-30 | 103.5 | 1.0e-16 | 3.8e-13 | 49.3 |
| habu1_s3535_g11965.t1 | 2 | 2 | LIM | 119 | 175 | 4.5e-30 | 103.5 | 3.3e-20 | 1.2e-16 | 60.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3535_g11965.t1 | gi|602628584|ref|XP_007421226.1| | PREDICTED: cysteine and glycine-rich protein 1 [Python bivittatus] | 0.0 |
| habu1_s3535_g11965.t1 | gi|530648221|ref|XP_005310685.1| | PREDICTED: cysteine and glycine-rich protein 1 [Chrysemys picta bellii] | 0.0 |
| habu1_s3535_g11965.t1 | gi|557328033|ref|XP_006036954.1| | PREDICTED: cysteine and glycine-rich protein 1 isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s3535_g11965.t1 | gi|327271684|ref|XP_003220617.1| | PREDICTED: cysteine and glycine-rich protein 1 [Anolis carolinensis] | 0.0 |
| habu1_s3535_g11965.t1 | gi|697449086|ref|XP_009665623.1| | PREDICTED: cysteine and glycine-rich protein 1 [Struthio camelus australis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 65.5 |
| Venom grand-1 | 82.2 |
| Pit, infrared sensing | 83.8 |
| Nose | 48.9 |
| Brain-1 | 47.0 |
| Eye | 57.8 |
| fetal fibroblast | 328.3 |
| venom gland-2 | 48.8 |
| Brain-2 | 59.4 |
| Spleen | 76.5 |
| Lung | 308.8 |
| Liver | 63.3 |
| Kidney | 121.1 |
| Pancreas | 40.6 |
| Small intestine | 171.7 |
| Large intestine | 478.5 |
| Stomach | 654.9 |
| heart | 29.6 |
| ovary | 61.9 |
| cheek muscle | 39.2 |
Transcript
| Transcript ID | habu1_s3535_g11965.t1 |
|---|---|
| Definition | - |
>habu1_s3535_g11965.t1 gagcgatccgtgtgaaaggagcgccgccaatctcttgctccttgcctgatttaggaaatccccatttgaaaacaggaggc gatttgcgcgccgctcgcaagttaacccacccagatgccaaactggggtggaggcaagaagtgtggcgtatgccagaaaa cagtgtattttgcagaggaggtacaatgtgaaggcaacagtttccacaaatcctgttttttgtgcatggtttgcaagaag aatctggatagcactacggtggctgtgcatggagaagagatctactgcaagtcatgctatgggaagaaatatggaccaaa aggctatggatatggacaaggagctgggactttaagcatggacaagggtgaagcattggggatcaaatctgaagaatctc atccccattacccaaccaacaatcctaatgcatccaggattgcccaaaaggtgggtggtgctgatggctgccctcgctgt ggacaggctgtctatgctgctgagaaggtggttggagctggaaagtcatggcacaaggcctgcttccgatgtgcaaaatg tggcaaaggcctggagtctacaactttggctgataaagatggagaaatctattgcaagggttgctatgccaagaactttg gacctaaaggctttggctttggccagggagcaggggcacttgtccattctcagtgaagaactagatcccagcagctttga agcatcctttccagcactgaatgcttcgccacagctcagtttattcaatccaatccttagcaagaataaggctatcttgc tagtttgtatgtattagtaatacagtaacaatctgctactcctttt |
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Protein
| Protein ID | habu1_s3535_g11965.t1 |
|---|---|
| Definition | - |
>habu1_s3535_g11965.t1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTL SMDKGEALGIKSEESHPHYPTNNPNASRIAQKVGGADGCPRCGQAVYAAEKVVGAGKSWHKACFRCAKCGKGLESTTLAD KDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSQ |
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