Gene
| Gene Model ID | habu1_s3970_g13011 |
|---|---|
| Locus | habu1_scaffold3970 : 484599 ... 499785 : - |
| To GenomeBrowser | habu1_scaffold3970:484599..499785 |
| Genes list of scaffold | habu1_scaffold3970 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinol dehydrogenase 12 | GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3970_g13011.t2 | 1 | 1 | adh_short | 45 | 192 | 1.5e-22 | 80.2 | 8.0e-26 | 2.4e-22 | 79.6 |
| habu1_s3970_g13011.t2 | 1 | 1 | KR | 47 | 136 | 7.6e-09 | 35.4 | 4.4e-12 | 1.3e-08 | 34.7 |
| habu1_s3970_g13011.t2 | 1 | 1 | adh_short_C2 | 54 | 132 | 3.7e-06 | 26.8 | 1.1e-08 | 3.1e-05 | 23.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3970_g13011.t2 | gi|637333949|ref|XP_008115183.1| | PREDICTED: retinol dehydrogenase 12-like [Anolis carolinensis] | 0.0 |
| habu1_s3970_g13011.t2 | gi|726988677|ref|XP_010396104.1| | PREDICTED: retinol dehydrogenase 12-like, partial [Corvus cornix cornix] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.6 |
| Venom grand-1 | 15.0 |
| Pit, infrared sensing | 2.2 |
| Nose | 2.8 |
| Brain-1 | 2.1 |
| Eye | 8.6 |
| fetal fibroblast | 12.7 |
| venom gland-2 | 6.8 |
| Brain-2 | 5.0 |
| Spleen | 1.1 |
| Lung | 1.5 |
| Liver | 247.1 |
| Kidney | 0.4 |
| Pancreas | 0.0 |
| Small intestine | 6.6 |
| Large intestine | 4.1 |
| Stomach | 1.2 |
| heart | 0.8 |
| ovary | 58.1 |
| cheek muscle | 1.1 |
Transcript
| Transcript ID | habu1_s3970_g13011.t1 |
|---|---|
| Definition | - |
>habu1_s3970_g13011.t1 cctcttcagagcctgcagcgcctcccttccgaggaacctcagatgtcgcgcctttattagcctcggctccattgaggaag agccccttccttttgactgagcaattctcccgcaagaagcaaagcgaacggatcagacaacggggcgatgatgctgggat tcctggggtccgcgctgcctttcttgttcttggtccctctttcggtatttatgctagtgccgtatatcaggaagtatttt ggaggaagggtgtgcaagtctacagcacaactgaatggaaaaattgtagtgatcacaggagccaacactggtatagggaa ggaaaccgcgcgagaccttgcaagaagaggtgcgaaagtcatccttgcttgcagagatatggcaaaagcagaaaaggcag cccatgaaatccggatcaagacgggaaaccaaggggttatagcaaaaaaattagacttggcagacaccaaatctatcaga gaatttgccagtaatttcttgaaagaggagaaagaactccacatactcatcaacaatgcaggtgttatgatgtgccccta ttcaaagacagctgatggttttgagatgcattttggagtcaaccatcttgatctggataatttgccactattgaagaaag ttatgagagaacatcggaccatttgttcatcagctgaagcacaggcaggtcacacagcaatctcaaagcagcaattccaa gtatatgcacaggtctacaagggtgaaaggttctacttccggggcctggcatactctcatagcaagctggccaatattct tttctcacgggaattggctagacatctgcaaggtactggtgtcactgtgaatgctctgcatccaggtacagttttgtctg aacttgttcgtcattcctttacactaaaagttttgtggaacatattttctatcttcttgaggacaccttggcaaggagcc cagaccagcatatattgtgcggtgacagaggaactggagacagtcagtggaatgtatttcagtgattgtaaaccagcaaa tgtgtcatctcaaggacgtaaggatgaaacagcaaagaagctttggaatgtgagttgtgaactccttgatatccagtgga attgacctgcaaaggccagctacacctgaatcccatattttgtatacaagactatggaaaagtgttgctttcatgtaatt ttcatagttgataggacatgtccatttttaataaaagtgttcatctcagcttttccattaaaatagaagctcaagcaatt gttt |
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| Transcript ID | habu1_s3970_g13011.t2 |
| Definition | - |
>habu1_s3970_g13011.t2 cctcttcagagcctgcagcgcctcccttccgaggaacctcagatgtcgcgcctttattagcctcggctccattgaggaag agccccttccttttgactgagcaattctcccgcaagaagcaaagcgaacggatcagacaacggggcgatgatgctgggat tcctggggtccgcgctgcctttcttgttcttggtccctctttcggtatttatgctagtgccgtatatcaggaagtatttt ggaggaagggtgtgcaagtctacagcacaactgaatggaaaaattgtagtgatcacaggagccaacactggtatagggaa ggaaaccgcgcgagaccttgcaagaagaggtgcgaaagtcatccttgcttgcagagatatggcaaaagcagaaaaggcag cccatgaaatccggatcaagacgggaaaccaaggggttatagcaaaaaaattagacttggcagacaccaaatctatcaga gaatttgccagtaatttcttgaaagaggagaaagaactccacatactcatcaacaatgcaggtgttatgatgtgccccta ttcaaagacagctgatggttttgagatgcattttggagtcaaccatcttggacattttcttttaacgttcctgctaatag agcgtctgaaacaaagtgcaccagctcgtattataaatgtggcttcagtggctcatcatatggggagcattcatttcaat aatctccaaggtgaaaggttctacttccggggcctggcatactctcatagcaagctggccaatattcttttctcacggga attggctagacatctgcaaggtactggtgtcactgtgaatgctctgcatccaggtacagttttgtctgaacttgttcgtc attcctttacactaaaagttttgtggaacatattttctatcttcttgaggacaccttggcaaggagcccagaccagcata tattgtgcggtgacagaggaactggagacagtcagtggaatgtatttcagtgattgtaaaccagcaaatgtgtcatctca aggacgtaaggatgaaacagcaaagaagctttggaatgtgagttgtgaactccttgatatccagtggaattgacctgcaa aggccagctacacctgaatcccatattttgtatacaagactatggaaaagtgttgctttcatgtaattttcatagttgat aggacatgtccatttttaataaaagtgttcatctcagcttttccattaaaatagaagctcaagcaattgttt |
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Protein
| Protein ID | habu1_s3970_g13011.t1 |
|---|---|
| Definition | - |
>habu1_s3970_g13011.t1 MMLGFLGSALPFLFLVPLSVFMLVPYIRKYFGGRVCKSTAQLNGKIVVITGANTGIGKETARDLARRGAKVILACRDMAK AEKAAHEIRIKTGNQGVIAKKLDLADTKSIREFASNFLKEEKELHILINNAGVMMCPYSKTADGFEMHFGVNHLDLDNLP LLKKVMREHRTICSSAEAQAGHTAISKQQFQVYAQVYKGERFYFRGLAYSHSKLANILFSRELARHLQGTGVTVNALHPG TVLSELVRHSFTLKVLWNIFSIFLRTPWQGAQTSIYCAVTEELETVSGMYFSDCKPANVSSQGRKDETAKKLWNVSCELL DIQWN |
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| Protein ID | habu1_s3970_g13011.t2 |
| Definition | - |
>habu1_s3970_g13011.t2 MMLGFLGSALPFLFLVPLSVFMLVPYIRKYFGGRVCKSTAQLNGKIVVITGANTGIGKETARDLARRGAKVILACRDMAK AEKAAHEIRIKTGNQGVIAKKLDLADTKSIREFASNFLKEEKELHILINNAGVMMCPYSKTADGFEMHFGVNHLGHFLLT FLLIERLKQSAPARIINVASVAHHMGSIHFNNLQGERFYFRGLAYSHSKLANILFSRELARHLQGTGVTVNALHPGTVLS ELVRHSFTLKVLWNIFSIFLRTPWQGAQTSIYCAVTEELETVSGMYFSDCKPANVSSQGRKDETAKKLWNVSCELLDIQW N |
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