Gene
| Gene Model ID | habu1_s3726_g12533 |
|---|---|
| Locus | habu1_scaffold3726 : 307865 ... 322635 : - |
| To GenomeBrowser | habu1_scaffold3726:307865..322635 |
| Genes list of scaffold | habu1_scaffold3726 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cyclin-l2 isoform x1 | GO:0000079 GO:0005634 GO:0006355 GO:0006396 GO:0019901 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3726_g12533.t1 | 2 | 1 | Cyclin_N | 97 | 216 | 3.3e-15 | 55.7 | 1.8e-13 | 5.4e-10 | 38.9 |
| habu1_s3726_g12533.t1 | 2 | 2 | Cyclin_N | 237 | 290 | 3.3e-15 | 55.7 | 3.9e-06 | 0.012 | 15.2 |
| habu1_s3726_g12533.t1 | 1 | 1 | Cyclin_C | 240 | 310 | 6.4e-06 | 26.0 | 1.1e-08 | 3.2e-05 | 23.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3726_g12533.t1 | gi|602665861|ref|XP_007438512.1| | PREDICTED: cyclin-L1-like [Python bivittatus] | 0.0 |
| habu1_s3726_g12533.t1 | gi|327288054|ref|XP_003228743.1| | PREDICTED: cyclin-L2 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s3726_g12533.t1 | gi|564247966|ref|XP_006263076.1| | PREDICTED: cyclin-L1-like [Alligator mississippiensis] | 0.0 |
| habu1_s3726_g12533.t1 | gi|696969227|ref|XP_009555032.1| | PREDICTED: cyclin-L2 isoform X2 [Cuculus canorus] | 0.0 |
| habu1_s3726_g12533.t1 | gi|696969224|ref|XP_009555031.1| | PREDICTED: cyclin-L2 isoform X1 [Cuculus canorus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 17.5 |
| Venom grand-1 | 19.4 |
| Pit, infrared sensing | 16.1 |
| Nose | 22.8 |
| Brain-1 | 6.9 |
| Eye | 15.3 |
| fetal fibroblast | 9.2 |
| venom gland-2 | 28.4 |
| Brain-2 | 5.4 |
| Spleen | 14.5 |
| Lung | 19.8 |
| Liver | 18.9 |
| Kidney | 10.4 |
| Pancreas | 12.9 |
| Small intestine | 15.0 |
| Large intestine | 14.0 |
| Stomach | 11.6 |
| heart | 10.0 |
| ovary | 6.5 |
| cheek muscle | 5.8 |
Transcript
| Transcript ID | habu1_s3726_g12533.t1 |
|---|---|
| Definition | - |
>habu1_s3726_g12533.t1 acgtcgcggcctcggggcggggacagaagcctggcgcgggcaggaagccgggcgagaggaggccggaagtggagttgaat cagtccgagattgagcggaggtggcgacgtcgtccggacaagatggcggcgatgatggcgcccgcggcggccacagcggc cccggcgggcttcggactcggctcggcgaggatggccgccgcttcggccggcggctcgtcctcttcctcgtcgtcgtcgt cttctagcggcggcccggggcctctcccgccgcctcccgcgccgcctccgcccggggcgctccgcatcggcgaccggctc tactcgggggtgctgctcaccctggagaactgcctcctgccggaggagacgcttcgcttcacgccttccatgagcaacgg cctcgacgccgagaccgaggcgcagctccggatcacgggctgtgagctcgtccagtcggccgggatcctgctccggattc ctcaggtggccatggctacagggcaggtgctgttccagcgtttcttttatacaaaatcgtttgtgaagcattccatgcag catgtgtcaatggcctgtcttcatttggcttccaaaattgaagaagccccacggcgcataagagatgttattaatgtatt ccaccgacttcggttactgagagagaaaaagaaacctgtccctctaatactggatcaagaatacgttaacttgaagaacc aaatcatcaaggcagagaggagagttttgaaggaacttgggttttgcgtgcacgtgaagcatcctcacaagataatcgtt atgtaccttcaggtattagaatgtgaacgtaaccagcacctggtccagacctcatggaattacatgaacgacagcctgcg gacggatgtctttctgagataccaaccggagactattgcctgcgcctgtatttaccttgctgctcggactcttcagattc cgctcccaaatcgtcctcactggttccttctctttggggctatcgaggaggaaattcaggagatctgcctgaaaatttta aaactctacacagtgaagaaggttgacctggccgttctggagagccgcgttgagcagcggagactggccatggaagagga gaaagcccaggccaaaggcctcgtgccggatggaactccccatctggcagtgtcaggtttttctcccatccccaaaccag aatctccgaaagataccaaaggcagcattaagccttccccgttgctcgtgcaggtggtcaaaaatgcaaagcggaagacc gaagggatgaagcgattaaggtccaaaagtccaattaacggcgttcagaaagcgggccgcgagagcaggagtcgcagtag aagccgagagcagagctattcccgatccacttcgcactcgccttctccgaaaaagaggaaaagcgaaagctattccacct ccagctgctccaagtcgcacagccgttcgaggagccgcagcgattctcctccccaccagttcggccacaccgcctccagt taccaaagttccaagatgcgaagctacaagaaggacaagggatacaagtacgcctctcccaaagcccggcagtcccgcag ccgcagctcctcgagatcccgcagccgttcgcgggaacgggagcgccccgagcacacgggcaaatatcggaagaagagcc actactgcagggatcaaaggcccgagcggcatcacccctacgacaggccgagccatcgctacgagagagatccgcccggc cacagccgacaccggagatgaaaaagaactatggaatagtatttaaattccacgagttgaaagtgggtgtttgttttttt ttttaaaaaaaatcctggtgctggccgccagttcaaagctggggggtgatttcatagagcttaaccttttatgtggttta ggtaataaaaatttactcaggatcttttcaa |
|
Protein
| Protein ID | habu1_s3726_g12533.t1 |
|---|---|
| Definition | - |
>habu1_s3726_g12533.t1 MAAMMAPAAATAAPAGFGLGSARMAAASAGGSSSSSSSSSSSGGPGPLPPPPAPPPPGALRIGDRLYSGVLLTLENCLLP EETLRFTPSMSNGLDAETEAQLRITGCELVQSAGILLRIPQVAMATGQVLFQRFFYTKSFVKHSMQHVSMACLHLASKIE EAPRRIRDVINVFHRLRLLREKKKPVPLILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHL VQTSWNYMNDSLRTDVFLRYQPETIACACIYLAARTLQIPLPNRPHWFLLFGAIEEEIQEICLKILKLYTVKKVDLAVLE SRVEQRRLAMEEEKAQAKGLVPDGTPHLAVSGFSPIPKPESPKDTKGSIKPSPLLVQVVKNAKRKTEGMKRLRSKSPING VQKAGRESRSRSRSREQSYSRSTSHSPSPKKRKSESYSTSSCSKSHSRSRSRSDSPPHQFGHTASSYQSSKMRSYKKDKG YKYASPKARQSRSRSSSRSRSRSRERERPEHTGKYRKKSHYCRDQRPERHHPYDRPSHRYERDPPGHSRHRR |
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