Gene
| Gene Model ID | habu1_s399842_g24573 |
|---|---|
| Locus | habu1_scaffold399842 : 560938 ... 576640 : + |
| To GenomeBrowser | habu1_scaffold399842:560938..576640 |
| Genes list of scaffold | habu1_scaffold399842 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sh2b adapter protein 3 isoform x2 | GO:0044767 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s399842_g24573.t1 | 1 | 1 | Phe_ZIP | 16 | 71 | 1.3e-21 | 76.6 | 5.0e-25 | 2.5e-21 | 75.7 |
| habu1_s399842_g24573.t1 | 1 | 1 | PH | 205 | 309 | 5.4e-07 | 29.7 | 1.8e-10 | 9.0e-07 | 29.0 |
| habu1_s399842_g24573.t1 | 1 | 1 | SH2 | 368 | 445 | 9.0e-15 | 54.2 | 4.0e-18 | 2.0e-14 | 53.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s399842_g24573.t1 | gi|637349774|ref|XP_008118087.1| | PREDICTED: SH2B adapter protein 3 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s399842_g24573.t1 | gi|637349766|ref|XP_008118086.1| | PREDICTED: SH2B adapter protein 3 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s399842_g24573.t1 | gi|591367044|ref|XP_007058374.1| | PREDICTED: SH2B adapter protein 3 [Chelonia mydas] | 0.0 |
| habu1_s399842_g24573.t1 | gi|530617863|ref|XP_005298659.1| | PREDICTED: SH2B adapter protein 3 [Chrysemys picta bellii] | 0.0 |
| habu1_s399842_g24573.t1 | gi|557259101|ref|XP_006015241.1| | PREDICTED: SH2B adapter protein 3 isoform X2 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.8 |
| Venom grand-1 | 3.0 |
| Pit, infrared sensing | 6.1 |
| Nose | 2.8 |
| Brain-1 | 1.5 |
| Eye | 2.2 |
| fetal fibroblast | 12.1 |
| venom gland-2 | 2.0 |
| Brain-2 | 1.0 |
| Spleen | 5.3 |
| Lung | 9.9 |
| Liver | 1.9 |
| Kidney | 4.8 |
| Pancreas | 2.3 |
| Small intestine | 6.6 |
| Large intestine | 3.4 |
| Stomach | 3.8 |
| heart | 3.8 |
| ovary | 8.7 |
| cheek muscle | 19.7 |
Transcript
| Transcript ID | habu1_s399842_g24573.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24573.t1 tttgggagacggtcctaggagatcctgggagaggtcctcaggatggcttatgcactttgatgaagttgggccgaggagat taggaccctggtgcacgtccaagaattttctgcagagctaaccagttataatactagtggcatctttgtagctcaaggtt gaatgatggggtccttggcactctctgaccttgaaccccaggaaatctccagacttggccatgaatggacacgctgtccc atcaggcgactccggataccccggcgggtggaacgacttctgcaagcagcacgctatcaccaccgccagggagctggcca gggagtacctacactttgtcagtgagaacccccagcatgaagttttggccgctgagaacttctcccttcagtttgcggac ctcttccagcaatatttccgcaacgaggtgaaggatacaaatgctacggaccagcttcacatcctgcccttcagcagagt gcgagactaccgggacacaggccagaaacatggtgagggatcctcgggcacggttggggccaaggtcgaggtggaattgt cggaccaggtcaaccgggcctctgaggtccgctctggtggacttcccaagtcctggagttctgaagaactggcagcgccc acttctccattgggcatcaggagacatttttctctggaccggctacggaggagctggcgtagcttgttccgccggagatc cttggagtcgggccctggcgaaggggagatggcggacttggttttgagatctggccttgcccgaaagatcttcccgtgga ccatctccagggactgctccttacagatccagaaagaagggaacctgaaatacatgatggtgacggaggacagtgggact cgctggcagaaatgccggctagttttatacaaagaagggcctccggactgccagagttatgcgttggcgctgtttgatcc ccctaagagctccaggcccaaactccagtccccttgcttggcgatccaagagacccgggcgtgcactcggctggagatgc ccgaccacctccacacctttgtggtcaaggtaaacgcctccaccgaaataatattcgaggctggagatgagcagcagctg gccgcctggatagcggagattcagcagggcctccccagatcggaaggcggccaccttgagggcaccgcagaccctcgttc ggaggccggcacccccagccctgccaacagcagcaccgactccctgcaccaaggggccttgctctccaggccctccgagc agccggcccagaggatcgagcactacttgtccgccttcccctggttccacggccccatctcccgggtcaaggccgcccag ctggtccagctgcaaggcctggacggacacggcgtcttcctcatccggcagagcgaaagccgccggggggagtacgtgct gaccttcaacttccaaggaaaagccaagcacctgcggctttccctgacggagcggggccagtgccgagttcaacacctcc acttttcctccgtcctggacatgctgcaccacttccagcactgccccatccccctcgagtgtggcacggcctgcagcgtc cagctctcccggcacgtggtggtcgtcccccccctgcaagcctccggacacccagccaccttccccccgtccacccacgc ctgcacgccagacgtcagcttcctccagccaagtcccgccggctgtccccggacccgcctggccgacagccttcgccgcc actccgtggagcagatcttccacctggtgcccccacctgaagacctggctggtggcctccggcccggccccagcagcgcc tcccctggtccggccccttcgcccgccgcccgccggtgggacagtgactacgaggtggaggtgcagagccgggggcacct ccgggcggtcagcaaccagtacacctccctctgacacagctggcggagcccccccatggctctcgcccaggacgctggat ggccccgccaggaactgtcctcttccagctgcatttagtatttgggtggcaaggctgggcactggctccctttgggggga tgtgacttttccaccaggatcccctcggcctgcgtgtctcccccgtctctcatcggtttgcacgtcttcctttgcattt |
|
Protein
| Protein ID | habu1_s399842_g24573.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24573.t1 MNGHAVPSGDSGYPGGWNDFCKQHAITTARELAREYLHFVSENPQHEVLAAENFSLQFADLFQQYFRNEVKDTNATDQLH ILPFSRVRDYRDTGQKHGEGSSGTVGAKVEVELSDQVNRASEVRSGGLPKSWSSEELAAPTSPLGIRRHFSLDRLRRSWR SLFRRRSLESGPGEGEMADLVLRSGLARKIFPWTISRDCSLQIQKEGNLKYMMVTEDSGTRWQKCRLVLYKEGPPDCQSY ALALFDPPKSSRPKLQSPCLAIQETRACTRLEMPDHLHTFVVKVNASTEIIFEAGDEQQLAAWIAEIQQGLPRSEGGHLE GTADPRSEAGTPSPANSSTDSLHQGALLSRPSEQPAQRIEHYLSAFPWFHGPISRVKAAQLVQLQGLDGHGVFLIRQSES RRGEYVLTFNFQGKAKHLRLSLTERGQCRVQHLHFSSVLDMLHHFQHCPIPLECGTACSVQLSRHVVVVPPLQASGHPAT FPPSTHACTPDVSFLQPSPAGCPRTRLADSLRRHSVEQIFHLVPPPEDLAGGLRPGPSSASPGPAPSPAARRWDSDYEVE VQSRGHLRAVSNQYTSL |
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