Gene
| Gene Model ID | habu1_s399842_g24587 |
|---|---|
| Locus | habu1_scaffold399842 : 829741 ... 846057 : - |
| To GenomeBrowser | habu1_scaffold399842:829741..846057 |
| Genes list of scaffold | habu1_scaffold399842 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| chemokine-like receptor 1 | GO:0004950 GO:0005886 GO:0007187 GO:0010759 GO:0016021 GO:0032088 GO:0032695 GO:0045600 GO:0050848 GO:0070098 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s399842_g24587.t1 | 1 | 1 | 7TM_GPCR_Srsx | 137 | 375 | 6.8e-07 | 28.7 | 1.4e-10 | 1.1e-06 | 28.0 |
| habu1_s399842_g24587.t1 | 1 | 1 | 7tm_1 | 143 | 393 | 0.0 | 185.1 | 0.0 | 0.0 | 184.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s399842_g24587.t1 | gi|602655668|ref|XP_007433578.1| | PREDICTED: chemokine-like receptor 1 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s399842_g24587.t1 | gi|327280886|ref|XP_003225182.1| | PREDICTED: chemokine-like receptor 1 [Anolis carolinensis] | 0.0 |
| habu1_s399842_g24587.t1 | gi|700399003|ref|XP_009940278.1| | PREDICTED: chemokine-like receptor 1 [Opisthocomus hoazin] | 0.0 |
| habu1_s399842_g24587.t1 | gi|704172029|ref|XP_010132157.1| | PREDICTED: chemokine-like receptor 1 [Buceros rhinoceros silvestris] | 0.0 |
| habu1_s399842_g24587.t1 | gi|704474162|ref|XP_010071880.1| | PREDICTED: chemokine-like receptor 1 [Pterocles gutturalis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.9 |
| Venom grand-1 | 1.1 |
| Pit, infrared sensing | 2.3 |
| Nose | 1.2 |
| Brain-1 | 0.7 |
| Eye | 2.9 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.6 |
| Brain-2 | 0.6 |
| Spleen | 5.6 |
| Lung | 1.5 |
| Liver | 1.0 |
| Kidney | 0.3 |
| Pancreas | 0.7 |
| Small intestine | 1.3 |
| Large intestine | 2.5 |
| Stomach | 1.0 |
| heart | 1.7 |
| ovary | 1.6 |
| cheek muscle | 3.7 |
Transcript
| Transcript ID | habu1_s399842_g24587.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24587.t1 tcgtgcaaaatgctaaatcttagcttaattgttttaagacaatgttggggtagacaatctggaaatgaccttgggaccca taatccacagaaggttttggatgaggccatgggccctgggcgtaaatgcagctggttgtacaacaagggtgctgtgaaga gcatcagagatgaagagagaaaattggggtacattcagcaggttcgcatccagactggtggtcgtgaagacttccttgag ccgaaacatcttctgaaagggacgtttcctcaccagcaaagaaaagttcccgtaaggccgacacagctgaactcgcctcc ggctgttctttctccgtattcctgctttgagcctcgcttgttgatggtcatggaagaattggagaatattacgtattact ctgactactatatttacgagcacttcaaccctgttagagacacatatagcaaacccccccaaatagaccccctgaccatc gttcaagtggttgctgctctcatctacagcctcacctgcctcctgggtctattgggcaacggcttggtcatcgcaattat cttcaagatgaagaaatcggtcaccacaatctggttcctcaacctggcagctgccgacttcctgttcaatgtcttcctgc ccctgaacatcgcctacaccgccatgggcttccactgggttttcggcagagacatgtgcaaagtcagcactttgcttctc aacctcaacatgtgcaccagcgtgcttctcttgaccaccatcagtattgatcgttgcattttggtggtcttcccagtcca atcccaaaagcgtcggaccccgacaatcgcctggttgtcctgcatcctaatttgggtgcttggttttctaatgagctccc cttcccttgtttttcgagacaccacaaccacccatgaccgcatccgttgtttttacaacttctccttgtccagttctcca aatgacaccgccctcggcatccagagacataaaatggtaaccacctttcgcttcttggtggggtttatcatacccatgat tgttatcacagtatgttacattaccataatttttcggctgaagaagaaccgtctggccaaatccaagaagcccttgagaa ttattgtggccattatcaccaccttcttcctgtgttggtgcccgtaccacactctccacctcctggaaacggatcaccgc tcagttccagaaaacgtctttgagatcggcttgcccctggtcacggccatcgctgcttctaacagctgcatgaaccccat tctgtacgtcttcatgggccaagatttcaaaaagtttaaggtcaccatcctgtccagactggctaacgccctgaccgagg acacaatcaattcaatccactcgttttcacgcaagagcgtcaccaaagccagttcgatgactgaaaaagaatccattttg ctctgaactttggaacccaacatggattacagtagatcattggtttccagcaatgatccagagctccttgaggttgtctt ctaggattagtccagtggtttcaggaggaacttgaaattggcttggtgaatctaagccaatggtggttacgaggttctaa gtacactcttgtttattccgatcacagctttttaaaggttatggca |
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Protein
| Protein ID | habu1_s399842_g24587.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24587.t1 MGPGRKCSWLYNKGAVKSIRDEERKLGYIQQVRIQTGGREDFLEPKHLLKGTFPHQQRKVPVRPTQLNSPPAVLSPYSCF EPRLLMVMEELENITYYSDYYIYEHFNPVRDTYSKPPQIDPLTIVQVVAALIYSLTCLLGLLGNGLVIAIIFKMKKSVTT IWFLNLAAADFLFNVFLPLNIAYTAMGFHWVFGRDMCKVSTLLLNLNMCTSVLLLTTISIDRCILVVFPVQSQKRRTPTI AWLSCILIWVLGFLMSSPSLVFRDTTTTHDRIRCFYNFSLSSSPNDTALGIQRHKMVTTFRFLVGFIIPMIVITVCYITI IFRLKKNRLAKSKKPLRIIVAIITTFFLCWCPYHTLHLLETDHRSVPENVFEIGLPLVTAIAASNSCMNPILYVFMGQDF KKFKVTILSRLANALTEDTINSIHSFSRKSVTKASSMTEKESILL |
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