Gene
| Gene Model ID | habu1_s399842_g24570 |
|---|---|
| Locus | habu1_scaffold399842 : 471933 ... 488017 : - |
| To GenomeBrowser | habu1_scaffold399842:471933..488017 |
| Genes list of scaffold | habu1_scaffold399842 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| myosin regulatory light chain ventricular cardiac muscle isoform | GO:0003785 GO:0005509 GO:0009791 GO:0015629 GO:0030016 GO:0030308 GO:0042694 GO:0048747 GO:0055003 GO:0055010 GO:0060048 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s399842_g24570.t2 | 1 | 1 | EF-hand_1 | 25 | 52 | 3.9e-11 | 41.4 | 2.0e-09 | 5.0e-06 | 25.4 |
| habu1_s399842_g24570.t2 | 1 | 1 | EF-hand_6 | 25 | 52 | 3.7e-08 | 32.5 | 1.1e-09 | 2.8e-06 | 26.7 |
| habu1_s399842_g24570.t2 | 1 | 1 | EF-hand_7 | 27 | 148 | 4.6e-09 | 36.2 | 3.0e-10 | 7.4e-07 | 29.2 |
| habu1_s399842_g24570.t2 | 2 | 1 | EF-hand_8 | 38 | 70 | 2.5e-09 | 36.6 | 9.6e-07 | 0.0024 | 17.4 |
| habu1_s399842_g24570.t2 | 2 | 2 | EF-hand_8 | 119 | 149 | 2.5e-09 | 36.6 | 2.7e-06 | 0.0066 | 16.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s399842_g24570.t2 | gi|543361870|ref|XP_005524346.1| | PREDICTED: myosin regulatory light chain 2A, cardiac muscle isoform-like [Pseudopodoces humilis] | 0.0 |
| habu1_s399842_g24570.t2 | gi|429535826|ref|NP_001258858.1| | myosin regulatory light chain 2A, cardiac muscle isoform [Gallus gallus] | 0.0 |
| habu1_s399842_g24570.t2 | gi|704275976|ref|XP_010155607.1| | PREDICTED: myosin regulatory light chain 2A, cardiac muscle isoform [Eurypyga helias] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.6 |
| Venom grand-1 | 5.7 |
| Pit, infrared sensing | 24.1 |
| Nose | 0.2 |
| Brain-1 | 0.6 |
| Eye | 30.3 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.4 |
| Brain-2 | 0.6 |
| Spleen | 0.2 |
| Lung | 0.0 |
| Liver | 0.1 |
| Kidney | 0.3 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.6 |
| Stomach | 0.3 |
| heart | 0.2 |
| ovary | 0.2 |
| cheek muscle | 42.8 |
Transcript
| Transcript ID | habu1_s399842_g24570.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24570.t1 gggcctcctgccagtccagccaccacaagagacgatctctgcttttgcacgaaaatggagtctaatcaggcctagctgtt aaatcaggtctaccttcacccctccacgtgtgcacccacgtgcacacacggagacctagagaaccccccaggctctcaca cagcagatcagaaggtggcagccaggagcccaacggggtaatcaaaaagcagggcgctctctgttctgtattttgggttt gattggcaggaagtttgcaactggctctgctcgccaaagacgccgtttcctggggcttgctatttcaggagagcaaccga gacttgtggaagattgctaaggagcaggctcacccccagctcagtgtgtctgctccttctgcccccaaatacctgaggac caaaataaattccgagagacagcagcttcttccaggaaatgaggatcaggaatggtggacaagccggacttggctgttat tacctctctctggagaagccacagatggccgctagcaaggggaacctgttccacgagccaactctcaggaatacgtttcc caggattcaaggaaaaaaacggagattaaaccaggccacatcagaagcattgtgaagagattcccaatttagatcaattc tttccaccatcgtggtttaaatggtgaatgctcgacgtgacaagaggaaagaaaaataggatctctggatgcaaacagac cagtggggcgtcactacaaaagcatcgtcggagatgcgagggagtactctccaggactgactcggcttccccaagagcaa cgggggcacccaccaaaggaaccgtctccgaacagcaccctgagctgcacaatttggtcttagaaatggcacccaagaaa gctaagaagaggtcagattcgaatgtcttctccatgtttgaacaggcacagatccaggagtttaaggaggctttcaccat catggatcagaaccgcgatggtttcattgacaaagcagatctgagagatacatttgcagcactagggcgtctgaatgtga aaaatgaagagcttgatgacatgatcaaagaagctcctggaccaattaacttcaccgtgttcttgtcaatgtttggagaa aagcttaaaggagcagatccagaggaaaccattctaagtgcatttaaagtctttgatccagaaagcaaaggcttaaaggc aagctacattaaagagatgctcatgacacaaggagaacggttttcaaaggaagaggtagaccaaatgtttgcagccttcc ctccagatgtgaccggcaaccttgactataagaatttggtgcacatcatcacacatggagaagaaaaagattaagaaatg gtggggagccactcgagtcctatatgcccagggacattcttagagctttgcttttttttattggaaaaaatgaggtgcca gaaacacatccctgaatcctctgtggctaatagaacctgccaaaccagggaaatggctcgactctgcaacagccacgcag taaaaatataacaacagcaaaatcaa |
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| Transcript ID | habu1_s399842_g24570.t2 |
| Definition | - |
>habu1_s399842_g24570.t2 atcctctactttctgttatctttaaatcttgcaaatgaaaatggacggggtgatctgtgtacaggaccaccagatcactg attcactggctcccccccgctgaaaagccactgctgcagtctgtcaaatcagctacatggcttggcctgaataagccatc cggaaatgtattcttgtccctcctttgtcttgcatgctcggctcccctttctatttaaatcctttttaaaatgccttggc gcttctcctacccttgagcccctctgctccagaagagctgggatgttctccctgtggcttttcttcctttactggagagg tgaccctgcccgtgtcctattttctttctctgactttctttccttccctttctgctggctggcaggaaggcaaagcccta cacttgatagtctagtctagaacctcaggatctcctcggggtctcccatccatccaagtactctccaggactgactcggc ttccccaagagcaacgggggcacccaccaaaggaaccgtctccgaacagcaccctgagctgcacaatttggtcttagaaa tggcacccaagaaagctaagaagaggtcagattcgaatgtcttctccatgtttgaacaggcacagatccaggagtttaag gaggctttcaccatcatggatcagaaccgcgatggtttcattgacaaagcagatctgagagatacatttgcagcactagg gcgtctgaatgtgaaaaatgaagagcttgatgacatgatcaaagaagctcctggaccaattaacttcaccgtgttcttgt caatgtttggagaaaagcttaaaggagcagatccagaggaaaccattctaagtgcatttaaagtctttgatccagaaagc aaaggcttaaaggcaagctacattaaagagatgctcatgacacaaggagaacggttttcaaaggaagaggtagaccaaat gtttgcagccttccctccagatgtgaccggcaaccttgactataagaatttggtgcacatcatcacacatggagaagaaa aagattaagaaatggtggggagccactcgagtcctatatgcccagggacattcttagagctttgcttttttttattggaa aaaatgaggtgccagaaacacatccctgaatcctctgtggctaatagaacctgccaaaccagggaaatggctcgactctg caacagccacgcagtaaaaatataacaacagcaaaatcaa |
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Protein
| Protein ID | habu1_s399842_g24570.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24570.t1 MLDVTRGKKNRISGCKQTSGASLQKHRRRCEGVLSRTDSASPRATGAPTKGTVSEQHPELHNLVLEMAPKKAKKRSDSNV FSMFEQAQIQEFKEAFTIMDQNRDGFIDKADLRDTFAALGRLNVKNEELDDMIKEAPGPINFTVFLSMFGEKLKGADPEE TILSAFKVFDPESKGLKASYIKEMLMTQGERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD |
|
| Protein ID | habu1_s399842_g24570.t2 |
| Definition | - |
>habu1_s399842_g24570.t2 MAPKKAKKRSDSNVFSMFEQAQIQEFKEAFTIMDQNRDGFIDKADLRDTFAALGRLNVKNEELDDMIKEAPGPINFTVFL SMFGEKLKGADPEETILSAFKVFDPESKGLKASYIKEMLMTQGERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEE KD |
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