Gene
| Gene Model ID | habu1_s3970_g13012 |
|---|---|
| Locus | habu1_scaffold3970 : 510576 ... 521888 : + |
| To GenomeBrowser | habu1_scaffold3970:510576..521888 |
| Genes list of scaffold | habu1_scaffold3970 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| vesicle transport through interaction with t-snares homolog 1b isoform x1 | GO:0000149 GO:0005484 GO:0005765 GO:0005789 GO:0005794 GO:0006623 GO:0006888 GO:0006891 GO:0006896 GO:0012507 GO:0031201 GO:0031902 GO:0042147 GO:0048280 GO:0048471 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3970_g13012.t1 | 1 | 1 | V-SNARE | 32 | 109 | 3.1e-16 | 59.3 | 2.9e-19 | 3.1e-16 | 59.3 |
| habu1_s3970_g13012.t1 | 1 | 1 | V-SNARE_C | 150 | 214 | 7.5e-18 | 64.3 | 7.1e-21 | 7.5e-18 | 64.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3970_g13012.t1 | gi|602673467|ref|XP_007442231.1| | PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B isoform X1 [Python bivittatus] | 0.0 |
| habu1_s3970_g13012.t1 | gi|602673471|ref|XP_007442233.1| | PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B isoform X3 [Python bivittatus] | 0.0 |
| habu1_s3970_g13012.t1 | gi|327280356|ref|XP_003224918.1| | PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B [Anolis carolinensis] | 0.0 |
| habu1_s3970_g13012.t1 | gi|602673469|ref|XP_007442232.1| | PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B isoform X2 [Python bivittatus] | 0.0 |
| habu1_s3970_g13012.t1 | gi|557276668|ref|XP_006021460.1| | PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B isoform X2 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.6 |
| Venom grand-1 | 4.9 |
| Pit, infrared sensing | 6.9 |
| Nose | 7.8 |
| Brain-1 | 5.5 |
| Eye | 6.4 |
| fetal fibroblast | 14.8 |
| venom gland-2 | 9.0 |
| Brain-2 | 5.6 |
| Spleen | 6.5 |
| Lung | 9.9 |
| Liver | 14.4 |
| Kidney | 13.1 |
| Pancreas | 10.1 |
| Small intestine | 8.7 |
| Large intestine | 6.7 |
| Stomach | 8.1 |
| heart | 8.6 |
| ovary | 34.5 |
| cheek muscle | 10.5 |
Transcript
| Transcript ID | habu1_s3970_g13012.t1 |
|---|---|
| Definition | - |
>habu1_s3970_g13012.t1 ggtggaggatggtttctaggcggtagtcagcccggtgaagcgtcggatggaaaaaaagctgctcgctcccgactttcgtg ggatggcggaccgcggcgtcctctcctcggagcatctggagcggctgcacgagatttttcgcggcctccatggagagttg caaagcgccccggagaggctgcgcgggagcctggcggttgaggagaaaaaaaagttaatacgagagtttgatgaaaaact aaaagaggcaaatgaaacgttaagggaaatggaagaagaactgaaatatgccccagtgtccttccgcaatcaaatgatga ttaaaattcgaacttacaaaggagatcttagcacatttcataggaaaatgaaaagtacggatttgggagtacctccaagt gcacgtgggaattcaaaatttggcatcttctctacggaaaatgagcagagaactcagatgcagtctcagagggtgttact gcttcagggaacagaaagcttgaatcgagccactcagagcttggaccggacacaccaaattgctgcagaaactgatcaaa ttggtagtgacatcattgaagaactaggtgggcagcgtgagcagctggaacgcaccaaaggcagattagtaaacacaaat gaaaatttaagcagaagtcggaagatcctacgttccatgtcgagaaggcttatgacaaataaattgttactctctgtcat catcatcctggaggtaattatcctgggaagtcttgtctactataagttcttcacctaagcctcgaagaaatgcagttttt ctgctttgctgtcttcaatccactatatggacattcctgggcaatagctgtgacatagattgaaaagatggattgtattt actgcatttaaaatacagtgctggcttgttgtcagtcttgacatgtccttctgagaagggtgcagtgctactgggaggag atgaactacatctgcaatataacacgatagtcatgtatactga |
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Protein
| Protein ID | habu1_s3970_g13012.t1 |
|---|---|
| Definition | - |
>habu1_s3970_g13012.t1 MEKKLLAPDFRGMADRGVLSSEHLERLHEIFRGLHGELQSAPERLRGSLAVEEKKKLIREFDEKLKEANETLREMEEELK YAPVSFRNQMMIKIRTYKGDLSTFHRKMKSTDLGVPPSARGNSKFGIFSTENEQRTQMQSQRVLLLQGTESLNRATQSLD RTHQIAAETDQIGSDIIEELGGQREQLERTKGRLVNTNENLSRSRKILRSMSRRLMTNKLLLSVIIILEVIILGSLVYYK FFT |
|