Gene
| Gene Model ID | habu1_s3726_g12526 |
|---|---|
| Locus | habu1_scaffold3726 : 197916 ... 210118 : + |
| To GenomeBrowser | habu1_scaffold3726:197916..210118 |
| Genes list of scaffold | habu1_scaffold3726 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna pseudouridine synthase-like 1 isoform x1 | EC:5.4.99.12 GO:0001522 GO:0003723 GO:0008033 GO:0009982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3726_g12526.t2 | 2 | 1 | PseudoU_synth_1 | 7 | 103 | 3.0e-26 | 91.8 | 8.5e-13 | 1.3e-08 | 35.2 |
| habu1_s3726_g12526.t2 | 2 | 2 | PseudoU_synth_1 | 152 | 265 | 3.0e-26 | 91.8 | 6.9e-19 | 1.0e-14 | 54.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3726_g12526.t2 | gi|530598917|ref|XP_005292960.1| | PREDICTED: tRNA pseudouridine synthase-like 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.5 |
| Venom grand-1 | 0.9 |
| Pit, infrared sensing | 1.1 |
| Nose | 0.9 |
| Brain-1 | 1.4 |
| Eye | 1.1 |
| fetal fibroblast | 2.1 |
| venom gland-2 | 1.0 |
| Brain-2 | 2.0 |
| Spleen | 1.4 |
| Lung | 0.7 |
| Liver | 0.3 |
| Kidney | 2.7 |
| Pancreas | 1.2 |
| Small intestine | 1.1 |
| Large intestine | 1.3 |
| Stomach | 1.3 |
| heart | 1.4 |
| ovary | 1.2 |
| cheek muscle | 2.2 |
Transcript
| Transcript ID | habu1_s3726_g12526.t1 |
|---|---|
| Definition | - |
>habu1_s3726_g12526.t1 atcgccaggcgcctagagcgtggaaaaagtcctggatcaggaggaaggcagcagccgggtggattgtcttgtttcattaa agaaccaattttaaagccccccctcccaaaaaaaaagacatttttagaggcgagccaatccctctggctttgcaaaacaa tattttgcttgagagagtcacttatgccaccattgggcatgctttttttccagtctggttgaaattgcaactttnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttaatattctttcaa tacttcggggccaaatatagcggtgtgaaggctctgccctccggcatgtcggctgttggtgtggaaaatcacctggagaa ggctgcagaaaatctcagaccatccgagcccatcaaatttgtcgtctccagccggacagacgctggggtgcatgccctct gcaacactgcccacctggatgtccagaggaaggaggggcagccccccttctccgaagacgtcctcgtccaggtgctcaac aagcatctcctttcagagcccatccgcgttctgagcgcttgtaaggtttctagcaacttccacgcccgcttcttggcccg agccaggacctacgtgtatcgggtggccacaggctgcacagcctattctgacctgccggtctttgaacgggatctctgct gggcaaactggcgtggccacctgaacctggccgccatgcaggaagcagccacgtttctgatgggcacccacgacttctcc accttctgctcggccagctcagagatgccggtgagaagccccatcaagagcctgaactgggtggaggtgaggcctgcccg gggcttcctttccgagcacagccaggacagcaacctgaagttttgggaactggaatttgtaagccggtctttcctgtaca aacaggtgcggcgaatggtgggggcgttggtagccgtgggtcagaaccggttacaaccgcatcacatcaaggaactccta gcggcccgggacttgatggcttatccccacaacaccatcgcgcccccagacggactcttcctcaagcatgtcgagtacta caaaagtgatttggagacagaagattgaaatggactataatttctgcctaggggtttattatatacattgctggagggag aaaaagtctcattttctcatgctctgcaggcattttgttaataaactggcttaatccgaagttcgac |
|
| Transcript ID | habu1_s3726_g12526.t2 |
| Definition | - |
>habu1_s3726_g12526.t2 atcgccaggcgcctagagcgtggaaaaagtcctggatcaggaggaaggcagcagccgggtggattgtcttgtttcattaa agaaccaattttaaagccccccctcccaaaaaaaaagacatttttagaggcgagccaatccctctggctttgcaaaacaa tattttgcttgagagagtcacttatgccaccattgggcatgctttttttccagtctggttgaaattgcaactttnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttaatattctttcaa tacttcggggccaaatatagcggtgtgaaggctctgccctccggcatgtcggctgttggtgtggaaaatcacctggagac aaccagactccatcaagcaaaatttgtctgcgatgccgctaaggctgcagaaaatctcagaccatccgagcccatcaaat ttgtcgtctccagccggacagacgctggggtgcatgccctctgcaacactgcccacctggatgtccagaggaaggagggg cagccccccttctccgaagacgtcctcgtccaggtgctcaacaagcatctcctttcagagcccatccgcgttctgagcgc ttgtaaggtttctagcaacttccacgcccgcttcttggcccgagccaggacctacgtgtatcgggtggccacaggctgca cagcctattctgacctgccggtctttgaacgggatctctgctgggcaaactggcgtggccacctgaacctggccgccatg caggaagcagccacgtttctgatgggcacccacgacttctccaccttctgctcggccagctcagagatgccggtgagaag ccccatcaagagcctgaactgggtggaggtgaggcctgcccggggcttcctttccgagcacagccaggacagcaacctga agttttgggaactggaatttgtaagccggtctttcctgtacaaacaggtgcggcgaatggtgggggcgttggtagccgtg ggtcagaaccggttacaaccgcatcacatcaaggaactcctagcggcccgggacttgatggcttatccccacaacaccat cgcgcccccagacggactcttcctcaagcatgtcgagtactacaaaagtgatttggagacagaagattgaaatggactat aatttctgcctaggggtttattatatacattgctggagggagaaaaagtctcattttctcatgctctgcaggcattttgt taataaactggcttaatccgaagttcgac |
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Protein
| Protein ID | habu1_s3726_g12526.t1 |
|---|---|
| Definition | - |
>habu1_s3726_g12526.t1 MSAVGVENHLEKAAENLRPSEPIKFVVSSRTDAGVHALCNTAHLDVQRKEGQPPFSEDVLVQVLNKHLLSEPIRVLSACK VSSNFHARFLARARTYVYRVATGCTAYSDLPVFERDLCWANWRGHLNLAAMQEAATFLMGTHDFSTFCSASSEMPVRSPI KSLNWVEVRPARGFLSEHSQDSNLKFWELEFVSRSFLYKQVRRMVGALVAVGQNRLQPHHIKELLAARDLMAYPHNTIAP PDGLFLKHVEYYKSDLETED |
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| Protein ID | habu1_s3726_g12526.t2 |
| Definition | - |
>habu1_s3726_g12526.t2 MSAVGVENHLETTRLHQAKFVCDAAKAAENLRPSEPIKFVVSSRTDAGVHALCNTAHLDVQRKEGQPPFSEDVLVQVLNK HLLSEPIRVLSACKVSSNFHARFLARARTYVYRVATGCTAYSDLPVFERDLCWANWRGHLNLAAMQEAATFLMGTHDFST FCSASSEMPVRSPIKSLNWVEVRPARGFLSEHSQDSNLKFWELEFVSRSFLYKQVRRMVGALVAVGQNRLQPHHIKELLA ARDLMAYPHNTIAPPDGLFLKHVEYYKSDLETED |
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