Gene
| Gene Model ID | habu1_s3890_g12902 |
|---|---|
| Locus | habu1_scaffold3890 : 195796 ... 222650 : + |
| To GenomeBrowser | habu1_scaffold3890:195796..222650 |
| Genes list of scaffold | habu1_scaffold3890 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sorting nexin- partial | GO:0005737 GO:0035091 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3890_g12902.t1 | 1 | 1 | PX | 111 | 222 | 2.1e-23 | 82.2 | 1.1e-26 | 4.2e-23 | 81.3 |
| habu1_s3890_g12902.t1 | 2 | 1 | Vps5 | 243 | 403 | 4.1e-11 | 42.5 | 1.5e-09 | 5.5e-06 | 25.8 |
| habu1_s3890_g12902.t1 | 1 | 1 | BAR | 308 | 445 | 1.9e-07 | 30.8 | 1.1e-10 | 4.3e-07 | 29.6 |
| habu1_s3890_g12902.t1 | 2 | 2 | Vps5 | 399 | 444 | 4.1e-11 | 42.5 | 5.4e-07 | 0.002 | 17.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3890_g12902.t1 | gi|602635490|ref|XP_007424611.1| | PREDICTED: sorting nexin-30-like [Python bivittatus] | 0.0 |
| habu1_s3890_g12902.t1 | gi|327263709|ref|XP_003216660.1| | PREDICTED: sorting nexin-30 [Anolis carolinensis] | 0.0 |
| habu1_s3890_g12902.t1 | gi|729759111|ref|XP_010576451.1| | PREDICTED: sorting nexin-30 [Haliaeetus leucocephalus] | 0.0 |
| habu1_s3890_g12902.t1 | gi|543745373|ref|XP_005513483.1| | PREDICTED: sorting nexin-30 [Columba livia] | 0.0 |
| habu1_s3890_g12902.t1 | gi|686601536|ref|XP_009277053.1| | PREDICTED: sorting nexin-30, partial [Aptenodytes forsteri] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.2 |
| Venom grand-1 | 15.4 |
| Pit, infrared sensing | 10.2 |
| Nose | 7.2 |
| Brain-1 | 5.8 |
| Eye | 7.9 |
| fetal fibroblast | 9.2 |
| venom gland-2 | 22.1 |
| Brain-2 | 4.4 |
| Spleen | 56.5 |
| Lung | 15.9 |
| Liver | 112.6 |
| Kidney | 52.4 |
| Pancreas | 225.4 |
| Small intestine | 21.9 |
| Large intestine | 10.9 |
| Stomach | 45.2 |
| heart | 7.3 |
| ovary | 109.9 |
| cheek muscle | 7.8 |
Transcript
| Transcript ID | habu1_s3890_g12902.t1 |
|---|---|
| Definition | - |
>habu1_s3890_g12902.t1 agcagctgcggcagcttcccctccgcctatggccgcccgctctcagccgagggcggagtctccccgggtgaaattgctct gggtgccgccgccgccgccgccgctacgttgtatcttccgcgacttcgctcagcaagacatcccgcacccgctggccgtc gcctccagcagcgaggagctcagcgtggaactgacgcccagcccggatttgcaactgcctcgcagcatcgccgacaagga tctcagtttgcccaatggtactcctgtagatacttctagtccagcctcttcctcctcgcttcttaatagactacagctgg atgatgacttggacggggagatgagggacctctttgtcactgttgatgatcccaaaaagcatgtctgtacgatggagact tacatcacttaccgcgtcacaactaagactactcgagctgagtttgacttgccagagtattcaatgcgccgaagatacca ggattttgattggctcaggaataaactggaggaatctcagccaactcatctcattcctcctcttccagaaaaatttgtag tcaaaggcgttgttgaccgtttttcagaagaatttgttgagacgaggagaaaggccttggataaattcttaaaaagaatt gcggaccatccagtactttctttcaatgaacattttcatgtatttcttacagccaaagatcttaatgcttacaaaaaaca aggaatggctttgcttactaagatgggagaatcggtaaaatatgtcacaggaagctacaaattaagaagtcgaccgttgg agtttgctgccatgggtgactatctagacacgttttctctgaagctaggaactattgatagaatagcacagcggataatc aaagaggaagtggaatatttagtggaactacgagaatatggtcctgtttattcaacctggagtgcactagaaacagaggt gtctgaacctcttgaaggagtatcagcctgcattggaaactgttgcacagcccttgaggaattgagcgaagatatgactg aagactttctgcctgttttacgagaatatatcctatattcagattccatgaagaatgtgttgaagaaaagagatcaagtt caagcagaatatgaagccaaactagaagctgtggtcctcaagagagaagaccgtcccaaggtgcccacagatgttgaaaa gtgtcaagaccgggtagagtgctttaatgccgacctgaaggctgacatggacagatggcagaacaacaagcggcaagatt ttaggcagctgctgatgggaatggcagataaaaacatccaatattacgagaagtgccttacggcgtgggagtctattata ccactgttgcaagataagactgagaccaaataagttgcagcttttttctgaatttcttccctgaaccacggacattgacc aaatgctcagaatcactaccactaattatagtgaagatttactatacatcttgatgattttttttttctcctggagaaac accaagtgtgctaattctgaactgtacattttttgccactttttaacgaaaccatcttgaacattcttactatgtgaact tctggatgatggaagttaaaacaagagcactttttctcttggaccactttatattaaatgaaattgatgaatggaacact aaaatcacaataaaaataaagactcttaaatgcaag |
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Protein
| Protein ID | habu1_s3890_g12902.t1 |
|---|---|
| Definition | - |
>habu1_s3890_g12902.t1 MAARSQPRAESPRVKLLWVPPPPPPLRCIFRDFAQQDIPHPLAVASSSEELSVELTPSPDLQLPRSIADKDLSLPNGTPV DTSSPASSSSLLNRLQLDDDLDGEMRDLFVTVDDPKKHVCTMETYITYRVTTKTTRAEFDLPEYSMRRRYQDFDWLRNKL EESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFHVFLTAKDLNAYKKQGMALLTKMG ESVKYVTGSYKLRSRPLEFAAMGDYLDTFSLKLGTIDRIAQRIIKEEVEYLVELREYGPVYSTWSALETEVSEPLEGVSA CIGNCCTALEELSEDMTEDFLPVLREYILYSDSMKNVLKKRDQVQAEYEAKLEAVVLKREDRPKVPTDVEKCQDRVECFN ADLKADMDRWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESIIPLLQDKTETK |
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