Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s399842_g24579
Locus habu1_scaffold399842 : 651157 ... 659747 : -
To GenomeBrowser habu1_scaffold399842:651157..659747
Genes list of scaffold habu1_scaffold399842

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s399842_g24579.t1 gi|602655858|ref|XP_007433670.1| PREDICTED: transmembrane protein 116 [Python bivittatus] 0.0
habu1_s399842_g24579.t1 gi|637335877|ref|XP_008115540.1| PREDICTED: transmembrane protein 116 [Anolis carolinensis] 0.0
habu1_s399842_g24579.t1 gi|558156360|ref|XP_006121835.1| PREDICTED: transmembrane protein 116 isoform X1 [Pelodiscus sinensis] 0.0
habu1_s399842_g24579.t1 gi|530617837|ref|XP_005298646.1| PREDICTED: transmembrane protein 116 isoform X1 [Chrysemys picta bellii] 0.0
habu1_s399842_g24579.t1 gi|690427679|ref|XP_009332682.1| PREDICTED: transmembrane protein 116 isoform X1 [Pygoscelis adeliae] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 2.0
Venom grand-1 1.1
Pit, infrared sensing 3.4
Nose 2.0
Brain-1 1.2
Eye 1.6
fetal fibroblast 0.4
venom gland-2 0.6
Brain-2 0.7
Spleen 2.5
Lung 21.7
Liver 1.2
Kidney 0.6
Pancreas 2.6
Small intestine 0.5
Large intestine 1.9
Stomach 10.8
heart 1.6
ovary 25.8
cheek muscle 1.3

Transcript
Transcript IDhabu1_s399842_g24579.t1
Definition-
>habu1_s399842_g24579.t1
ggtcgctgctgcctgcagctccttgcttggctggccagcatgggctcctttgccgctggggctgctgttcaggagctcct
gcagccccaggatttggagagggctcagtttttcgccatcatccactggatccaagctgtcatggctactttgagcatca
tggggtcgagctcaattatcggctacaccatattccagaacaccgccagatcccccgaggtgcggcctcttgtctacctg
agcctctccgatctctttctggggttgtgctggctcacgggggcccttctgtatagcagagaaacatcccacccaagtgg
agaaggcaacacttgctacaacttgcaagccaccggacagatcttctatgtcgcctcttttctgtacacaattaattaca
cttggcaactttacatggatttgaaagagaaattcaaccagcacttacacagccagaggccgcagatgttgagctattca
aatcacctgggccgaatagccatcatttcctctagtctcatcccggtcctcctgatggtgcccgttttgggactcggcaa
ctactttcagtgttctcagaacttcacctcagaacacgggtgcctcctgttgcacatgggaaacgtgctcagcaccagct
ctcagcaggtcacctgcgccgcgttgtgtttgtacagcactggagttttcctggtctcgtttgtagtcagcttccttgca
attctgagcttgctcatccgagccaggaccttgtacaagcggtttgtgaactcgatgggctacgtcggtgatcaacagtg
ggcgatgctgaaggtggtcgagcaagccgtgattctgtaccccgtggtatttttctgctgctgggggccagcctttatcc
ttgctatagtcaagctggcacatatggacaacgccagtgtttacatggccctttatattctagaggccctgactgcatct
tcccaggggttcctgaactgtatggtttacggctggactcagcacatgttccactgtgtgaaacgcaaggcttgccgtga
tgtcaacacccagacgcccctcctgcgttcccagaagaggttctatgccagcacactcccagcccgtatccagacagtgg
ctaagccctcctctccttcaacaatgacagtgttatgaacgggccacgaggctcttttctcagcaatgccagctagactg
tttagatcctgcacagaggaggttgaacccatggccctgaagctagctcattcacaacctctctgagaaaatatggctgt
caaaacgagtcagtggcagatgggtgaacttaaagagagagcttggaagaactttgagagaattaaagtgcaattgggca
agaagaaac

Protein
Protein IDhabu1_s399842_g24579.t1
Definition-
>habu1_s399842_g24579.t1
MGSFAAGAAVQELLQPQDLERAQFFAIIHWIQAVMATLSIMGSSSIIGYTIFQNTARSPEVRPLVYLSLSDLFLGLCWLT
GALLYSRETSHPSGEGNTCYNLQATGQIFYVASFLYTINYTWQLYMDLKEKFNQHLHSQRPQMLSYSNHLGRIAIISSSL
IPVLLMVPVLGLGNYFQCSQNFTSEHGCLLLHMGNVLSTSSQQVTCAALCLYSTGVFLVSFVVSFLAILSLLIRARTLYK
RFVNSMGYVGDQQWAMLKVVEQAVILYPVVFFCCWGPAFILAIVKLAHMDNASVYMALYILEALTASSQGFLNCMVYGWT
QHMFHCVKRKACRDVNTQTPLLRSQKRFYASTLPARIQTVAKPSSPSTMTVL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Chromosome
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495