Gene
| Gene Model ID | habu1_s3922_g12958 |
|---|---|
| Locus | habu1_scaffold3922 : 21736 ... 28228 : + |
| To GenomeBrowser | habu1_scaffold3922:21736..28228 |
| Genes list of scaffold | habu1_scaffold3922 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| torsin- partial | GO:0005524 GO:0005788 GO:0051085 GO:0051260 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3922_g12958.t1 | 1 | 1 | Torsin | 40 | 165 | 1.49939e-42 | 144.4 | 5.60519e-45 | 6.09985e-42 | 142.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3922_g12958.t1 | gi|602657594|ref|XP_007434513.1| | PREDICTED: torsin-2A, partial [Python bivittatus] | 0.0 |
| habu1_s3922_g12958.t1 | gi|733914159|ref|XP_010719427.1| | PREDICTED: prosalusin, partial [Meleagris gallopavo] | 0.0 |
| habu1_s3922_g12958.t1 | gi|591364986|ref|XP_007057391.1| | PREDICTED: torsin-2A [Chelonia mydas] | 0.0 |
| habu1_s3922_g12958.t1 | gi|727012540|ref|XP_010395980.1| | PREDICTED: prosalusin [Corvus cornix cornix] | 0.0 |
| habu1_s3922_g12958.t1 | gi|56090243|ref|NP_001007745.1| | torsin-2A precursor [Rattus norvegicus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.9 |
| Venom grand-1 | 1.0 |
| Pit, infrared sensing | 0.7 |
| Nose | 1.4 |
| Brain-1 | 0.2 |
| Eye | 0.6 |
| fetal fibroblast | 3.6 |
| venom gland-2 | 1.7 |
| Brain-2 | 0.2 |
| Spleen | 0.7 |
| Lung | 0.6 |
| Liver | 2.0 |
| Kidney | 0.5 |
| Pancreas | 0.6 |
| Small intestine | 2.5 |
| Large intestine | 1.2 |
| Stomach | 0.5 |
| heart | 0.1 |
| ovary | 1.3 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s3922_g12958.t1 |
|---|---|
| Definition | - |
>habu1_s3922_g12958.t1 ggaagccaggaattccattcgctctccgcctgcgagcacgagccgggccgcggggcaggccgggagtgggccgccgcacg aggagacgcgggagcgcgcttcccgaccctctcgcgggcggacagccagcatggagaggggcgggggcgccctcgcggga acgcggctgctgctgctgctgctgctcttgctgcctctgccggggttgatgctctcgggcgccccctgggggccgagcgc ctggcattgcagcctgtcggcgtcctgcgaatgcgaattctgccctgatttaacgggcctcgagtgcgagttagccctgc gcctggtggggcagcctctggccaggcagctggtcatccaaggcctgaagaagtttgtgcaggatcccgagcccaccaag cccctggtcctgtccttccacggctcgacgggcaccggcaagaccttcctgacctccctgctggcccagcacctcttccg gacgggcctccggagcccctacatccaccgcttctccccgctggtacactttccccatgctgaccggctccagcaataca aggacgatctcagaagctggatcgagggcaatctgacccagtgtggccgttcccttttcctcttcgacgagatggacgat ctgcatccaggcttgatcgaggtcattgcgcccttcctgggaccttcctgggtggtgtacgggaccaactatcggaaagc catcttcgtctttatcagcaatacgggcacggagcagattaaccggatggctttggacctctggcgggaccgcagagacc gcgaggaaatcagtcgtcaggatctggaagcgtcgattttggaggccatttctaaagacccgcaaaacggattctggaaa tccgggatccttgagcaaaagctgatcgacgtcttggtgcccttcctcccgttgcgacagcaccacgtgaagcagtgcgt ggtcaacgagatggccggccagggtctcctccctcgcccggaggtcgtggacggggtagccagcagcttttcctacttcc ccaacgaggaaaaaatcttttcctccaccggatgcaaaaccgtatcttcccgcatcccgtttttcctatgacctctttgg agacgttttcccggtccggaatggagtttacggttttcttccaagtcatgaccatttctgggttctgaaggaccaaggac ggggtctttttaaaggcaaagaatgatgctggcttgatcaaacgtgatgcccccttacaccttggcctggaatccggctt tttttgaattctgaaggagaagattctgtgacgcattacgcggggggatcttgccttgcttttaaaacactgttcctcgg aacgttttacaaattcctgccgttag |
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Protein
| Protein ID | habu1_s3922_g12958.t1 |
|---|---|
| Definition | - |
>habu1_s3922_g12958.t1 MERGGGALAGTRLLLLLLLLLPLPGLMLSGAPWGPSAWHCSLSASCECEFCPDLTGLECELALRLVGQPLARQLVIQGLK KFVQDPEPTKPLVLSFHGSTGTGKTFLTSLLAQHLFRTGLRSPYIHRFSPLVHFPHADRLQQYKDDLRSWIEGNLTQCGR SLFLFDEMDDLHPGLIEVIAPFLGPSWVVYGTNYRKAIFVFISNTGTEQINRMALDLWRDRRDREEISRQDLEASILEAI SKDPQNGFWKSGILEQKLIDVLVPFLPLRQHHVKQCVVNEMAGQGLLPRPEVVDGVASSFSYFPNEEKIFSSTGCKTVSS RIPFFL |
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