Gene
| Gene Model ID | habu1_s3537_g11988 |
|---|---|
| Locus | habu1_scaffold3537 : 254436 ... 261213 : + |
| To GenomeBrowser | habu1_scaffold3537:254436..261213 |
| Genes list of scaffold | habu1_scaffold3537 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pre-mrna-splicing factor spf27 | GO:0005662 GO:0005681 GO:0006397 GO:0030054 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3537_g11988.t1 | 1 | 1 | BCAS2 | 10 | 220 | 0.0 | 265.2 | 0.0 | 0.0 | 264.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3537_g11988.t1 | gi|602647001|ref|XP_007429930.1| | PREDICTED: pre-mRNA-splicing factor SPF27 [Python bivittatus] | 0.0 |
| habu1_s3537_g11988.t1 | gi|637296495|ref|XP_003220516.2| | PREDICTED: pre-mRNA-splicing factor SPF27 [Anolis carolinensis] | 0.0 |
| habu1_s3537_g11988.t1 | gi|532117352|ref|XP_005342861.1| | PREDICTED: pre-mRNA-splicing factor SPF27-like [Ictidomys tridecemlineatus] | 0.0 |
| habu1_s3537_g11988.t1 | gi|530606556|ref|XP_005294976.1| | PREDICTED: pre-mRNA-splicing factor SPF27 [Chrysemys picta bellii] | 0.0 |
| habu1_s3537_g11988.t1 | gi|543373963|ref|XP_005530197.1| | PREDICTED: pre-mRNA-splicing factor SPF27 [Pseudopodoces humilis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 18.9 |
| Venom grand-1 | 40.9 |
| Pit, infrared sensing | 23.6 |
| Nose | 29.7 |
| Brain-1 | 11.1 |
| Eye | 24.7 |
| fetal fibroblast | 54.8 |
| venom gland-2 | 39.9 |
| Brain-2 | 11.5 |
| Spleen | 19.3 |
| Lung | 14.7 |
| Liver | 36.4 |
| Kidney | 29.2 |
| Pancreas | 50.9 |
| Small intestine | 12.9 |
| Large intestine | 12.8 |
| Stomach | 22.7 |
| heart | 25.9 |
| ovary | 81.8 |
| cheek muscle | 27.4 |
Transcript
| Transcript ID | habu1_s3537_g11988.t1 |
|---|---|
| Definition | - |
>habu1_s3537_g11988.t1 gggtctccaaccttggcaactttaagacttcaactcccagaatccttcagtcagccatgctgagggcggtaaaatttagg cggaggagcataggctgaagtgtacatccgcgcaggcgctgtaagaggaggagaggcctaagtggggctttgtcgcgggg caactgagaagcgggaagggctcgtgcgcggtccaggatggccggcccaggcttagtggcgggcgaagtcgctgtagacg cgctgccctacttcgaccaaggctatgaagcgccaggcgtccgggaagcggccgccgcgctggtggaggaggagacgcgg cgttacagacccaccaagaactacctgagctacctgcttacgccggactacagcgctttcgagactgaaataatgagaaa tgagtttgaacgcctagcagctcgacagcccatagaattactgagcatgaaaagatatgagctgcctgcaccctcctctg ggcagaagaatgatattacagcatggcaggaatgtgttaataactcgatggctcaactggaacaccaagcagttcgaatt gaaaatttggagttgatgtctcaatatggctgcaatgcctggaaagtatataatgagcatttagtccacatgattgaaca ggcacagaaagagctgcaaagtttaaggaaacacatccaagaccttaactggcagcggaagaacatgcaactcacagctg gtgctaaacttcgtgaaatggaatctacatgggtgtcccttgtcagtaaaaattatgagattgaacgaactattgtgcag ttggaaaatgaaatttctcaaattaagcagcaacatggagaggcaaataaagaaaacatccagcaagacttctgagtctt gctttagtctattgttgctcaaatcaacattgcctgaagcttgtgcataagtgaagatgttgatttctctatgtatataa tgatacagaagccatcatctgtgttaatagtttcatggattttagtttaataaattgattgcaaagtccaaacttc |
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Protein
| Protein ID | habu1_s3537_g11988.t1 |
|---|---|
| Definition | - |
>habu1_s3537_g11988.t1 MAGPGLVAGEVAVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLLTPDYSAFETEIMRNEFERLAARQPIE LLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQYGCNAWKVYNEHLVHMIEQAQKELQSLRKHI QDLNWQRKNMQLTAGAKLREMESTWVSLVSKNYEIERTIVQLENEISQIKQQHGEANKENIQQDF |
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