Gene
| Gene Model ID | habu1_s3892_g12906 |
|---|---|
| Locus | habu1_scaffold3892 : 7660 ... 31335 : - |
| To GenomeBrowser | habu1_scaffold3892:7660..31335 |
| Genes list of scaffold | habu1_scaffold3892 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| von willebrand factor type egf and pentraxin domain-containing protein 1- partial | GO:0000785 GO:0003682 GO:0005509 GO:0005576 GO:0005737 GO:0007155 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3892_g12906.t1 | 1 | 1 | VWA | 86 | 256 | 2.0e-34 | 118.8 | 1.2e-37 | 3.0e-34 | 118.3 |
| habu1_s3892_g12906.t1 | 1 | 1 | VWA_2 | 86 | 243 | 2.4e-11 | 44.0 | 1.2e-14 | 3.1e-11 | 43.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3892_g12906.t1 | gi|26330612|dbj|BAC29036.1| | unnamed protein product [Mus musculus] | 0.0 |
| habu1_s3892_g12906.t1 | gi|617660907|ref|XP_007537336.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like, partial [Erinaceus europaeus] | 0.0 |
| habu1_s3892_g12906.t1 | gi|640790167|ref|XP_008050938.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like, partial [Tarsius syrichta] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.1 |
| Brain-1 | 0.1 |
| Eye | 0.1 |
| fetal fibroblast | 1.4 |
| venom gland-2 | 0.2 |
| Brain-2 | 0.1 |
| Spleen | 0.3 |
| Lung | 1.1 |
| Liver | 0.0 |
| Kidney | 3.9 |
| Pancreas | 0.0 |
| Small intestine | 0.2 |
| Large intestine | 0.1 |
| Stomach | 0.1 |
| heart | 0.5 |
| ovary | 0.5 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s3892_g12906.t1 |
|---|---|
| Definition | - |
>habu1_s3892_g12906.t1 gccgggcgtgagaggaaggaacaaactcgagaaaaggacttaaatcgcgggcgggcggacggacgagcccggagggatgt ggctcgcgggcgtgtacttgtgggtcggcggggcgctggcttgggcgcccgtgcagccccgcagccagcctcgccccttc aacctgagctctctcgcggcgctctcggctccgttcaagccggcctcccacggcccgttgttgccggagccgccggtggc ggcgacgacgacggggaataaagtggagaaactcgggcgggctttcaagcggcaggtgaggcagctgcgggagaagagcg accgcttggagctggtcttcctggtggacgagtcgtcgagcgtgggccaggctaacttcctcagcgagctgcgcttcgtc aagaagctgctctccgacttcccggtggtgcccacggccacgcgggtggccatcgtgaccttctcctccaagaaccacgt ggtgccacgcgtggactacatctcgccgccgactcgggcgcagcagcggcagcacaagtgcgccctcctcagccgcgaaa tcccggccatcggctaccgagggggcggcacttacaccaagggggctttccagcaagccgcgcaaatactggttcactcc cgtgtaaatgctaccaaggtaatatttttgattacggatggctattccaatggaggggatcctcgtcccattgcagcatc cttgcgtgattttggagtagaaatcttcacatttgggatatggcaaggcaatatcagagagctgaatgacatggcttccc acccaaaggaggaacactgctacttgctccacagttttgcagagtttgaagctttagcacgccgagctcttcatgaagat ttgccttctggaagttacattcaggaagatatagcgtattgctcctacctttgtgaggggactgaaaattgctgtgatgc tatggcgagctgcaaatgtggtacccacacaggacactttgagtgtatttgtgaaaaggggtactacggcaaaggactac agcatgaatgtacaggttccatctctaaccttttcctgaccaggagaatatttggttcacatgaaatcttaaagtaaatg gatggtttgtagctgtactgctcagaaggagccaacattttaacaaattgtgctatgaccatttgagataaatgcattta ctgtatgtgtgctt |
|
Protein
| Protein ID | habu1_s3892_g12906.t1 |
|---|---|
| Definition | - |
>habu1_s3892_g12906.t1 MWLAGVYLWVGGALAWAPVQPRSQPRPFNLSSLAALSAPFKPASHGPLLPEPPVAATTTGNKVEKLGRAFKRQVRQLREK SDRLELVFLVDESSSVGQANFLSELRFVKKLLSDFPVVPTATRVAIVTFSSKNHVVPRVDYISPPTRAQQRQHKCALLSR EIPAIGYRGGGTYTKGAFQQAAQILVHSRVNATKVIFLITDGYSNGGDPRPIAASLRDFGVEIFTFGIWQGNIRELNDMA SHPKEEHCYLLHSFAEFEALARRALHEDLPSGSYIQEDIAYCSYLCEGTENCCDAMASCKCGTHTGHFECICEKGYYGKG LQHECTGSISNLFLTRRIFGSHEILK |
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