Gene
| Gene Model ID | habu1_s3535_g11970 |
|---|---|
| Locus | habu1_scaffold3535 : 254353 ... 290732 : - |
| To GenomeBrowser | habu1_scaffold3535:254353..290732 |
| Genes list of scaffold | habu1_scaffold3535 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| PREDICTED: plakophilin-1 [Python bivittatus] | GO:0005521 GO:0005634 GO:0005886 GO:0016337 GO:0030057 GO:0045110 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3535_g11970.t1 | 1 | 1 | HEAT_2 | 191 | 268 | 3.4e-07 | 30.4 | 1.0e-06 | 0.0026 | 18.0 |
| habu1_s3535_g11970.t1 | 3 | 1 | Arm | 221 | 257 | 8.3e-27 | 92.0 | 4.5e-12 | 1.1e-08 | 34.5 |
| habu1_s3535_g11970.t1 | 3 | 2 | Arm | 263 | 301 | 8.3e-27 | 92.0 | 1.2e-07 | 0.0003 | 20.5 |
| habu1_s3535_g11970.t1 | 3 | 3 | Arm | 462 | 498 | 8.3e-27 | 92.0 | 1.2e-06 | 0.0031 | 17.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3535_g11970.t1 | gi|602628571|ref|XP_007421220.1| | PREDICTED: plakophilin-1 [Python bivittatus] | 0.0 |
| habu1_s3535_g11970.t1 | gi|327271674|ref|XP_003220612.1| | PREDICTED: plakophilin-1 [Anolis carolinensis] | 0.0 |
| habu1_s3535_g11970.t1 | gi|700421834|ref|XP_009949186.1| | PREDICTED: plakophilin-1 [Leptosomus discolor] | 0.0 |
| habu1_s3535_g11970.t1 | gi|704162880|ref|XP_010144329.1| | PREDICTED: plakophilin-1 [Buceros rhinoceros silvestris] | 0.0 |
| habu1_s3535_g11970.t1 | gi|704513314|ref|XP_010081134.1| | PREDICTED: plakophilin-1 [Pterocles gutturalis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 48.3 |
| Venom grand-1 | 4.2 |
| Pit, infrared sensing | 32.4 |
| Nose | 13.6 |
| Brain-1 | 0.1 |
| Eye | 14.7 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 9.0 |
| Brain-2 | 0.0 |
| Spleen | 0.6 |
| Lung | 2.6 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 3.6 |
| Small intestine | 0.5 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.1 |
| cheek muscle | 2.1 |
Transcript
| Transcript ID | habu1_s3535_g11970.t1 |
|---|---|
| Definition | - |
>habu1_s3535_g11970.t1 gttccatatatgatggtctgtccgatggctataactatggaacagcccgtggtagctactatgccaaagcccacacagga acaaataactggggccatacgatgtataatggaactctcaaaagaaatgcagctgagaacaaacgctatagttcctacag ccaaatggacagttggggtaacaggcattataacaagatctgcagtcctacatatcctggcagtgactactgctttgtgc agaacatgaagagtagtcggagtgagccagacctctacaatgaccctccacgaggcacactaaggaggaatcagagtgga agccgagtgagtcacaaggccagtctaaatcgtcacagcctctacagcaatacatgcaacaaccaggaaggaattacaac cctcacaagatcaaataagagaattccaatccgtaccccttcttgcgcttttgctaacaagcaagatgcagtctatgccc agcctgttgccagcaagcctgatgcaatctacggacaagatcactccaaaatatgtcatgatgaagtggattatggagca atgaccatccagaaagccattcaactcctgtgttcctcagatgagaagaaccaggccatgggtgcttactacctccagca cacctgttttcaagatgaatctgccaagcaagaggtttaccgacttggaggcgttgccaagttgattgaacttctgcgca gttcagatgagaacgtgcagcaggcttcagctggggcccttcgaaacttagtattcagaaatccaactaacaaattagaa acccggaggcagaatggaattcgagagtgtgtgaatctcctgaggaggactgggaacactgaaatacaaaagcagttgac aggattgctctggaacctgtcctctactgatgaactgaaagaagatttgatacacgatgcacttccagttctgactgatt gtgttattgtacctttttctgggtggagtgatggtattagcaatagtcgatcaaaagaaattgttgacccagaagttttc ttcaatgccactggctgtttaaggaacttgagttctgcagatgctggacgtcaaaccatgagaaactatccaggattgat tgactctgtgatgacttatacccagaattgtgtggcagctaaccagccagatgataagtctgtggagaactgtatctgta tccttcataatttgtcctaccgcctggatgctgaagtgccgaataaatacacccatcttaaccacttggccagaaacact cacacggacaaaagcttgacaggctgcttcaacaacagaggaaagctagagtatgatgaatataatctgccacttcctga agaggactataaacctaaaggttccagctggctgtatcattctgatgccatccgcacctacctgtctttaatggaaaaaa gcagaaaagatgctaccctggaggcatgtgctggagctctccaaaatctaactgcaagcagaggaatgatgtcaaatgca atgagccaactaatcgccttaaaagagaaagggctgccccgcatagcacggctcctgcaatccagtaatgctgaagttgt ccgatctggaacatctttactgagcaacatgtcccgacattctattctccacaaaaccatggctcaccaggtgcttccag atgtgactcgccttctagccctccaggctccaggatctagcaactatggagacatcatgacatcagcttgctatgccctg aggaacttaatcatgtacaacccacatatggccaagccctacttgactggcagtttgataaataatgtagtaggcctgtg ccgaaatggatcttatcccaaagcatctgaagcagctcgaatgctgctatctgatatttggtcaaatagggaactccaat ctgtactaaaacagcaaggatatgacaagaacatgatgggatccttaacaggaagcactttaaggactctgtcttccaga ttctaggagactttgcctgtttggattgcagagcatgtgactggttcctgtctggagtcttcagtcttcaaggaattagt taggatgttaaaagacttacagtattttgaaagttcaactaagttgtaaaattagggatgaaaattgtattgtctgatat aagtatcttaaaatgttttaatgaatattttaaatatatttttctcttttgttaaactgggaggctggttgttaatgtta tgtaaaagccaacttaccaaaaattgggatttatagttttgaatgacatacataacaacttaggcatctacttccctaac caatatcaagtcaatatattaggaaatgctaaggaaataatgcctaactgcagcttaatttgttaaaaaagcatgatttt tttctatgtgtgtacatttttagctatcattttggtagacaggctactcctaattttggatctctagatattgttggata accattctcatcatccaaaatcaataaagatgctttgaatgatggggggc |
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Protein
| Protein ID | habu1_s3535_g11970.t1 |
|---|---|
| Definition | - |
>habu1_s3535_g11970.t1 SIYDGLSDGYNYGTARGSYYAKAHTGTNNWGHTMYNGTLKRNAAENKRYSSYSQMDSWGNRHYNKICSPTYPGSDYCFVQ NMKSSRSEPDLYNDPPRGTLRRNQSGSRVSHKASLNRHSLYSNTCNNQEGITTLTRSNKRIPIRTPSCAFANKQDAVYAQ PVASKPDAIYGQDHSKICHDEVDYGAMTIQKAIQLLCSSDEKNQAMGAYYLQHTCFQDESAKQEVYRLGGVAKLIELLRS SDENVQQASAGALRNLVFRNPTNKLETRRQNGIRECVNLLRRTGNTEIQKQLTGLLWNLSSTDELKEDLIHDALPVLTDC VIVPFSGWSDGISNSRSKEIVDPEVFFNATGCLRNLSSADAGRQTMRNYPGLIDSVMTYTQNCVAANQPDDKSVENCICI LHNLSYRLDAEVPNKYTHLNHLARNTHTDKSLTGCFNNRGKLEYDEYNLPLPEEDYKPKGSSWLYHSDAIRTYLSLMEKS RKDATLEACAGALQNLTASRGMMSNAMSQLIALKEKGLPRIARLLQSSNAEVVRSGTSLLSNMSRHSILHKTMAHQVLPD VTRLLALQAPGSSNYGDIMTSACYALRNLIMYNPHMAKPYLTGSLINNVVGLCRNGSYPKASEAARMLLSDIWSNRELQS VLKQQGYDKNMMGSLTGSTLRTLSSRF |
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