Gene
| Gene Model ID | habu1_s3892_g12916 |
|---|---|
| Locus | habu1_scaffold3892 : 530760 ... 565782 : + |
| To GenomeBrowser | habu1_scaffold3892:530760..565782 |
| Genes list of scaffold | habu1_scaffold3892 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx58 isoform x1 | GO:0002682 GO:0003723 GO:0008152 GO:0016817 GO:0031347 GO:0032481 GO:0032879 GO:0043167 GO:0044424 GO:0044763 GO:0045087 GO:0048522 GO:0051607 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3892_g12916.t1 | 1 | 1 | ResIII | 239 | 408 | 3.4e-18 | 66.1 | 2.3e-19 | 4.3e-16 | 59.2 |
| habu1_s3892_g12916.t1 | 1 | 1 | DEAD | 243 | 412 | 2.4e-18 | 66.1 | 3.6e-21 | 6.7e-18 | 64.7 |
| habu1_s3892_g12916.t1 | 1 | 1 | Helicase_C | 667 | 729 | 9.3e-10 | 38.2 | 1.2e-12 | 2.2e-09 | 37.0 |
| habu1_s3892_g12916.t1 | 1 | 1 | RIG-I_C-RD | 803 | 919 | 4.4e-32 | 110.5 | 6.7e-35 | 1.2e-31 | 109.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3892_g12916.t1 | gi|602655369|ref|XP_007433433.1| | PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s3892_g12916.t1 | gi|602655371|ref|XP_007433434.1| | PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s3892_g12916.t1 | gi|591381440|ref|XP_007065256.1| | PREDICTED: probable ATP-dependent RNA helicase DDX58 [Chelonia mydas] | 0.0 |
| habu1_s3892_g12916.t1 | gi|530606212|ref|XP_005294819.1| | PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s3892_g12916.t1 | gi|558162376|ref|XP_006123153.1| | PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform X2 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.0 |
| Venom grand-1 | 2.0 |
| Pit, infrared sensing | 3.3 |
| Nose | 4.3 |
| Brain-1 | 3.3 |
| Eye | 2.5 |
| fetal fibroblast | 2.6 |
| venom gland-2 | 1.6 |
| Brain-2 | 5.0 |
| Spleen | 6.8 |
| Lung | 5.0 |
| Liver | 6.4 |
| Kidney | 1.4 |
| Pancreas | 1.3 |
| Small intestine | 2.9 |
| Large intestine | 5.1 |
| Stomach | 3.5 |
| heart | 13.0 |
| ovary | 14.2 |
| cheek muscle | 4.0 |
Transcript
| Transcript ID | habu1_s3892_g12916.t1 |
|---|---|
| Definition | - |
>habu1_s3892_g12916.t1 gaactactttcggtttcctacgtttctccagtcgcgtttcctcctttggggaaacttccttcactttcgattcttgcttc tgggcggctgattctgaggaatcgagtgggtcttgaagcggaggagtttcattggacggcttagcccgtcctcggcaggc tgctttttaagctgctccccccactgttagttttagaactgcgaacaagcgatcttgcggacggatttttgatttctttg tggggattttttgtggggaagagttggaagaaaaacggaacacgagagagagagagagagagagagagagagaaaaccca actattgcaacgccggaggtttaaggagaaaggagtaaaatgacggaggtcgaacgagagaatttgcttcgctgcaagga atatatagtgaagactttaaatcctgcttatgtattgagctacatgaaaacctggctgtccgatgagactgtggagctaa ttcaagaggaaagcaaccggccaaccaaggcagcagaactctttcttcaatccattctacagctcaacgtggatggatgg ttccgtggttttctggatgcactacacgcttcagattataccggccttcatgatgcaattgacaaatgggatttcaggat aattgaaagtctggaacctcacaggcaactgttgaaacgaattgaacccgctatgcaggacattgatgtcaaacaaattc ataagttcatggatgcctgcctccgaattcaggaatgggaagagatttataagattagtgaaacgaaaggaagacaagca agtgcaagcaaactgatagaatgtctgtgtagatcagacaaagaaaattggcctaaaaccttccaaatcgcattgcatag gtctggacacgacaagcaaatcgagctatgggatttgaaaggagctgataatgcagatgttgaaatggcagatgaagatg aagacagctgtgtttttgaaatacagatttctgaagaagcagaatctgacaatctttgtgaaaattcatgttcaccttca gatgccttccagcagcccagatatgttccgaggaagccaaggagctatcagatagaacttgctgagcctgctctcaaggg caaacacaccatgatttgtgcccctaccggatctgggaagactcttgtgtctattatgatatgtgagcatcatctccgca acaggcctgctgggcagaacggaaaagtggtcttcctcgctacaaaagttccagtttacgaacaacagaagaaagtcttc tgtgaatacttcaaaaatgactacaacattgcaggcatctgtggggaaaatgcttccaagtctcctgcagaaatagttat taaacagaatgatatcattgtcatgacaccccagactcttttgaactctctgactaatgagacagttctttctctttcaa tattcacgttgatgatattcgatgagtgccacaacactacggggagtaatccatataatatgttaatgtccaagtacttg gaccttaaactgaagcaaggtgcagttctgctacctcagattgtaggattgaccgcttctcctggcattggcaatgccaa aaacgtaggggaggccatagactacatctgcaacatttgtgcttccctcaatattgaagtgatctcaacggtcagaaaga acataaaggacttggaagaaattgttcctaaacctgaaaaaattattaagcttgttgggactcgtccacaaaatcgcttt gtagatattgtatctcagatgatgtcgaaagcagaggatctagcaagacaatttcatcctattgataacatgtctgtgat gaagaatcggtgttacgggacccagaaatatgagcagtggatagtcgatgtgcagaagaaagctgtggtgttacagttgc caaataaggaagaagaaagccgagtctgcagggctctttttatttgcacgcagcacctccggaaatacaatgatgcctta atcatcaatgaagacgcccgaaccaaagatgctttgatttatctgaaggattattttgaggatgccaaaaatggcgactt tgataatattgaacagcatctggcttcaaatttcgaagttaatttgccagaactcacggctgcttccgaagatgaatcca atgaaaaccctaaactggaagatattacagagattctgggagagatatatcatgtcaaccctgagacacgtaccattctc ttcgtgaagacaagagcactgctggcagcattgaagaattggatagaagaaacacctgaacttaagcatctgaagccaca ggcactgatgggacgtgggaaaagaaaccattgcacaggcatgaccctcccaaatcaaaaagggactttggatgccttcc aaaccaatggggacagcaagcttctaatagcaacttcagttgctgacgaagggatcgatattgctgagtgcaacctgatc ctgctttatgaatatataggcaatgtcatcaaaatgatacaagtcagaggtcgtggaagagcaaaagacagcaagtgcat tcttgtgacgagcaaaaaagaacaggaagagaaggagaggtacaatttagaaaaggagcaaatgatgaacagagctattg aagaggtacagagctgggatgaaaagatctttgcacagaagataaacgtgtttcaaaagcagctaataaaaatgctagat tccaagaaaaaaacgacagaatcaaaaccctggaaaaagaatagagttctcttgtgtggcaaatgcaagaagctggcctg cagtacggaatatctccgggtgattgaggactcgcaccatactgttttgggcgagaaatttaaaacacggtatgtcacag aacctcataagaaggcacgcaactacgggaattttgagaaaaaattcaagatgtattgcaccagctgccatcacgactgg ggaatcgttgtgaagtacaagacctttgacaacatgcccatcatcaaaattgagagcttttccgtgcaggatgttgttag caacgagcagatttatttctcaaaatggaaggatgttgattttgcaatgaaagacttcgatattgaagaaatgtctgagt gaagtgctgcctattcaaacttctgtttataatcttgcatgatctagttaattctgcttttaaagtcaaattggtaa |
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Protein
| Protein ID | habu1_s3892_g12916.t1 |
|---|---|
| Definition | - |
>habu1_s3892_g12916.t1 MTEVERENLLRCKEYIVKTLNPAYVLSYMKTWLSDETVELIQEESNRPTKAAELFLQSILQLNVDGWFRGFLDALHASDY TGLHDAIDKWDFRIIESLEPHRQLLKRIEPAMQDIDVKQIHKFMDACLRIQEWEEIYKISETKGRQASASKLIECLCRSD KENWPKTFQIALHRSGHDKQIELWDLKGADNADVEMADEDEDSCVFEIQISEEAESDNLCENSCSPSDAFQQPRYVPRKP RSYQIELAEPALKGKHTMICAPTGSGKTLVSIMICEHHLRNRPAGQNGKVVFLATKVPVYEQQKKVFCEYFKNDYNIAGI CGENASKSPAEIVIKQNDIIVMTPQTLLNSLTNETVLSLSIFTLMIFDECHNTTGSNPYNMLMSKYLDLKLKQGAVLLPQ IVGLTASPGIGNAKNVGEAIDYICNICASLNIEVISTVRKNIKDLEEIVPKPEKIIKLVGTRPQNRFVDIVSQMMSKAED LARQFHPIDNMSVMKNRCYGTQKYEQWIVDVQKKAVVLQLPNKEEESRVCRALFICTQHLRKYNDALIINEDARTKDALI YLKDYFEDAKNGDFDNIEQHLASNFEVNLPELTAASEDESNENPKLEDITEILGEIYHVNPETRTILFVKTRALLAALKN WIEETPELKHLKPQALMGRGKRNHCTGMTLPNQKGTLDAFQTNGDSKLLIATSVADEGIDIAECNLILLYEYIGNVIKMI QVRGRGRAKDSKCILVTSKKEQEEKERYNLEKEQMMNRAIEEVQSWDEKIFAQKINVFQKQLIKMLDSKKKTTESKPWKK NRVLLCGKCKKLACSTEYLRVIEDSHHTVLGEKFKTRYVTEPHKKARNYGNFEKKFKMYCTSCHHDWGIVVKYKTFDNMP IIKIESFSVQDVVSNEQIYFSKWKDVDFAMKDFDIEEMSE |
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