Gene
| Gene Model ID | habu1_s399842_g24610 |
|---|---|
| Locus | habu1_scaffold399842 : 1117630 ... 1135410 : - |
| To GenomeBrowser | habu1_scaffold399842:1117630..1135410 |
| Genes list of scaffold | habu1_scaffold399842 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transient receptor potential cation channel subfamily v member 4 | GO:0005216 GO:0016021 GO:0034220 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s399842_g24610.t1 | 1 | 1 | GLTP | 17 | 169 | 1.1e-35 | 122.8 | 1.4e-38 | 2.6e-35 | 121.6 |
| habu1_s399842_g24610.t1 | 2 | 1 | Ank_2 | 398 | 474 | 4.3e-14 | 52.6 | 1.2e-08 | 2.3e-05 | 24.6 |
| habu1_s399842_g24610.t1 | 1 | 1 | Ank_5 | 442 | 474 | 8.6e-12 | 44.9 | 1.7e-06 | 0.0032 | 17.6 |
| habu1_s399842_g24610.t1 | 1 | 1 | Ank | 445 | 474 | 1.1e-13 | 50.1 | 1.1e-09 | 2.0e-06 | 27.3 |
| habu1_s399842_g24610.t1 | 1 | 1 | Ank_3 | 445 | 472 | 2.5e-11 | 42.6 | 1.5e-07 | 0.00028 | 20.8 |
| habu1_s399842_g24610.t1 | 2 | 2 | Ank_2 | 492 | 537 | 4.3e-14 | 52.6 | 2.9e-06 | 0.0054 | 17.0 |
| habu1_s399842_g24610.t1 | 1 | 1 | Ion_trans | 730 | 925 | 9.5e-07 | 28.2 | 5.1e-10 | 9.5e-07 | 28.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s399842_g24610.t1 | gi|602677671|ref|XP_007444281.1| | PREDICTED: LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 4 [Python bivittatus] | 0.0 |
| habu1_s399842_g24610.t1 | gi|729766445|ref|XP_010580365.1| | PREDICTED: transient receptor potential cation channel subfamily V member 4 [Haliaeetus leucocephalus] | 0.0 |
| habu1_s399842_g24610.t1 | gi|564268156|ref|XP_006272877.1| | PREDICTED: transient receptor potential cation channel subfamily V member 4 isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s399842_g24610.t1 | gi|543713918|ref|XP_005498257.1| | PREDICTED: transient receptor potential cation channel subfamily V member 4 [Columba livia] | 0.0 |
| habu1_s399842_g24610.t1 | gi|530617720|ref|XP_005298588.1| | PREDICTED: transient receptor potential cation channel subfamily V member 4 isoform X1 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.3 |
| Venom grand-1 | 1.6 |
| Pit, infrared sensing | 2.3 |
| Nose | 1.6 |
| Brain-1 | 0.4 |
| Eye | 1.1 |
| fetal fibroblast | 0.8 |
| venom gland-2 | 1.6 |
| Brain-2 | 0.8 |
| Spleen | 0.7 |
| Lung | 4.6 |
| Liver | 2.0 |
| Kidney | 2.5 |
| Pancreas | 0.9 |
| Small intestine | 1.9 |
| Large intestine | 0.9 |
| Stomach | 2.0 |
| heart | 1.2 |
| ovary | 1.2 |
| cheek muscle | 2.3 |
Transcript
| Transcript ID | habu1_s399842_g24610.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24610.t1 gacgaccggattccttctgccgagtcgccgggtcggactgctgggctcccgccatggcgctgctgctggagtacgagttc cggacactgccggccgataagcagatcgacacggagcccttcctggaggccgtgacgcacctgccgcccttcttcgactg cctgggcaccccacttgtctacgccccagtgaaggcggatctctccgggaacattaagaaaatacgggcggtttacgaaa caaacccagccaagttcaaaacccttcagaacatcttagaagcagagaaggaaatgcacgggccagcgtggccaaaggtg ggggccaccttggccctcatgtggctgaagaggggtctcaagttcatccaggtcttgctgcagagcctttgcgatggcga gcaggataaggacaaccccaacctgatccgcgtgaacgccaccaaagcctacgagctggccctgaggaagtaccacggct ggattctgcagaagcttttcctgggctccatctacgctctgccctacaagtcagacctgctgaaggccctggagaaaggc caggacgtcaagcaggaagagacccttgaaaagatccaccagttcttgtccaaagcaacacccatcctcgacaccatcta tgagatctcctttcctcccccagaccaccctgtcctgcgcatgatggccgacccagaggatacccaccaggccagcccca ccggggccactgaggccccagccgaggagtcctccccacagggcgatgccttcccgctctcctccctggccaacctgttt gagggtgaggagggctctgggcctggcgaggccccccgcagcccccccggctcgggggatggcaagcagaacctgcggat gaagttccagggtgccttccggaagggggtccccaaccccatggagctgctggagtccaccatctacgaatcctcggtgg tgccggggcccaagaaagcccccatggactccctcttcgactacggcacctaccgccacctccccagcgacaacaagcgg aggcgaaagagggtcctggagaagaagcgccccagcaacaaggggcctgcacccagccccccacccatcctcaaggtctt caaccggcccatcctcttcgacatcgtctcccgggggttcatggctgggctggacggcctcctgcctttcctgctgagcc acaagaagcggctgactgacgaggagttccgagagctctccaccggcaagacgtgtctccccaaggccctgctgaacctc agtggtggccggaacgacaccatcccgctcctgctggacattgcggagaaaacgggcaacatgcgagaattcatcaatgc gcccttccgagacgtctattaccgaggccagaccgccctgcacattgcgatcgaacgacggtgcaagcactacgtggagc tgctggtggagaagggggccgatgtgcacgcccaggcgcggggccgtttcttccagcccaaagacgagggcggctacttc tactttggggagctgcccctctctctggccgcctgcaccaaccagccccacatcgtccactacctgacggagaacgccca caagcaggccgacctccggcggcaagactcccggggcaacacagtgctccacgccttggtggccattgcggataacaccc gcgagaacaccaagttcgtcactaagatgtacgacctgctgttcatcaaatgtgccaagctgttcccagacaccaacctg gaatccctgctgaacaatgatggcctctcgcccctcatgatggcggccaagaccggaaagatagggatctttcaacatat catccgccgggaggtgaaggacgaggatgcgcggcacctctcccgcaagttcaaagactgggcctacgggcctgtctact cctccctctacgacctgtcctccttggacacctgtggagaggaggtgtccgtgttagagatcttggtctacaatagcaag attgagaaccgccatgagatgttggccgtggagcccatcaatgagctgctgcgagacaagtggcgcaaatttggggccgt ctccttctatatcagcgtggtctcttacctctgtgccatggttatcttcaccttggtggcctactaccgccccctggagg gcacacccccgtacccgtacacgaccaccccggactaccttcgcctggctggagagatcgtcaccctcttcacaggggtt ctttttttcttcaccaatatcaaggatctgttcatgaagaaatgcccgggggtcaattccttcttcattgatggctcctt tcagttactctacttcatctattccgtcctggtcctggttgcagctgctctctacctggctggcatcgaggcctacctgg cagtcatggtctttgcgctggtgctgggctggatgaacgccctctacttcacccgcggcctcaagctgacgggcacctac agcatcatgatccagaagatcctgttcaaagaccttttccgcttcctcctggtttacgtccttttcatgatcggctacgc atccgcgctggtctccctgctgaacccctgctccagtgccgagtcctgccgtgaggaccgctccaactgcacggcgcccg cctacccctcctgccgcgacagcaaaaccttcagcaccttcttgctggacctcttcaagctgaccatcggcatgggggac ctggagatgatcgagaacgccaagtaccccggggtctttgtcatcctcctggtcacctacatcatcctcactttcgtcct cctgctcaacatgttgatcgccctcatgggggagacagtggggcaggtctccaaggaaagcaagaagatctggaagctcc agtgggccaccaccatcctggacattgagcgctccttccctgtgtttgtccggaaagccttccgctcgggagagatggtc accgtggggaagtctctggacggggcccctgaccgaaggtggtgcttcagagtggacgaggtgaactggtctcactggaa tcagaacctgggtatcatcaacgaggaccccggcaagaatgacacctaccagtattacggcttctcccacaccgtggggc gcctgcgcagagatcgctggtcaacggtggtgcctcgcgtggtggagctgaacaaaaattctcagccggacgaggtggtg gtgcccctggacagcctgtgctcagcaggagcaaacgcgcagaagcccagctaccctcacagctggaggaaggaagaggc tcagatctagctgccaagccccctcctgcagtctttgggacagcccccgttgccccatcggaccctcccaaactgggatc ctgatggagctgcctcctggctcccacagccggagagatcagcctgcctcccacgaacctgactttgaacgggacaagag aggtccagcctctcgcattttaaacaaaacattccttttaaaaacactcctataaagagaaactggaaacccgggtttag gtggccgctttgtgcatcacaagggcggctctgcacggagggaggccgaggtagctcaggagctgagagtgttgtcctta aaggagggagactctgaatgctgagtctggactccgccagaggagccttccagaagggccgctattaagaaggcgccagg caatcgtccagagcggctcctttgaagatataagcacgttcccagttctccgtgaattccctgcggtctgaaaacacgca ggcaggctcaggtgttcactctgcctggggatggtgagtctcctctgatagtatcattttgcacaaggttttattgaatt atttatttagtaataaaagccaaagcatctctattgtac |
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Protein
| Protein ID | habu1_s399842_g24610.t1 |
|---|---|
| Definition | - |
>habu1_s399842_g24610.t1 MALLLEYEFRTLPADKQIDTEPFLEAVTHLPPFFDCLGTPLVYAPVKADLSGNIKKIRAVYETNPAKFKTLQNILEAEKE MHGPAWPKVGATLALMWLKRGLKFIQVLLQSLCDGEQDKDNPNLIRVNATKAYELALRKYHGWILQKLFLGSIYALPYKS DLLKALEKGQDVKQEETLEKIHQFLSKATPILDTIYEISFPPPDHPVLRMMADPEDTHQASPTGATEAPAEESSPQGDAF PLSSLANLFEGEEGSGPGEAPRSPPGSGDGKQNLRMKFQGAFRKGVPNPMELLESTIYESSVVPGPKKAPMDSLFDYGTY RHLPSDNKRRRKRVLEKKRPSNKGPAPSPPPILKVFNRPILFDIVSRGFMAGLDGLLPFLLSHKKRLTDEEFRELSTGKT CLPKALLNLSGGRNDTIPLLLDIAEKTGNMREFINAPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENAHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLFIKC AKLFPDTNLESLLNNDGLSPLMMAAKTGKIGIFQHIIRREVKDEDARHLSRKFKDWAYGPVYSSLYDLSSLDTCGEEVSV LEILVYNSKIENRHEMLAVEPINELLRDKWRKFGAVSFYISVVSYLCAMVIFTLVAYYRPLEGTPPYPYTTTPDYLRLAG EIVTLFTGVLFFFTNIKDLFMKKCPGVNSFFIDGSFQLLYFIYSVLVLVAAALYLAGIEAYLAVMVFALVLGWMNALYFT RGLKLTGTYSIMIQKILFKDLFRFLLVYVLFMIGYASALVSLLNPCSSAESCREDRSNCTAPAYPSCRDSKTFSTFLLDL FKLTIGMGDLEMIENAKYPGVFVILLVTYIILTFVLLLNMLIALMGETVGQVSKESKKIWKLQWATTILDIERSFPVFVR KAFRSGEMVTVGKSLDGAPDRRWCFRVDEVNWSHWNQNLGIINEDPGKNDTYQYYGFSHTVGRLRRDRWSTVVPRVVELN KNSQPDEVVVPLDSLCSAGANAQKPSYPHSWRKEEAQI |
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