Gene
| Gene Model ID | habu1_s3964_g12994 |
|---|---|
| Locus | habu1_scaffold3964 : 54466 ... 78355 : - |
| To GenomeBrowser | habu1_scaffold3964:54466..78355 |
| Genes list of scaffold | habu1_scaffold3964 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ef-hand domain-containing family member b | GO:0005509 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3964_g12994.t1 | 2 | 1 | EF-hand_1 | 334 | 357 | 1.6e-12 | 45.7 | 3.6e-08 | 6.6e-05 | 21.9 |
| habu1_s3964_g12994.t1 | 2 | 1 | EF-hand_6 | 334 | 356 | 8.3e-11 | 40.8 | 1.6e-07 | 0.00031 | 20.3 |
| habu1_s3964_g12994.t1 | 1 | 1 | EF-hand_7 | 335 | 393 | 2.5e-10 | 40.3 | 1.1e-12 | 2.1e-09 | 37.3 |
| habu1_s3964_g12994.t1 | 1 | 1 | EF-hand_8 | 346 | 394 | 9.0e-07 | 28.4 | 2.8e-09 | 5.2e-06 | 25.9 |
| habu1_s3964_g12994.t1 | 1 | 1 | EF-hand_10 | 348 | 395 | 1.6e-06 | 27.6 | 8.4e-09 | 1.6e-05 | 24.5 |
| habu1_s3964_g12994.t1 | 2 | 2 | EF-hand_1 | 370 | 395 | 1.6e-12 | 45.7 | 6.7e-08 | 0.00012 | 21.0 |
| habu1_s3964_g12994.t1 | 2 | 2 | EF-hand_6 | 370 | 395 | 8.3e-11 | 40.8 | 4.2e-07 | 0.00078 | 19.1 |
| habu1_s3964_g12994.t1 | 1 | 1 | EF-hand_5 | 370 | 393 | 5.0e-08 | 31.9 | 2.4e-06 | 0.0044 | 16.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3964_g12994.t1 | gi|602638155|ref|XP_007425909.1| | PREDICTED: EF-hand domain-containing family member B [Python bivittatus] | 0.0 |
| habu1_s3964_g12994.t1 | gi|637311530|ref|XP_008110920.1| | PREDICTED: LOW QUALITY PROTEIN: EF-hand domain-containing family member B [Anolis carolinensis] | 0.0 |
| habu1_s3964_g12994.t1 | gi|591350615|ref|XP_007053299.1| | PREDICTED: EF-hand domain-containing family member B [Chelonia mydas] | 0.0 |
| habu1_s3964_g12994.t1 | gi|530610998|ref|XP_005297109.1| | PREDICTED: EF-hand domain-containing family member B [Chrysemys picta bellii] | 0.0 |
| habu1_s3964_g12994.t1 | gi|558149137|ref|XP_006120263.1| | PREDICTED: EF-hand domain-containing family member B, partial [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.0 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 1.1 |
| Nose | 3.2 |
| Brain-1 | 0.2 |
| Eye | 0.0 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.3 |
| Spleen | 0.0 |
| Lung | 0.6 |
| Liver | 0.0 |
| Kidney | 0.2 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.8 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s3964_g12994.t1 |
|---|---|
| Definition | - |
>habu1_s3964_g12994.t1 acccgaggaaacatcctcagccattgcccagctggtcagaatggtgggcgggctgccggttaaggggctgcatgggaccg ttaggcaagtgtatcaagggaaaattatagaccggtttcctgagctccccacagctggaaagttgataccaattggagaa actgctgccacttgtcttactgaaatcctacccagaccagttacaccatctgttgtaaaaaagtttagaaacaccagcaa tcctcctacaggtaaagaaagagtattttatggtcgagcaaatgatcctgatattgcatcatatttgactcatggaataa caacctccatttcagagaatgcatcattattagcaaatccacctcctaaaacatacttccaacaaaaaattaaagaaaag aaagaatctgtctacttaagtagctgtcaagctcctcttgggaaatctcatgatcaatccctgcgattgcctaaagaact ggatgtgaataatactcgatttggaacaacagtcaaaagagagatttctgctgcagacattataaatcccagaaagacat ttgatgaagtccaaaaagaagcacaggaaggacatgaattatatgttttgacacacaacgattattatgttggagagaca gtgaatagaaaatataatccatccacattcaacagatttaatctttatggtaaagaaacaccacattttaatgatggccg gaatattgggagaactttacattggttgcatgatctgcagatgaagaaatcagcaaagattgtgtctaaaataagtgatg atttcaatgaaaagtttcagcctcaggttggaaaagttcatgatcccttagcagatacacttaatgttcctccagaccac acatttggaatacttattcggcctgaagaatacggtgttggggatcttcttcataaccggcttccaagtgaatatcttaa gactaaagacagagaacgcgctgtctttgctgcaattcgacaaaatttaaaaaaggcaaattaccacaattttgatactt tattgcatgcatttcggcattatgataaggatggtgatcgaaaaataagcagagaagatttgaaaaagacatgctgtcag cttaacctggacttggatgatgaacttttggattctttatttaattactgtgatttggataaagatggttttatagacta tttggagtttgtaaattttcttaactggaaagacaaaatggctattcaagagtatgaagaaaaaataataacaaaaggga aaaaaccagctccttttgatcttattccagcaaatgattcagaaattaaagctaatgaaaatgctctgctaaagcaggat gatattgtacctatggaaccaggaagtttagaaaaaacatctagaacgctgtcaagaccaactgatcgtgtattttctga ttatcgcacaacctcttctcaatataatgcagttgtaggtggcattccttcatcattttaccccctatatggtattccaa ccattcgttcagatattccggctcctcgttttcgccgtatcagtgacaccactaattatggggatcaagcaactatgtat gcactgttatacccctctgtctataataatagaggagtttatgagaaagacttcttcaggataagatcaaaggaagagat tgcagacattttgcgcaacattggtgtgaaactttcagatgaaagctttgatgaagtatggaggcaggcttgcctgaaag atcacagaggaaaagtttgtgtagaatccatcagaaatgtactagatgagatgcaggcattacacttgaccagctgataa ctattctgcattgaattatgtgatatttatggttgaatatttttattgcagtaaattctcctgttataacatgggtttga gagtctgtgtgtagtgcatatgaagacatttatttatggaaaatattaaattaggtttcatattcatttcaaaatgtatt ttaaaagagtattaaacatccaaaaagaagaaatgtgt |
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Protein
| Protein ID | habu1_s3964_g12994.t1 |
|---|---|
| Definition | - |
>habu1_s3964_g12994.t1 MVGGLPVKGLHGTVRQVYQGKIIDRFPELPTAGKLIPIGETAATCLTEILPRPVTPSVVKKFRNTSNPPTGKERVFYGRA NDPDIASYLTHGITTSISENASLLANPPPKTYFQQKIKEKKESVYLSSCQAPLGKSHDQSLRLPKELDVNNTRFGTTVKR EISAADIINPRKTFDEVQKEAQEGHELYVLTHNDYYVGETVNRKYNPSTFNRFNLYGKETPHFNDGRNIGRTLHWLHDLQ MKKSAKIVSKISDDFNEKFQPQVGKVHDPLADTLNVPPDHTFGILIRPEEYGVGDLLHNRLPSEYLKTKDRERAVFAAIR QNLKKANYHNFDTLLHAFRHYDKDGDRKISREDLKKTCCQLNLDLDDELLDSLFNYCDLDKDGFIDYLEFVNFLNWKDKM AIQEYEEKIITKGKKPAPFDLIPANDSEIKANENALLKQDDIVPMEPGSLEKTSRTLSRPTDRVFSDYRTTSSQYNAVVG GIPSSFYPLYGIPTIRSDIPAPRFRRISDTTNYGDQATMYALLYPSVYNNRGVYEKDFFRIRSKEEIADILRNIGVKLSD ESFDEVWRQACLKDHRGKVCVESIRNVLDEMQALHLTS |
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