Gene
| Gene Model ID | habu1_s3922_g12963 |
|---|---|
| Locus | habu1_scaffold3922 : 153066 ... 161806 : + |
| To GenomeBrowser | habu1_scaffold3922:153066..161806 |
| Genes list of scaffold | habu1_scaffold3922 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable trna pseudouridine synthase 2 | EC:5.4.99.12 GO:0001522 GO:0006396 GO:0009982 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3922_g12963.t1 | 1 | 1 | TruB_N | 3 | 133 | 5.4e-19 | 68.8 | 4.9e-23 | 7.2e-19 | 68.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3922_g12963.t1 | gi|602656791|ref|XP_007434125.1| | PREDICTED: probable tRNA pseudouridine synthase 2 [Python bivittatus] | 0.0 |
| habu1_s3922_g12963.t1 | gi|327288564|ref|XP_003228996.1| | PREDICTED: probable tRNA pseudouridine synthase 2 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s3922_g12963.t1 | gi|677651667|ref|XP_009077530.1| | PREDICTED: probable tRNA pseudouridine synthase 2, partial [Acanthisitta chloris] | 0.0 |
| habu1_s3922_g12963.t1 | gi|543746518|ref|XP_005514040.1| | PREDICTED: LOW QUALITY PROTEIN: probable tRNA pseudouridine synthase 2, partial [Columba livia] | 0.0 |
| habu1_s3922_g12963.t1 | gi|704532286|ref|XP_010182224.1| | PREDICTED: probable tRNA pseudouridine synthase 2, partial [Mesitornis unicolor] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.5 |
| Venom grand-1 | 9.8 |
| Pit, infrared sensing | 5.5 |
| Nose | 4.5 |
| Brain-1 | 4.9 |
| Eye | 6.8 |
| fetal fibroblast | 13.1 |
| venom gland-2 | 13.5 |
| Brain-2 | 6.5 |
| Spleen | 6.4 |
| Lung | 6.0 |
| Liver | 9.4 |
| Kidney | 7.6 |
| Pancreas | 11.8 |
| Small intestine | 5.7 |
| Large intestine | 6.0 |
| Stomach | 9.3 |
| heart | 15.6 |
| ovary | 5.4 |
| cheek muscle | 14.2 |
Transcript
| Transcript ID | habu1_s3922_g12963.t1 |
|---|---|
| Definition | - |
>habu1_s3922_g12963.t1 tatgctggctgaccatcctttagtttcgggaccggtttttacgcagttaaacgttggagcaggccctcgtctggacatgc aatcgtccggagtgtttgtactcggcgtgggtcacggcaccaagctgctcaaagattggtacaatgcacatcttaccagg gcatacaccgttagcggcttgtttggcaaagccaccgacaatttctcggacaccgggaagctgattgagaagagcacatt tgatcacgtaacgcgggagaagctggagcggattgtttcggtgatccagggatccaatcacaaggctttactgcagtggg ctaacctggacttgaaaactcaagaagtctacgagttggctgtcaagggcctcattcggcccatggacaatagcccgcct ttgatcacggctgtgcgatgtctccgatttgatccacctgaattccagctggaaattcactgcttgcacgaaacccaaca gtatctccgcaagatagttcacgaaatagggttggaactgaagaccacggcggtgtgcacccaagtgaggcggtttcggg acggcgtccttgtgctggaggacgcactgctgaggacacagtgggacctccctaacatccagcgggcaattttgcaagtc aaacagaaagtagacgctgaacttgaaagcagtcttgggcgcctgaagcctggggtggagggtgaaagagaccgaatctg acccagatccagaattcaataggaaatttgctagaattctcggaatattggggaaaagcctggtgaaaaatcctgggaat tccaatttttagcttggatcagaaagttccaagttggcatgttcctctctaaacaacatgccaaggatattgcaatttga aagagaaagaaagaaagaaagaagaaagaaagaagaaaggaagaaaaagaaagaaagaaagaaagaaagaaaggaagaaa gaaagaaaggaaggaaggaaggagggagggacgaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag gaaggaaggaaggaagattggatactgtgcccagatccagcacagcaaaattagttgttgtggctgaaattggatatttc aaagtaacacattgttaccacagttgtgtatttcaaacaccaaccaaatttctattaaaataagctattttgtttcttcc tagcacggaaataaacattcttagcagatgttggtta |
|
Protein
| Protein ID | habu1_s3922_g12963.t1 |
|---|---|
| Definition | - |
>habu1_s3922_g12963.t1 MQSSGVFVLGVGHGTKLLKDWYNAHLTRAYTVSGLFGKATDNFSDTGKLIEKSTFDHVTREKLERIVSVIQGSNHKALLQ WANLDLKTQEVYELAVKGLIRPMDNSPPLITAVRCLRFDPPEFQLEIHCLHETQQYLRKIVHEIGLELKTTAVCTQVRRF RDGVLVLEDALLRTQWDLPNIQRAILQVKQKVDAELESSLGRLKPGVEGERDRI |
|