Gene
| Gene Model ID | habu1_s3695_g12442 |
|---|---|
| Locus | habu1_scaffold3695 : 805722 ... 836437 : - |
| To GenomeBrowser | habu1_scaffold3695:805722..836437 |
| Genes list of scaffold | habu1_scaffold3695 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pdz and lim domain protein 3 isoform x2 | GO:0005737 GO:0007015 GO:0007507 GO:0008092 GO:0008270 GO:0008307 GO:0015629 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3695_g12442.t3 | 1 | 1 | PDZ | 10 | 81 | 3.6e-17 | 62.3 | 1.6e-20 | 8.0e-17 | 61.2 |
| habu1_s3695_g12442.t3 | 1 | 1 | LIM | 318 | 368 | 1.8e-13 | 50.3 | 6.7e-17 | 3.3e-13 | 49.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3695_g12442.t3 | gi|524994766|ref|XP_005045194.1| | PREDICTED: PDZ and LIM domain protein 3 isoform X1 [Ficedula albicollis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 29.6 |
| Venom grand-1 | 33.4 |
| Pit, infrared sensing | 29.7 |
| Nose | 26.7 |
| Brain-1 | 3.4 |
| Eye | 11.5 |
| fetal fibroblast | 140.3 |
| venom gland-2 | 19.1 |
| Brain-2 | 3.2 |
| Spleen | 19.6 |
| Lung | 102.9 |
| Liver | 26.2 |
| Kidney | 10.1 |
| Pancreas | 10.4 |
| Small intestine | 32.5 |
| Large intestine | 59.0 |
| Stomach | 45.5 |
| heart | 33.6 |
| ovary | 44.8 |
| cheek muscle | 437.3 |
Transcript
| Transcript ID | habu1_s3695_g12442.t1 |
|---|---|
| Definition | - |
>habu1_s3695_g12442.t1 aagcgtaacagtgaaaccgcccttaggagcggagctgaagtccgcggagcagaggttcccccagagtagccataaacatg ccacaaaacgtgcttcttcccggacctccgccttggggcttcaggctgtcgggaggaatcgattttaaccagccgttaat tataacccggataacaccaggaagtaaagcttcacaagcgaatctgtgtcctggtgacatcattatagctattgatggtc acagcacagaaaacatgactcacaatgatgcccaggagaaaattaaagcagcagtccagcaactctgtctgaaaattgag agggcagagactaaattgtggtctccacaagtagcagaagagggcagaccgcatccattcaaaataaacttggaagctga accacaggaattgaagcctattggtacaactcataacagaaaggccaagccttttgttgcagcagctaaccttgatgaca aaaggcaggtaatgagttctgcctataattctccaattgggctttattcatctggcaatatacacgatgctcttcatgga cagctgcgtggcctgatccctagttcagctgaaaatgagccagcaccagctgcagtgcctcagtctgatgtttataggat gctacatgatgatcctcaaggacccagccaaccacggcagtccagttcttttaaagtgctccaagacatggtctctgaag aatctgaaggtcgtcccagtgggacaaggagtgtaagagcacccatgacaaagacagatgctggtgcaggaagtgtgcca aaagtgcctttgtgtgacaagtgtggaaatggcattgttggcacagtagtaaaagcccgtgacaagtacaggcacccaga atgtttcatctgttccgactgcaatctcaacctgaagcagaaaggttacttctttgtggaggggcagctatactgtgaaa ctcacgccagggctcgcatgaggcccccagagggttatgaagctgtcaccgtttaccccaaggcttaactgtttggagag acacatgcctgcatgcacgcccagggcattctcagcttacagcagctctagggctaatggcctaaatccagcaaactgct ctttgctagggggaggggaaaggaggataggatggagggctcagggaaaaggattggggtttttagtagaccattctggg tctggaataggggataggcttttccaagactttatcacaatgtctgccagcgtaatctgacaggagtaaacataacagat tgtactacatta |
|
| Transcript ID | habu1_s3695_g12442.t2 |
| Definition | - |
>habu1_s3695_g12442.t2 aagcgtaacagtgaaaccgcccttaggagcggagctgaagtccgcggagcagaggttcccccagagtagccataaacatg ccacaaaacgtgcttcttcccggacctccgccttggggcttcaggctgtcgggaggaatcgattttaaccagccgttaat tataacccggataacaccaggaagtaaagcttcacaagcgaatctgtgtcctggtgacatcattatagctattgatggtc acagcacagaaaacatgactcacaatgatgcccaggagaaaattaaagcagcagtccagcaactctgtctgaaaattgag agggcagagactaaattgtggtctccacaagtagcagaagagggcagaccgcatccattcaaaataaacttggaagctga accacaggatataagctactttgaacacaaacataatgttcgacctaaacctttcgtaatccaaagcccaagcagtactc cctccggttttgatggcagcagtggacgtagcactccctcttccattagcactgttagcactatctgtcctactgagttg aaagctgcagctaagatggcccccaacattcccttagaaatggagcttcctggtgtcaagattgtgcacgctcagtttaa cactcctatgcagatatattcagatgacaatattatggaaacactgcaggggcaggttgctacagcactcggggaaacac cccatataagtgagccagcaccagctgcagtgcctcagtctgatgtttataggatgctacatgatgatcctcaaggaccc agccaaccacggcagtccagttcttttaaagtgctccaagacatggtctctgaagaatctgaaggtcgtcccagtgggac aaggagtgtaagagcacccatgacaaagacagatgctggtgcaggaagtgtgccaaaagtgcctttgtgtgacaagtgtg gaaatggcattgttggcacagtagtaaaagcccgtgacaagtacaggcacccagaatgtttcatctgttccgactgcaat ctcaacctgaagcagaaaggttacttctttgtggaggggcagctatactgtgaaactcacgccagggctcgcatgaggcc cccagagggttatgaagctgtcaccgtttaccccaaggcttaactgtttggagagacacatgcctgcatgcacgcccagg gcattctcagcttacagcagctctagggctaatggcctaaatccagcaaactgctctttgctagggggaggggaaaggag gataggatggagggctcagggaaaaggattggggtttttagtagaccattctgggtctggaataggggataggcttttcc aagactttatcacaatgtctgccagcgtaatctgacaggagtaaacataacagattgtactacatta |
|
| Transcript ID | habu1_s3695_g12442.t3 |
| Definition | - |
>habu1_s3695_g12442.t3 aagcgtaacagtgaaaccgcccttaggagcggagctgaagtccgcggagcagaggttcccccagagtagccataaacatg ccacaaaacgtgcttcttcccggacctccgccttggggcttcaggctgtcgggaggaatcgattttaaccagccgttaat tataacccggataacaccaggaagtaaagcttcacaagcgaatctgtgtcctggtgacatcattatagctattgatggtc acagcacagaaaacatgactcacaatgatgcccaggagaaaattaaagcagcagtccagcaactctgtctgaaaattgag agggcagagactaaattgtggtctccacaagtagcagaagagggcagaccgcatccattcaaaataaacttggaagctga accacaggaattgaagcctattggtacaactcataacagaaaggccaagccttttgttgcagcagctaaccttgatgaca aaaggcaggatataagctactttgaacacaaacataatgttcgacctaaacctttcgtaatccaaagcccaagcagtact ccctccggttttgatggcagcagtggacgtagcactccctcttccattagcactgttagcactatctgtcctactgagtt gaaagctgcagctaagatggcccccaacattcccttagaaatggagcttcctggtgtcaagattgtgcacgctcagttta acactcctatgcagatatattcagatgacaatattatggaaacactgcaggggcaggttgctacagcactcggggaaaca ccccatataagtgagccagcaccagctgcagtgcctcagtctgatgtttataggatgctacatgatgatcctcaaggacc cagccaaccacggcagtccagttcttttaaagtgctccaagacatggtctctgaagaatctgaaggtcgtcccagtggga caaggagtgtaagagcacccatgacaaagacagatgctggtgcaggaagtgtgccaaaagtgcctttgtgtgacaagtgt ggaaatggcattgttggcacagtagtaaaagcccgtgacaagtacaggcacccagaatgtttcatctgttccgactgcaa tctcaacctgaagcagaaaggttacttctttgtggaggggcagctatactgtgaaactcacgccagggctcgcatgaggc ccccagagggttatgaagctgtcaccgtttaccccaaggcttaactgtttggagagacacatgcctgcatgcacgcccag ggcattctcagcttacagcagctctagggctaatggcctaaatccagcaaactgctctttgctagggggaggggaaagga ggataggatggagggctcagggaaaaggattggggtttttagtagaccattctgggtctggaataggggataggcttttc caagactttatcacaatgtctgccagcgtaatctgacaggagtaaacataacagattgtactacatta |
|
Protein
| Protein ID | habu1_s3695_g12442.t1 |
|---|---|
| Definition | - |
>habu1_s3695_g12442.t1 MPQNVLLPGPPPWGFRLSGGIDFNQPLIITRITPGSKASQANLCPGDIIIAIDGHSTENMTHNDAQEKIKAAVQQLCLKI ERAETKLWSPQVAEEGRPHPFKINLEAEPQELKPIGTTHNRKAKPFVAAANLDDKRQVMSSAYNSPIGLYSSGNIHDALH GQLRGLIPSSAENEPAPAAVPQSDVYRMLHDDPQGPSQPRQSSSFKVLQDMVSEESEGRPSGTRSVRAPMTKTDAGAGSV PKVPLCDKCGNGIVGTVVKARDKYRHPECFICSDCNLNLKQKGYFFVEGQLYCETHARARMRPPEGYEAVTVYPKA |
|
| Protein ID | habu1_s3695_g12442.t2 |
| Definition | - |
>habu1_s3695_g12442.t2 MPQNVLLPGPPPWGFRLSGGIDFNQPLIITRITPGSKASQANLCPGDIIIAIDGHSTENMTHNDAQEKIKAAVQQLCLKI ERAETKLWSPQVAEEGRPHPFKINLEAEPQDISYFEHKHNVRPKPFVIQSPSSTPSGFDGSSGRSTPSSISTVSTICPTE LKAAAKMAPNIPLEMELPGVKIVHAQFNTPMQIYSDDNIMETLQGQVATALGETPHISEPAPAAVPQSDVYRMLHDDPQG PSQPRQSSSFKVLQDMVSEESEGRPSGTRSVRAPMTKTDAGAGSVPKVPLCDKCGNGIVGTVVKARDKYRHPECFICSDC NLNLKQKGYFFVEGQLYCETHARARMRPPEGYEAVTVYPKA |
|
| Protein ID | habu1_s3695_g12442.t3 |
| Definition | - |
>habu1_s3695_g12442.t3 MPQNVLLPGPPPWGFRLSGGIDFNQPLIITRITPGSKASQANLCPGDIIIAIDGHSTENMTHNDAQEKIKAAVQQLCLKI ERAETKLWSPQVAEEGRPHPFKINLEAEPQELKPIGTTHNRKAKPFVAAANLDDKRQDISYFEHKHNVRPKPFVIQSPSS TPSGFDGSSGRSTPSSISTVSTICPTELKAAAKMAPNIPLEMELPGVKIVHAQFNTPMQIYSDDNIMETLQGQVATALGE TPHISEPAPAAVPQSDVYRMLHDDPQGPSQPRQSSSFKVLQDMVSEESEGRPSGTRSVRAPMTKTDAGAGSVPKVPLCDK CGNGIVGTVVKARDKYRHPECFICSDCNLNLKQKGYFFVEGQLYCETHARARMRPPEGYEAVTVYPKA |
|