Gene
| Gene Model ID | habu1_s3892_g12915 |
|---|---|
| Locus | habu1_scaffold3892 : 522440 ... 526157 : + |
| To GenomeBrowser | habu1_scaffold3892:522440..526157 |
| Genes list of scaffold | habu1_scaffold3892 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase topors | GO:0005929 GO:0006511 GO:0008270 GO:0008630 GO:0010604 GO:0016567 GO:0016604 GO:0016874 GO:0019787 GO:0031325 GO:0034504 GO:0043234 GO:0044450 GO:0080090 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3892_g12915.t1 | 1 | 1 | zf-C3HC4_3 | 8 | 55 | 1.7e-08 | 33.9 | 2.7e-11 | 3.4e-08 | 33.0 |
| habu1_s3892_g12915.t1 | 1 | 1 | zf-RING_2 | 10 | 50 | 3.8e-09 | 36.2 | 8.2e-12 | 1.0e-08 | 34.8 |
| habu1_s3892_g12915.t1 | 1 | 1 | zf-RING_5 | 10 | 51 | 3.6e-06 | 26.5 | 7.5e-09 | 9.2e-06 | 25.2 |
| habu1_s3892_g12915.t1 | 1 | 1 | zf-C3HC4_2 | 11 | 49 | 8.5e-10 | 38.4 | 1.7e-12 | 2.2e-09 | 37.2 |
| habu1_s3892_g12915.t1 | 1 | 1 | zf-C3HC4 | 11 | 49 | 2.1e-09 | 36.8 | 4.3e-12 | 5.4e-09 | 35.5 |
| habu1_s3892_g12915.t1 | 1 | 1 | zf-C3HC4_4 | 11 | 49 | 5.6e-07 | 29.3 | 1.2e-09 | 1.5e-06 | 27.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3892_g12915.t1 | gi|591381438|ref|XP_007065255.1| | PREDICTED: E3 ubiquitin-protein ligase Topors [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.6 |
| Venom grand-1 | 1.7 |
| Pit, infrared sensing | 2.5 |
| Nose | 2.7 |
| Brain-1 | 1.3 |
| Eye | 2.0 |
| fetal fibroblast | 5.6 |
| venom gland-2 | 2.6 |
| Brain-2 | 1.2 |
| Spleen | 3.0 |
| Lung | 1.9 |
| Liver | 2.2 |
| Kidney | 2.4 |
| Pancreas | 1.7 |
| Small intestine | 1.9 |
| Large intestine | 2.2 |
| Stomach | 2.0 |
| heart | 1.8 |
| ovary | 19.1 |
| cheek muscle | 1.7 |
Transcript
| Transcript ID | habu1_s3892_g12915.t1 |
|---|---|
| Definition | - |
>habu1_s3892_g12915.t1 gccgctggcaccaacggtctaaatcgagcttgatacccctggcaaattttttcccaaaggataattcactcatacctggc aaaaacaggctgcatcagacaatgccagaggaaatatctccagattctaagtgcccaatctgcctggacttgtttgaaaa tgtggcttatttggatcgttgttggcacagattctgcttccggtgtgtgttggagtggtccaaaaacaaagcagaatgcc cactttgtaaacagccctttcgttccatcgtgcacagcatgcgatctgcagacgactacaaggtgcattctgttaggcct tcagaaatggaaacttttgctaatcctaatgggaggcgattccgttacccgaccaccttaacaggagaacatcctgcacg tgttaatccccaaaggacttcctcctctcgaaggacaatgtcttccccaaattgtgggatcttgttcgaagggttatcaa ctcagacaacaaggcagagagatgcagaaatgcatcagatgatcagacggcttgcatcaaggcgacaagctagtttggag ggtagatttatgcgacacattcaagagcaagagatgattagctttcgaaaaggtctgtatcgttctggcacacgtgtgag aagtattgaagatggagggcgttatcgggatatatcggctgaatttttccgcaggaatcctgcctgccttcataggctgg ttccatggttaaaacgtgaacttaccgttctttttggcattcatggatccctaattaatatcgtacaacgtataataatg aataatttgatcaagtttgatttagaaagcgaagcattttctaatgaattacagccctttttactccaaagcacagaaca cttcttacacgaatttgtcaactttgctcgatgcccttttaacatagacgcatatgatgagcatgcaaattatgactgtc cggctccaccacgtgaagacggaagcaactctgagtcttccattattaccatctctcctgatgagactgaaacccaggca ccagaagtgaacgctttcagaagtgacacgggccaggcaccctgggatgacgaaacgcctggcccgtcttattccaactt agagcagattcatgcttctgcatccactgctccagacagttctgaaagctctgatgaagacccttctgcgaatataactg ggttgcaggtgtcagaacaagcaaatatagaggtgaatggcgacagctgtgattcttcagacaactgtgttattgttgac tatgtcaagcccctagctgagagaacacctgagcttgttcagctgtcctcagattctgacatttcagcagatgatgggaa aaaagaagacatgaataaagtgcagcctacccaattgcgcagttttagcgatagtgatggtagtaggtctgcatcaccat catctgccgggtccagagatgattctgccagtcttaagattaatgactgtctctccgatgaaaaaaggaaatctaagagg agtgaaaaagatgaaaataaattaagagaagtgtcttcattacaaagcttttcttcaaaggaagcctcttatggatataa tgcatcgaaaagaaggaaatctgagtcgcatatgcagcactctgacagagagcatcacagttcgaaaaggaagaggaagc atcgcagcagggaaaaacgaaaaaagaagagagatggcagtagacataagcacaaaaagaataaaaagagatcaacccga gaaaagagtacatcccgttctctttctccaagtagtgaaagcactgaatctagagatttaagtgggtcacgatctcgaag cagagagtatagtggaatttccagaagtaaagacactgattattatttgagagacgattaccaaaaaaacagaaaaagag gtgaatatgctttatacagtccaaatgctatcagaggttatgaaagacttcgatcaagaaaccggtcaagaagccgattt agcagcagatccagaagcagatccagcagcagatccagaagtcgatctagcagcagatccagaacttccaggcatcctga tagaggccattctgaaaagccaggtgggaaaaggaaatacaaaacacgtcacttggagagcacccagaggggtagtgagg aaacctcttctgtaagagaaagcaattctctaaagaaatccttaccaaaggaccagaccatttgtggaaaagtgattagt gttgcagacaggcaacctcaaacagagactcgacacaagaagaagaagaagcggtcaagaagcccaagtgttgaaattat ttacgaaggtgtgtgtacatcaagatacgacaaaaagaaaacaaaaagaattaagtctaccaatcctatcaattcctctc cactatcttctgttgtaattacaattgacagtgatagtgatagagagaatggcattacagaccctgaatttttcaaccag ttgccaactaagagatcatctttgtttttacgtctggcacaaatgataaatggcaattcacactgccagctacattcacc agagcaagatgtgtaattttttaaacttttttttttttttaaaaaaaaataagatttttcatcttaggataggttaggcc gtagatgtagattttttttagcttttaatgtttttattaattatttactattgtttttaacttaaaggcaaaaagagtaa cttgttttatgaaataaattttattaaataaataaactgt |
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Protein
| Protein ID | habu1_s3892_g12915.t1 |
|---|---|
| Definition | - |
>habu1_s3892_g12915.t1 MPEEISPDSKCPICLDLFENVAYLDRCWHRFCFRCVLEWSKNKAECPLCKQPFRSIVHSMRSADDYKVHSVRPSEMETFA NPNGRRFRYPTTLTGEHPARVNPQRTSSSRRTMSSPNCGILFEGLSTQTTRQRDAEMHQMIRRLASRRQASLEGRFMRHI QEQEMISFRKGLYRSGTRVRSIEDGGRYRDISAEFFRRNPACLHRLVPWLKRELTVLFGIHGSLINIVQRIIMNNLIKFD LESEAFSNELQPFLLQSTEHFLHEFVNFARCPFNIDAYDEHANYDCPAPPREDGSNSESSIITISPDETETQAPEVNAFR SDTGQAPWDDETPGPSYSNLEQIHASASTAPDSSESSDEDPSANITGLQVSEQANIEVNGDSCDSSDNCVIVDYVKPLAE RTPELVQLSSDSDISADDGKKEDMNKVQPTQLRSFSDSDGSRSASPSSAGSRDDSASLKINDCLSDEKRKSKRSEKDENK LREVSSLQSFSSKEASYGYNASKRRKSESHMQHSDREHHSSKRKRKHRSREKRKKKRDGSRHKHKKNKKRSTREKSTSRS LSPSSESTESRDLSGSRSRSREYSGISRSKDTDYYLRDDYQKNRKRGEYALYSPNAIRGYERLRSRNRSRSRFSSRSRSR SSSRSRSRSSSRSRTSRHPDRGHSEKPGGKRKYKTRHLESTQRGSEETSSVRESNSLKKSLPKDQTICGKVISVADRQPQ TETRHKKKKKRSRSPSVEIIYEGVCTSRYDKKKTKRIKSTNPINSSPLSSVVITIDSDSDRENGITDPEFFNQLPTKRSS LFLRLAQMINGNSHCQLHSPEQDV |
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