Gene
| Gene Model ID | habu1_s3695_g12428 |
|---|---|
| Locus | habu1_scaffold3695 : 441935 ... 454607 : - |
| To GenomeBrowser | habu1_scaffold3695:441935..454607 |
| Genes list of scaffold | habu1_scaffold3695 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| caspase-3 isoform x1 | EC:3.4.23.0 GO:0001782 GO:0001836 GO:0004190 GO:0004861 GO:0005634 GO:0005829 GO:0006508 GO:0006974 GO:0007050 GO:0007507 GO:0007605 GO:0008625 GO:0008631 GO:0009411 GO:0009611 GO:0016485 GO:0030216 GO:0030218 GO:0030889 GO:0034349 GO:0043029 GO:0043066 GO:0043525 GO:0045165 GO:0045736 GO:0046007 GO:0071310 GO:0097192 GO:0097200 GO:1902510 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3695_g12428.t1 | 1 | 1 | Peptidase_C14 | 52 | 280 | 0.0 | 161.1 | 0.0 | 0.0 | 160.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3695_g12428.t1 | gi|602631728|ref|XP_007422761.1| | PREDICTED: caspase-3 [Python bivittatus] | 0.0 |
| habu1_s3695_g12428.t1 | gi|530575294|ref|XP_005282030.1| | PREDICTED: caspase-3 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s3695_g12428.t1 | gi|558186840|ref|XP_006128558.1| | PREDICTED: caspase-3 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s3695_g12428.t1 | gi|558186844|ref|XP_006128559.1| | PREDICTED: caspase-3 isoform X2 [Pelodiscus sinensis] | 0.0 |
| habu1_s3695_g12428.t1 | gi|591359090|ref|XP_007054526.1| | PREDICTED: caspase-3 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.8 |
| Venom grand-1 | 3.2 |
| Pit, infrared sensing | 5.9 |
| Nose | 8.4 |
| Brain-1 | 5.0 |
| Eye | 2.3 |
| fetal fibroblast | 23.8 |
| venom gland-2 | 7.1 |
| Brain-2 | 5.2 |
| Spleen | 4.7 |
| Lung | 8.4 |
| Liver | 1.3 |
| Kidney | 3.1 |
| Pancreas | 2.2 |
| Small intestine | 4.9 |
| Large intestine | 4.8 |
| Stomach | 8.2 |
| heart | 6.7 |
| ovary | 142.6 |
| cheek muscle | 6.7 |
Transcript
| Transcript ID | habu1_s3695_g12428.t1 |
|---|---|
| Definition | - |
>habu1_s3695_g12428.t1 gcaagagagtaaaaccgtaggagcgaaggaggagtcaccagagactttctcacctacataagcctcggaaattaagaagt ggccgagcagctgctggcaagttgcataaaataactatggcagacgaaaaccatgtcctgaaatcaccacaaagtgtaac agatgcaaagactttatctggttctgaagggaaaagcattccttttagcaaatctgttgattctgtgatacaagcagatg aaagttatagaatggactgtccagaaatggggatatgcattctagtcaacaataaacatttccttccagatactggaatg acacttcgatctggtacagatgcagacgcagcacttgttttagacactttcagaacattgggatataatgtgaaaactta taatgatctttcatgtaaacaaattattgatgtgttgcaaaacattgccaaggacgatcatagaaagagaaatagttttg tttgtgtcttgctaagccatggggaggatggattgatttatggcacggatggccctctagaactgaaaatgttaaccaac ctcttcagaggagacaggtgtaagaccctgcgagggaagccaaagctcttttttatccaggcttgtagaggaacagatct tgattctggagttgaaacagacagcggctcagatgaaagaatgtgtcagaaaatacctgtagaggcagacttcctatatg cttattctactgcaccgggctactattcatggaggaattccttagaaggttcctggtttatacagtcattgtgtgtgatg ttgaaacaatatgctaagaaacttgaacttatgcagatcctaacacgtgtaaatcgcaaagttgcagaattcagttccta ttcaaacagacctgactttcatggaaagaagcagatcccgtgtattgtgtctatgctaacaaaagatttttattttccat tctgaagagttctttatcttctgatacagaagctaaaagaagggatatggcagaatttgttttattctgagctatgctta tttcctggtgccctggtggcattaagatttataaaggtaactatttcagtcagtagaacagtagtacagaattttgcaga tttagtgatagagaaattatgatttagaaaatgaaaaacatccatttgacttggaataattttcaataaaaattatgaaa gattcagtaactgttggttgacaaaataatttgcagataaaaagtaataaaatgtaccattttcagaataaatggttaat tttggtgacaatgt |
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Protein
| Protein ID | habu1_s3695_g12428.t1 |
|---|---|
| Definition | - |
>habu1_s3695_g12428.t1 MADENHVLKSPQSVTDAKTLSGSEGKSIPFSKSVDSVIQADESYRMDCPEMGICILVNNKHFLPDTGMTLRSGTDADAAL VLDTFRTLGYNVKTYNDLSCKQIIDVLQNIAKDDHRKRNSFVCVLLSHGEDGLIYGTDGPLELKMLTNLFRGDRCKTLRG KPKLFFIQACRGTDLDSGVETDSGSDERMCQKIPVEADFLYAYSTAPGYYSWRNSLEGSWFIQSLCVMLKQYAKKLELMQ ILTRVNRKVAEFSSYSNRPDFHGKKQIPCIVSMLTKDFYFPF |
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