Gene
| Gene Model ID | habu1_s3922_g12957 |
|---|---|
| Locus | habu1_scaffold3922 : 1 ... 20086 : + |
| To GenomeBrowser | habu1_scaffold3922:1..20086 |
| Genes list of scaffold | habu1_scaffold3922 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sh2 domain-containing protein 3c | GO:0005085 GO:0043547 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3922_g12957.t1 | 1 | 1 | SH2 | 21 | 101 | 2.4e-15 | 56.0 | 6.6e-19 | 4.9e-15 | 55.0 |
| habu1_s3922_g12957.t1 | 1 | 1 | RasGEF | 445 | 523 | 1.4e-15 | 57.5 | 3.3e-19 | 2.5e-15 | 56.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3922_g12957.t1 | gi|602657596|ref|XP_007434514.1| | PREDICTED: SH2 domain-containing protein 3C [Python bivittatus] | 0.0 |
| habu1_s3922_g12957.t1 | gi|637372423|ref|XP_008122322.1| | PREDICTED: SH2 domain-containing protein 3C [Anolis carolinensis] | 0.0 |
| habu1_s3922_g12957.t1 | gi|530600023|ref|XP_005293503.1| | PREDICTED: SH2 domain-containing protein 3C [Chrysemys picta bellii] | 0.0 |
| habu1_s3922_g12957.t1 | gi|686616506|ref|XP_009285162.1| | PREDICTED: SH2 domain-containing protein 3C [Aptenodytes forsteri] | 0.0 |
| habu1_s3922_g12957.t1 | gi|729745717|ref|XP_010569286.1| | PREDICTED: SH2 domain-containing protein 3C isoform X2 [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.1 |
| Venom grand-1 | 1.3 |
| Pit, infrared sensing | 2.3 |
| Nose | 5.1 |
| Brain-1 | 4.9 |
| Eye | 2.3 |
| fetal fibroblast | 0.2 |
| venom gland-2 | 0.5 |
| Brain-2 | 4.3 |
| Spleen | 8.2 |
| Lung | 4.7 |
| Liver | 1.1 |
| Kidney | 1.3 |
| Pancreas | 1.3 |
| Small intestine | 1.4 |
| Large intestine | 2.7 |
| Stomach | 1.3 |
| heart | 5.7 |
| ovary | 0.4 |
| cheek muscle | 1.7 |
Transcript
| Transcript ID | habu1_s3922_g12957.t1 |
|---|---|
| Definition | - |
>habu1_s3922_g12957.t1 cttcacaaggagttggaagaggagctgaaactcagcagctcagacctgaggagtcacgcctggtatcatggccgcatccc ccgggaggtgtcggaaagcctggtgcagaggaacggggattttttgatccgcgactcactcaccagcctgggcgattacg tgctgacgtgccgctggcggaacgaagccctccacttcaagatcaacaaggtgatggtgaaatccggcgaagggcgcacc cacatccagtacctctttgagcaggagagtttcgacaacgtcccggccttggtgcgcttctacgtgggcaaccggaagcc catctcggaacagagcaatgccatcttctactgccccatcaaccgcacgttcccgctgcgttacctggaggccagctacg gactggccaatgggaagcacagtagctcccatagccactctgggcagaaaggggggcacatcaaaaggaggagcatcacc atgacggacggactgaccgcggacaagatcaccaggagcgatgggtgtcccaccagtgtctccttgccgcatcaccggga catcattcggaactgcgctgtcagtgtggaccagatccaagacctccactccccaatgtcacccatcgccgagaccccag ccactccagcttacagcactgttactcgtctcaaaccacaagcgagccaagctggcaacggcgccaccccgtcatccccg gtcatccgacgctctagcgagccgcagctatgccaggggaacggcagtaaaagcgagctgtcggacagcacccactcaac cccttcccacggatgctccagggcgtccccttctccgtctgccagcagctacagcgacccagattcaggacattattgcc agcttcacccgccctctccggtccagtgggacaggccaatgcccgacaacaaagtgatgccaaccaagagttacgtggag aggctaaagggggacgaatgccagcgaggatttgtcctgaacggttccgaaggagaagctgggcccaggaagaggccgga gcaggacatgataggctttgtggtcccggtggtggaaaggacatcctcgttcaatcccgcgctgttccattccttgctta ttccgggggaaaataaacctctggaaatgatggtgctgaagaagatcaaggaactgcttgccgaaggggacgccaggact ctcgccaagcatatcacccacgtggattgcctggttgctaggatactgggggttaccaaggagacccagaggctcatggg agtcagctcagggatggagctgctcaccctgccccacggacatcaacttcgcctggatttgttggaaaggttccacacca tgaccatcatgattgcggtggatattctggggtgcacaggcagcattgaggagcgggcctctctgctccacaagaccatt cagctggcggccgagctgaagaccatgggcaacatgtacagctttgccgctgtgatgaacgcgctggagatgacccagat ctcccgcctggagcaaacctggatggttttacgccagcgttacacggagggtgccattctttacgagaagaagctgaagc cttttctcaagagcctcaacgaaggaaaagaaggaccacccttatctaacaccaccttccctcacattgtgcctctcatt actcttctggagagggacacggcgctgccggaccaccctgaaccctgggagaacctggacaacagcgtggaggtagttat ggcccatctggaggcggcacgcacagtggcccaccacgggggactgtaccacaccaatgcggaggtgaagctgcaagggt tccagccacaaccggagcttctggaggtttttagcaccgaatttcagctccggctattatgggggagccggggggccgaa agcagccagagcgagcgctacgagaagttcaacaaggtcctcaccgccctgtcccacaaattggagccagcagtgcgttc gagcgagttgtagctggacaacgggcgcaagattgcaacgaatgcgcctgcagcttgctttctgacagcagtgggtctcg agcgatgctaaagtggtagggttggaccgaaagggatgcagctgagacccccccccaaaaaaggcctttccagcatgaaa tactgacaatcactgggttgactttgttcctgcaaaacttgacaacgaccgagttcctccaggcaaacaatggaagagaa tgcactggccaagcatgttagatatcagccatgcagattcgtgttgaagagctgcagtgtggctcatgagagaggcaaaa cttccgagtttaaattcagcaccgattcatagccaatttcaggcccaggtttggtgccccacagtggggtttgaaaccaa gagtgcaggaatcttctctctgctccttctattactttgaggttcccctgttctcttttccatcgccatgaattggagaa gagcagtttccaccagctttgggggctgatcatagtttgtctagtgccccaatctcagaaggacctgggtgacaaggcac acccgcagacagtaaggcagcccccaaatttagcttttctatgttcatgggcatctctgatcatcgctaacattcaatct acacccaacttaatccatcaaccgtaagccttccagagtagccacatgacaagatggatggtaaataaatgtaattataa ataaaaaaaaatcaggtaaagttaggccactgccatctttctttccagggatccccaagtcccaatctcagtccttccat tgacgccaagtaacattcctttattttcttaaagtctctttttcttttgcttccctccattttgatgcagggaatgagtg tggttttgtaaatttttaaaaaaatccatgtggggtgtatatgtatctataaatatatatatatacatatgtattcagat ctcatatgtaaataattgacatggttcttttcggtcttgtaaatgaatgtacagatacaatgaagtgtctttcctcgatt cttgcatacaataaacttttatgctttttttcttcaa |
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Protein
| Protein ID | habu1_s3922_g12957.t1 |
|---|---|
| Definition | - |
>habu1_s3922_g12957.t1 LHKELEEELKLSSSDLRSHAWYHGRIPREVSESLVQRNGDFLIRDSLTSLGDYVLTCRWRNEALHFKINKVMVKSGEGRT HIQYLFEQESFDNVPALVRFYVGNRKPISEQSNAIFYCPINRTFPLRYLEASYGLANGKHSSSHSHSGQKGGHIKRRSIT MTDGLTADKITRSDGCPTSVSLPHHRDIIRNCAVSVDQIQDLHSPMSPIAETPATPAYSTVTRLKPQASQAGNGATPSSP VIRRSSEPQLCQGNGSKSELSDSTHSTPSHGCSRASPSPSASSYSDPDSGHYCQLHPPSPVQWDRPMPDNKVMPTKSYVE RLKGDECQRGFVLNGSEGEAGPRKRPEQDMIGFVVPVVERTSSFNPALFHSLLIPGENKPLEMMVLKKIKELLAEGDART LAKHITHVDCLVARILGVTKETQRLMGVSSGMELLTLPHGHQLRLDLLERFHTMTIMIAVDILGCTGSIEERASLLHKTI QLAAELKTMGNMYSFAAVMNALEMTQISRLEQTWMVLRQRYTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHIVPLI TLLERDTALPDHPEPWENLDNSVEVVMAHLEAARTVAHHGGLYHTNAEVKLQGFQPQPELLEVFSTEFQLRLLWGSRGAE SSQSERYEKFNKVLTALSHKLEPAVRSSEL |
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