Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s3726_g12534
Locus habu1_scaffold3726 : 324931 ... 332315 : -
To GenomeBrowser habu1_scaffold3726:324931..332315
Genes list of scaffold habu1_scaffold3726

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s3726_g12534.t1 6 1 Ank_4 37 89 7.00649e-45 150.6 1.3e-13 3.3e-10 40.1
habu1_s3726_g12534.t1 4 1 Ank_2 40 128 0.0 201.0 1.0e-23 2.5e-20 72.6
habu1_s3726_g12534.t1 7 1 Ank 40 66 0.0 192.3 1.1e-08 2.7e-05 23.7
habu1_s3726_g12534.t1 5 1 Ank_3 40 63 1.10002e-42 139.7 6.2e-06 0.015 15.4
habu1_s3726_g12534.t1 5 1 Ank_5 40 76 1.79997e-41 139.1 5.2e-10 1.3e-06 28.4
habu1_s3726_g12534.t1 7 2 Ank 70 94 0.0 192.3 1.8e-07 0.00044 19.9
habu1_s3726_g12534.t1 6 2 Ank_4 76 122 7.00649e-45 150.6 4.2e-09 1.0e-05 25.8
habu1_s3726_g12534.t1 5 2 Ank_5 88 138 1.79997e-41 139.1 9.2e-12 2.3e-08 34.0
habu1_s3726_g12534.t1 7 3 Ank 102 129 0.0 192.3 3.4e-11 8.4e-08 31.6
habu1_s3726_g12534.t1 6 3 Ank_4 102 147 7.00649e-45 150.6 6.3e-11 1.6e-07 31.6
habu1_s3726_g12534.t1 5 2 Ank_3 102 128 1.10002e-42 139.7 1.0e-08 2.5e-05 24.0
habu1_s3726_g12534.t1 5 3 Ank_5 128 175 1.79997e-41 139.1 7.2e-11 1.8e-07 31.1
habu1_s3726_g12534.t1 7 4 Ank 135 165 0.0 192.3 1.6e-12 4.0e-09 35.8
habu1_s3726_g12534.t1 6 4 Ank_4 135 183 7.00649e-45 150.6 1.5e-11 3.7e-08 33.6
habu1_s3726_g12534.t1 5 3 Ank_3 135 163 1.10002e-42 139.7 1.8e-09 4.4e-06 26.4
habu1_s3726_g12534.t1 4 2 Ank_2 136 197 0.0 201.0 1.3e-17 3.2e-14 53.0
habu1_s3726_g12534.t1 4 3 Ank_2 167 231 0.0 201.0 1.1e-15 2.8e-12 46.8
habu1_s3726_g12534.t1 7 5 Ank 167 198 0.0 192.3 5.2e-07 0.0013 18.4
habu1_s3726_g12534.t1 6 5 Ank_4 187 221 7.00649e-45 150.6 3.5e-08 8.7e-05 22.9
habu1_s3726_g12534.t1 5 4 Ank_5 187 241 1.79997e-41 139.1 4.7e-13 1.1e-09 38.1
habu1_s3726_g12534.t1 7 6 Ank 201 232 0.0 192.3 9.4e-12 2.3e-08 33.4
habu1_s3726_g12534.t1 5 4 Ank_3 201 228 1.10002e-42 139.7 7.9e-07 0.002 18.2
habu1_s3726_g12534.t1 4 4 Ank_2 205 280 0.0 201.0 1.0e-18 2.5e-15 56.5
habu1_s3726_g12534.t1 6 6 Ank_4 212 254 7.00649e-45 150.6 1.8e-11 4.4e-08 33.4
habu1_s3726_g12534.t1 5 5 Ank_5 220 274 1.79997e-41 139.1 1.9e-12 4.7e-09 36.2
habu1_s3726_g12534.t1 7 7 Ank 233 262 0.0 192.3 1.6e-09 4.1e-06 26.3
habu1_s3726_g12534.t1 5 5 Ank_3 233 259 1.10002e-42 139.7 1.3e-07 0.00031 20.6
habu1_s3726_g12534.t1 1 1 Ribosomal_L20 281 382 6.6e-33 112.8 4.4e-36 1.1e-32 112.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s3726_g12534.t1 gi|602646993|ref|XP_007429926.1| PREDICTED: ankyrin repeat domain-containing protein 65 [Python bivittatus] 0.0
habu1_s3726_g12534.t1 gi|637363464|ref|XP_008120675.1| PREDICTED: ankyrin repeat domain-containing protein 65 [Anolis carolinensis] 0.0
habu1_s3726_g12534.t1 gi|641759390|ref|XP_005293092.2| PREDICTED: ankyrin repeat domain-containing protein 65 [Chrysemys picta bellii] 0.0
habu1_s3726_g12534.t1 gi|558169759|ref|XP_006124773.1| PREDICTED: ankyrin repeat domain-containing protein 65 [Pelodiscus sinensis] 0.0
habu1_s3726_g12534.t1 gi|591351702|ref|XP_007070301.1| PREDICTED: ankyrin repeat domain-containing protein 65 [Chelonia mydas] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 4.0
Venom grand-1 10.4
Pit, infrared sensing 5.1
Nose 3.9
Brain-1 1.7
Eye 3.1
fetal fibroblast 11.8
venom gland-2 12.2
Brain-2 2.0
Spleen 5.4
Lung 6.5
Liver 14.7
Kidney 10.8
Pancreas 13.6
Small intestine 6.6
Large intestine 4.5
Stomach 10.2
heart 5.6
ovary 12.0
cheek muscle 8.1

Transcript
Transcript IDhabu1_s3726_g12534.t1
Definition-
>habu1_s3726_g12534.t1
accaaaagtcagcagcagaggagaaaaaaatgactgcggcaaaaacccaggccgagctgatgagaaagtggatggtgctg
gcagaaaccatccccgagggaatcggaaaagaggaaggcttggagcctgccgcgagcgggactgaaaatggtttgctccc
gacagccaaggcaccaggatggagggagctccatcaggcagccaggaatggggacctgcggctggtaaagcagctactga
agcgaggggcatctacaaacagcagagacgaaaacagctggactctcctgcatgtcgcttccttgcacagctacctcccc
ttggtgaagtttctcatccagcgtggagccgtgatccgtaccgacaccaaggccggctacacacctctgcaccatgctgc
ctggagcggccatacccaagtggcggatctcctcctggcccggggggcgccagtgatggactccaccaaagagggcctta
ccccgtttcattgtgcggccgccaacggccacaccttgatgatgcaactgcttctacagcacgggacagaccccaacgct
tgcgactgtaaccagtggaccgccctgcactgggccacagctggccaccagcttcacataatgaatgggctgatttccca
aggggtgaaccccaatctccaaggcaagggaggtgtcacacctctacacatcgctgccgagattgggagacccgaaacga
cacatctgttgcttgtccaaggggccgacgtgaatctccaagacgactgcggaaggacggcgctctctgtcgcttctaaa
aacagccatcctgagatcgtgaagctgctgctccagaaccaagcggatcgaagcttagcagacctctgcggttgcacccc
gctccacaaggccgcaggcgccggccgggtgaccgaccgcttctggcgcaagcagcagattctcaagcatgccctgcatt
tccgtggacggaagaaccgttgttatagcttggcataccgagctgttcggagggcctttgtgtacgccaccaaggccaga
ttgctcaaaaagagagagatgaggacgctttgggaaaccaggatcgaagcagcaacgttggaacatggtattaagtacca
taatttcataagtggcctttataagtgtcaggtagaactgaaccggaaatcgctggctgagctggccatttatgaaccaa
agacattcaaatctttagctgctttggcgaaaagaagaggggaagaaggactgcttgcagcccagggcgaagaaaaggag
cctgaaggaatattttcccgcctactgaaatatccatgaagggaacgcgctcccaaggagctttgctcaaattaaaaaaa
ggacattttagaaataaaaatattgatattttttttctct

Protein
Protein IDhabu1_s3726_g12534.t1
Definition-
>habu1_s3726_g12534.t1
MVLAETIPEGIGKEEGLEPAASGTENGLLPTAKAPGWRELHQAARNGDLRLVKQLLKRGASTNSRDENSWTLLHVASLHS
YLPLVKFLIQRGAVIRTDTKAGYTPLHHAAWSGHTQVADLLLARGAPVMDSTKEGLTPFHCAAANGHTLMMQLLLQHGTD
PNACDCNQWTALHWATAGHQLHIMNGLISQGVNPNLQGKGGVTPLHIAAEIGRPETTHLLLVQGADVNLQDDCGRTALSV
ASKNSHPEIVKLLLQNQADRSLADLCGCTPLHKAAGAGRVTDRFWRKQQILKHALHFRGRKNRCYSLAYRAVRRAFVYAT
KARLLKKREMRTLWETRIEAATLEHGIKYHNFISGLYKCQVELNRKSLAELAIYEPKTFKSLAALAKRRGEEGLLAAQGE
EKEPEGIFSRLLKYP

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