Gene
| Gene Model ID | habu1_s399842_g24545 |
|---|---|
| Locus | habu1_scaffold399842 : 109470 ... 138435 : - |
| To GenomeBrowser | habu1_scaffold399842:109470..138435 |
| Genes list of scaffold | habu1_scaffold399842 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lysine-specific demethylase 2b isoform x2 | GO:0005634 GO:0021591 GO:0021915 GO:0030900 GO:0030902 GO:0044238 GO:0044260 GO:0044763 GO:0046872 GO:0048523 GO:0048598 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s399842_g24545.t1 | 1 | 1 | zf-CXXC | 596 | 640 | 1.4e-14 | 53.5 | 6.7e-18 | 1.4e-14 | 53.5 |
| habu1_s399842_g24545.t1 | 1 | 1 | F-box | 973 | 1011 | 1.2e-11 | 43.9 | 4.3e-13 | 9.0e-10 | 37.9 |
| habu1_s399842_g24545.t1 | 1 | 1 | F-box-like | 973 | 1012 | 8.1e-08 | 31.8 | 9.0e-11 | 1.9e-07 | 30.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s399842_g24545.t1 | gi|602655093|ref|XP_007433317.1| | PREDICTED: lysine-specific demethylase 2B isoform X2 [Python bivittatus] | 0.0 |
| habu1_s399842_g24545.t1 | gi|602655091|ref|XP_007433316.1| | PREDICTED: lysine-specific demethylase 2B isoform X1 [Python bivittatus] | 0.0 |
| habu1_s399842_g24545.t1 | gi|697444114|ref|XP_009664894.1| | PREDICTED: lysine-specific demethylase 2B isoform X7 [Struthio camelus australis] | 0.0 |
| habu1_s399842_g24545.t1 | gi|564268189|ref|XP_006272891.1| | PREDICTED: lysine-specific demethylase 2B isoform X2 [Alligator mississippiensis] | 0.0 |
| habu1_s399842_g24545.t1 | gi|564268187|ref|XP_006272890.1| | PREDICTED: lysine-specific demethylase 2B isoform X1 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.5 |
| Venom grand-1 | 6.0 |
| Pit, infrared sensing | 5.6 |
| Nose | 5.6 |
| Brain-1 | 7.5 |
| Eye | 6.4 |
| fetal fibroblast | 3.6 |
| venom gland-2 | 5.4 |
| Brain-2 | 5.8 |
| Spleen | 6.6 |
| Lung | 7.0 |
| Liver | 5.7 |
| Kidney | 4.8 |
| Pancreas | 6.0 |
| Small intestine | 6.0 |
| Large intestine | 7.7 |
| Stomach | 6.3 |
| heart | 4.4 |
| ovary | 13.8 |
| cheek muscle | 4.3 |
Transcript
| Transcript ID | habu1_s399842_g24545.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24545.t1 ggccgcgctccatcctcccgccccacgcatcacccccgaaagatgcaagtcccaactcggcgctgcatcggccggcgcct ctacgacgagaacgaggacctgtccgacgtggaggagatcgtcagcgtgcgcggcttcgacctggaggagaagctgagga gccgcagctaccgcggggacttcgtgcggcccatggacggccaagatttcaattttgaatacgtgcagcgggaagcgctg aaagtccctctcatcttccgaagtaaggctggactgggaattaaaatgcctgatccagacttcactgcccaagatgctaa aatgcttgtggggagccgacggatcgtggatgtagtggatgtgaacacccaaaaaggcattgaaatgagcatggctcaat ttgtgcggtactacgaaacccctgaggtggagcgcgagaagctgtacaacatgatcagcctggaattcagccacaccaaa ctggccaatattgtcaagcgtcccaatgtggtggatttagtagactgggtggacaacatgtggccgcggcatttaaagga aaggcagaccgagtccacaaatgccattttggagatgaaatatcccaaagtgaaaaagtactgcttgatgagcgtgaaag gatgcttcaccgatttccacattgatttcggaggcacttcggtgtggtatcacgttttccgtggaggaaagatcttttgg ctgattcctccaacattgcagaacctagaactttacgaggaatgggttgtctctgggaagcaaagtgatatttttctggg ggaccgcgtggagctgtgccaaagaatcgaactgaaacaaggctacactttcttcattccttcagggtggatacatgcgg tttacaccccagttgattccttggtgtttggtggaaatatcttgcatagctttaacgttcccatgcagcttcgcattcat gaaattgaggacagaacaaggccaccttcctggatcagaggagaagactactctgaacagaaagttgcttccaactatca taattcaaaaactggccgaggggtggaaagaggcatcttcctatttgtacaagccaagttccgctacccattttactatg agatgtgttggtatgttttggagagatacgtgttctgtctaacccagcgctctcatttcagcagggagtatctacaagaa tcaatgttaattgataccacgaggaaacgtagcttggacagcttctcatccgattcctggggagacatggatgaggattt gtgcgatgttggtccccaggaagacaaggacaaccacccagaaaaagtccccaagatctcatccgacgtcccctcttctc ctaacagcacacactcggaagggaaggagatgttggggaagaaaccaaaatctcgcttcttcaaaaggactctgtccaac gagtcggaggaaagtataaagtcagccacggtggactattccaaaacccccaccgggtctcctgccacggaggtccccgc caagtggactcacttgaccgaatttgagctgaaaggcttgaaggccctggtggaaaaactagaatctcttccggagaata agaaatgcgtccccgaaggcattgaagaccctcaagctctcttggaagatatgaagaacatcctgaaggaacatgcagag gatgaccagaatctggccatttctgggatccccgtggtatcctggcctaagaaaaacgcaaagaaccggaccgttggacg tccaaaggggaagttgggtccttcctcggccgtgaagcttgcagcgaatcggacgactgcaggcgcgcgccggagaagga cgcgatgtcgcaagtgcgaggcctgcttgaggacagagtgtggcgaatgtcacttctgcaaggacatgaagaagtttggg gggcctggccggatgaaacagtcctgcattatgaggcagtgcatcgcgccggtgctgcctcacaccgcggtgtgcttggt gtgtggagaagctggcaaggaagacacggtggaggaagaagagagcaaatttaatctgatgcttatggagtgctcaatct gcaacgaaatcatccacccggggtgcctcaaggagcagaagatgaaccgggagaacaaggaagccgtccccgaggtcccc aagcggaaagtcgagtgtgaggaatcgccccgcaagaaatccgacgagcgccctccgaagcccccgctggaccctctctt gaggaggaagtcggaggaagcccacctgcgccgcaagcggaaattcgagaagccccaagagccggcgatgaggaagcggc taaaactgggcaaagaagagaagctgttcaggaaaaagaggcgctcctggaagacccccgacgaccgggcggccgccctc aagcccctgcggcggttcaagcaagagccgggcgaggccttcccggaggagcctccgaaaaccaaggagagcgaccagtc gcgttccagctcacccacggcggggcccagctcggaaggcgccgagtcccgggagaagaagaaattcaagatccgccgga aagcacgcctgcccaacaaggagctgagcaaggagctgagcaaggagctgaaccaggagatccagaagacggagaacagc ctggccaacgagaaccaccagccgcccatcaagtcggagccggagagcgagaacgaggagcccaagcacggcctcggcct ggagcggccgcatccgctcagcaagggcttcaacgggacgccgcgggaactccgccaccagctcctctccagcctccgca gcagcagcaccacccccagggccgttgcccgccccccgccttccctctcgcctcccaagtgcatgcagatggagcgacac gtggtccggccgccccccatcagccccccaccggactcgctcctgctggacgacggagcggcccacgtgatgcagaggga ggtgtggatggccgtctttggctgcctcagccccggggagctctgcatctgcatgagggtgtgccggacctggaatcggt ggtgctgtgacaaaagactgtggaccaaaatagacctcaaccattgtaaatccatcactcccctgatgctgagcggcatc atcagaagacagccggccacgctagacctgagctggacaaatatatcgaaaaagcagctgagctggctgatcacccgcct tccaggtctccgggatctgcttttggctgggtgctcgtggattgccgtgtccgctctctgcagctccagttgtccccttc ttcgaattctggacagccagtgggtggaaggcctgaaggatgctcagatgcgagaccttttgtcaccgccaactgacaac cggccaggccagattgacaaccgaagcaaactgcgcaacatcacagatctccgcctgtccggtttggacatcacggacgc ttctctgcgtctgattatccggcacatgcctctcctgtccagactcaacctcagctactgcaatcacgtgacggaccagt ccatcaacttgctaacggcagtggggaccaccacgcgggactccctaaccgaggttattttgaaagactgcaacagggtg acggatcagtgcctgtcgtacttcaagcgctgcggaagcatctgccacatcgacctccgttactgcaagcaggtcagccg ggaaggctgcgagcgcttcatcgccgagatgtcggtcagtgtccagttcagccaggcagaggagaagctgctgaagaagc tgagctagtattgacaaggacacggttttcaagggaggcgaagaagcaggggggaaaaaaaggacagaaggaagttggag gggtgtttcccccactcacccacccgacacgcggcgtggatgttgtgcgaacagatccgactgcgcgggaatgtacggca ggcagccaggttaggaatctggcgctctgggaggccgtcgatgttccttcctgggattttcacgtgccgagaaagatacg gacgggccgactcagaactgtggccggagcgcctgtacatttggtttaagactttctgcaggcctccgaagcgaaacgct cgttctgccctggtgaaggtgggccgtccccctgcctcttcttgccttcgggactggttggtttgttttttcctccccgt tatatgttgaccttatgcaaaactatttttgtacaaatccctttaaaaagttatttatgcaaagttctcggatgcttttc tggcgttttgacttgggtttcgcgttgccaaatgtttctggagtgggaggagcagacttcggaaaagagacacgactgat cggacggatattccccacttttgaaggggtggagggggaaaataggggcatactttatgatgggggagggggaagaaata gcatgttttgtataccactttgtatactctagcaacacagtaaggcatgttgtggaaaagagttgtacagatgaaggatg aaagtgttattaaattctccccgtataaagtccattttccccttaattttg |
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Protein
| Protein ID | habu1_s399842_g24545.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24545.t1 MQVPTRRCIGRRLYDENEDLSDVEEIVSVRGFDLEEKLRSRSYRGDFVRPMDGQDFNFEYVQREALKVPLIFRSKAGLGI KMPDPDFTAQDAKMLVGSRRIVDVVDVNTQKGIEMSMAQFVRYYETPEVEREKLYNMISLEFSHTKLANIVKRPNVVDLV DWVDNMWPRHLKERQTESTNAILEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNLELYEE WVVSGKQSDIFLGDRVELCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIHEIEDRTRPPSWIRG EDYSEQKVASNYHNSKTGRGVERGIFLFVQAKFRYPFYYEMCWYVLERYVFCLTQRSHFSREYLQESMLIDTTRKRSLDS FSSDSWGDMDEDLCDVGPQEDKDNHPEKVPKISSDVPSSPNSTHSEGKEMLGKKPKSRFFKRTLSNESEESIKSATVDYS KTPTGSPATEVPAKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHAEDDQNLAISGIPVVS WPKKNAKNRTVGRPKGKLGPSSAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQC IAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHPGCLKEQKMNRENKEAVPEVPKRKVECEESPRKKS DERPPKPPLDPLLRRKSEEAHLRRKRKFEKPQEPAMRKRLKLGKEEKLFRKKRRSWKTPDDRAAALKPLRRFKQEPGEAF PEEPPKTKESDQSRSSSPTAGPSSEGAESREKKKFKIRRKARLPNKELSKELSKELNQEIQKTENSLANENHQPPIKSEP ESENEEPKHGLGLERPHPLSKGFNGTPRELRHQLLSSLRSSSTTPRAVARPPPSLSPPKCMQMERHVVRPPPISPPPDSL LLDDGAAHVMQREVWMAVFGCLSPGELCICMRVCRTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPATLDLSWTN ISKKQLSWLITRLPGLRDLLLAGCSWIAVSALCSSSCPLLRILDSQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNI TDLRLSGLDITDASLRLIIRHMPLLSRLNLSYCNHVTDQSINLLTAVGTTTRDSLTEVILKDCNRVTDQCLSYFKRCGSI CHIDLRYCKQVSREGCERFIAEMSVSVQFSQAEEKLLKKLS |
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