Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s3695_g12430
Locus habu1_scaffold3695 : 478941 ... 503697 : -
To GenomeBrowser habu1_scaffold3695:478941..503697
Genes list of scaffold habu1_scaffold3695

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s3695_g12430.t1 1 1 CENP-U 80 236 3.9e-10 39.9 8.0e-14 3.9e-10 39.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s3695_g12430.t1 gi|602631762|ref|XP_007422778.1| PREDICTED: centromere protein U [Python bivittatus] 0.0
habu1_s3695_g12430.t1 gi|719755441|ref|XP_010214493.1| PREDICTED: centromere protein U [Tinamus guttatus] 0.0
habu1_s3695_g12430.t1 gi|637306648|ref|XP_008110023.1| PREDICTED: centromere protein U [Anolis carolinensis] 0.0
habu1_s3695_g12430.t1 gi|698396504|ref|XP_009693492.1| PREDICTED: centromere protein U [Cariama cristata] 0.0
habu1_s3695_g12430.t1 gi|690459875|ref|XP_009328949.1| PREDICTED: centromere protein U [Pygoscelis adeliae] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 9.3
Venom grand-1 3.3
Pit, infrared sensing 10.9
Nose 8.4
Brain-1 0.8
Eye 5.0
fetal fibroblast 48.0
venom gland-2 2.8
Brain-2 0.6
Spleen 2.9
Lung 1.6
Liver 1.0
Kidney 5.2
Pancreas 3.5
Small intestine 1.9
Large intestine 2.7
Stomach 5.8
heart 3.3
ovary 130.8
cheek muscle 2.6

Transcript
Transcript IDhabu1_s3695_g12430.t1
Definition-
>habu1_s3695_g12430.t1
gggcgggaggcctcccggctgcggcagtagcgtttcggcgtaggaagctccgacctgttaacaagatgccaaagagaaaa
gcaaccaaagtttccaaaaaggaattggcaggatatcaaaccaagccagactctcagggtaaactgttttcatctgagga
gcctgatgtctcaagtattttgaaaattcctggaaccggacaaacagaggaaactgaagacttatttgatcatcctttac
atagcactcctctatctgtgtacgaggaggaagaagaggctaataatgggaacgatcaatattcaacactgaatgagtct
gccagcaatttctctgatccagagtccccaaagaaaaatgcaaagaaaagaaaaactcgcgttctgaaaacaatggtgag
aactgaagattcagaagaggaatcttcagtaaagaacacgataccccaaaaaaagactcgatcccatgtaaataagaatg
ttttaccagaaggggagacacattgtccagtttcaaaaacagttccaaagcagccaacgaaagttaccagatatgttacc
aaggaaaaagttgttttgagggagcttgaaaagataacaacagaattcaaaaaagaagtgaaacaggagaagtatacaaa
agtaattgataaatttcataccaggctcaaagatgaactcaccgacatttctgcagatgctgagaaactgaaaaatacaa
aattgaaacaagcaaagatggtcagaaagacaaataagaaaagaaaacgtttaatagaaattaaaggagacctatttaga
aatgaattagaactgaagaaactaaagaaagaatacagcaaactgcaagaaaaaatgtcctgtctcacgaatgcagttca
gtttattaaagatttaaagagtcttcagcaaatgaagaatgaaaaggaaaactcacaagaaaaactagtatatggcattt
ccagtcttcctgcacttctgatggagtcacgaagaattttaggagcagaaagtcacttacaaaatatcaacacaaaatta
cagaaaagtttggaattgcaaaaaactaagtattcatactaaaaattatattctgtattatcagatgtacaatgtattaa
aatataaagtagaagttgaagtaggaaaactataaataattggagtttttttccagtgatctaaactccataaattcctt
ttggcatgcttactggtatatttagatatgattaactcaaaaataaaaatcttttgtttggcaaagaagaaataatgagg
caacaaaacagaccattgaatcataaatatagaatttaaatagatttactttgtgtgagaacaagtgatctttaacctat
tctttcataaaagtagactttccaacagagaaataatcttgctattatttagttgcagtaatgtttcatctggcaaggca
tatgtagctgcatgttgagtacatatatgctgctttccaagaaagaagatggttgttgaaaaattaaaacttagagcgta
tgcttctagttgtcagctctgaatatatcacattactatttatgtatttgcattactatttacatatttggcaattcaat
aaaatccttttctgaaatcctaaaa

Protein
Protein IDhabu1_s3695_g12430.t1
Definition-
>habu1_s3695_g12430.t1
MPKRKATKVSKKELAGYQTKPDSQGKLFSSEEPDVSSILKIPGTGQTEETEDLFDHPLHSTPLSVYEEEEEANNGNDQYS
TLNESASNFSDPESPKKNAKKRKTRVLKTMVRTEDSEEESSVKNTIPQKKTRSHVNKNVLPEGETHCPVSKTVPKQPTKV
TRYVTKEKVVLRELEKITTEFKKEVKQEKYTKVIDKFHTRLKDELTDISADAEKLKNTKLKQAKMVRKTNKKRKRLIEIK
GDLFRNELELKKLKKEYSKLQEKMSCLTNAVQFIKDLKSLQQMKNEKENSQEKLVYGISSLPALLMESRRILGAESHLQN
INTKLQKSLELQKTKYSY

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