Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s399842_g24616
Locus habu1_scaffold399842 : 1185521 ... 1213380 : +
To GenomeBrowser habu1_scaffold399842:1185521..1213380
Genes list of scaffold habu1_scaffold399842

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s399842_g24616.t1 1 1 Tankyrase_bdg_C 1585 1688 3.4e-21 76.2 4.6e-25 3.4e-21 76.2
habu1_s399842_g24616.t1 2 1 Crystall 1750 1832 0.0 185.7 2.5e-30 1.8e-26 91.7
habu1_s399842_g24616.t1 2 2 Crystall 1840 1922 0.0 185.7 8.8e-31 6.5e-27 93.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s399842_g24616.t1 gi|602651634|ref|XP_007432197.1| PREDICTED: uncharacterized protein KIAA1671 homolog isoform X1 [Python bivittatus] 0.0
habu1_s399842_g24616.t1 gi|602651636|ref|XP_007432198.1| PREDICTED: uncharacterized protein KIAA1671 homolog isoform X2 [Python bivittatus] 0.0
habu1_s399842_g24616.t1 gi|602651632|ref|XP_007432196.1| PREDICTED: beta-crystallin B2 [Python bivittatus] 0.0
habu1_s399842_g24616.t1 gi|530617668|ref|XP_005298562.1| PREDICTED: beta-crystallin B2 [Chrysemys picta bellii] 0.0
habu1_s399842_g24616.t1 gi|529421381|ref|XP_005230548.1| PREDICTED: beta-crystallin B2 isoform X2 [Falco peregrinus] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 6.9
Venom grand-1 6.6
Pit, infrared sensing 5.7
Nose 7.1
Brain-1 5.2
Eye 691.6
fetal fibroblast 2.0
venom gland-2 6.2
Brain-2 4.6
Spleen 3.0
Lung 10.0
Liver 2.4
Kidney 6.1
Pancreas 3.1
Small intestine 19.8
Large intestine 8.3
Stomach 4.6
heart 4.4
ovary 6.8
cheek muscle 6.8

Transcript
Transcript IDhabu1_s399842_g24616.t1
Definition-
>habu1_s399842_g24616.t1
cgctgaggcggaggccacgccccctcgtggcgctctcggctgcaccgcggagagaagggcgcgattggaggcgcgggagg
ctggtgcccgacccagggtgctccttctggcaggaccctcgccgtcccaattccgtgaggcgcttaaggagagcaatggc
cacacaagtcgaattcggctctgccctgacctccctggccggcataagcgagccaaggaacgaggccaccttccggcact
ccttcatcagcccgctgtctgacaccagccccagttctctggccccgctcatcctggagggcaggaacaagctggggaat
cccgtgggtcccaccaccatgccctccactgcgtccaggccgccttggacccccaggccgttttcccgggaggcgtctac
cgacacgtttgctacggtgaaaccgcccatcccggcactcaagcccagcagcactacaccaaagtcccccacctttgccc
agatctttgaagacgctcccaggggatcaactggaaatgtcccaccgctgctggatcaaaaatcaatggaaagccaaccc
cccagggagccggtcgcccacctgcccttctgcctgagtcctcaggcaaacaccgtcatcctctttgaaagcagaagccc
tgcgcaggggaggcccgaagagggagggtccaaggcccaggaggggcagctgctacgctcccagtcagagaagtggcccc
gaaggcagccctccctctgcacggaccccaagccggtctcctgggcccctcactggaaggaggccattgcgggggccccc
aggggttcagctagcagtgttgagccacagcagcgtccgactctggccgctgagacgcattcccaggcaggagggagacc
agcggcctcggctggctttcgggaatcctggcaggaacagacgcaatcgactcctccggcggctgcttccggccaaggga
ccccaaagccgaggccgctctccaccgatctcacaggcagatttgcatcccaggaggtctcctggcagaagaagccttgt
ctggctgaaaggagagagacgagctttctggcagccggcgaccgggccctggaggccacaggagcgaggagcgcagcagc
cggcttaagtggggctgccccgggagtgaaaagtgccagccagctgcctaagtctccccaaagctgcttgtcctcagctg
cagctggagcagctcccccgggccaggctgtcccggaagactcggggcaaaactccagaaaggaggagaaggtgccctgg
gagctcggaagccagggggagcccagtgtggggcagcacagcgctagcacaggccagcctttgggggaatggggagaggt
cagtccccaggaggctggcttaaggaacaccgacgccttgggtggcaagcacagaggctgcggtaaaaagactgtccctc
tcctggacccatcagcaaagccttgggctcccagcccgagcgagtccctctgcggcagccccggacaggagctccggata
ctgaacatccaacagaggattaaagtgctgacggcagagaatgcgggcctcaaggcaggaagcctgcgtgcctccttccg
ctcacggcctctttccacagatttgacaaagatgttttctggccccgtgactgcaagtgagctgaagcccaagaggcagc
ctgaatggaacaggaagcctgctggtgaaatacaagatgctccagaggacgagacgctgcctgcgggtggaaaagatgtt
ggagaagccggcatggctggcagtccctggaagcccctgctgctggcaaaaacaccgtccatagagggtccccccaagag
agagggcacccttgccaaaggcaggccaaacacttcttcgcctgggaaagagcccggcttggtcctcagccccaaagcaa
gaacgttctccagttcttccactgaagatgccggccctaaaacagtcagagccaccatgtttgaacatcacgtgcagaga
cacagcgtggtgaccagccagcttggccttgaaccggccttgctgtcactgatggcgccctttggagactcgccctcccg
tggccaggaatcagggacggagagaatgctgggagatggccagttgggtaatgcttcagggggggccggaggatccaaag
ttgccagacctttaaccgaggacgaaggctctccactgtgggctgaagagcccccgagggagaaggatgagcaaagtgct
tcaaagggcatggaggattccctgctggcccagaggatcgagcccaggtacgaggtcctgcagaccgtgggggagagggc
ccagagcgaggcggtggccgccatctccggagggaaggccgtcactctgcggcgccagaggcctttgaaggagaaccgga
gagccagtggatatggcaggagcgaaggctggagcgaggctcctaccccggaaaccggcccgttgaaggacctccctgcc
tttgggagccagggtgctttccccggagaaggaaccgggccagacagaaatcgggtcggacagcagccggcctctgagaa
ggcagcgtccttcaggatgaaggaggacggcaactttgcaccatggctggacaccgaaaaggagaggtggcttgctccag
ccggtttgagggatcgcatcccgcggagggctggagccagggtgcccggggctgatggctgcgaaggtcagaagacgagt
cccctgcaaagaggcagctgcccagggctcctctttggcctggacctgaagccccctcaggcctctgaaggacagaagct
gcgcttggccggatacggagcccaagaacagtgggagggcatggcggaagggaaggagttgcgaggagccggcatcgaag
tgaggtggacgagcagcttccgtaacgtttctgcccccaaaggttcagaacggtggcgaaggaagactctaccccacagc
gctgccaggcttgagggcccgggggagccccctcaagaccctgccgaactagccagccgaagcgacgccctgcatctgat
ggatggtgcagctgcaaagagaagcccccaggccctccgtggactaggccccaggcaggcggaggtcacctctcccagca
gcccaaagaagccgctctctccttcagagcccaaggccacgtattttgcagtcacctgccaaatctcggaggaggagatc
aataaccagcctgggagagctgcggctgtggctcctcctgcgagcgcttccaggagagctgatccctccaattgccagcg
cagggagtgcttttcggagggagggagctctccaggcaggcctcttagcaggcacaggggagaaagaggcgccgcctcgg
accgttcggtgactggggcttctcgggagccactgaccgaggccagagagcagggccaggagctgctgcagagacagctg
gaggcggcggcggctgaagggcgtctggccagagctgacccgcccttctgtcctgggacaaggtctcctccttacctggc
acccctccagcaggatagccagcagaagagatccggtgccctcgatttcggcagagcgggagagaaagcccccgaccact
acagatcgagagtggttgacattgatgagctgatggcagaatatgggggagagtcccagaagctttgtgagtgggagggc
cagagagagagcagcttctttccttgggagaaatggccccccaggcacaatttctcggggaaccttccctgcagctccga
ccagagagagaagagcagggtggagcactccctgggcagcagagggccaggcaccggggccagcagtggcgagggcagcc
atgtgcccgagagcgatgcgctggagagggccagagaggagaagtgcagccctcctcagtggggcaggccagacacagag
aaggcaaagccctggtctgcagagccccccgggccaaggaccaagacagcctttcttgtcggcagagaggaaggagaggg
caccgggcggggcccccagagtgccaaagatgctactcctggcccccaccctgcctgtatggacccgggagccttgtgga
aggaagccattccaaagaagtgggcggttctggcccctgccagcgggtggtgccccagcagtgactggggtggcaagact
gggtggaaagctgagccccaggccggagtctgggagaagggctctcctgcagagcatactggaacggaacggagcaattc
caccgcatccctggggacaggcaccatgccggacctgaagtgttcctctgaaaaaaaccatcagagccaagcaaggccca
gctttccttcgggaccaaggctggatcagccccatgtctgccagaggttcgctcctgaaaggcccggggtctggctgagc
aagggagacccgtcgccgagggactgcttctctcacggagggacaagggaccttgggaaagaaggcctcaccgtggaccg
tgacgatgccacaaccaccaagcgctctctgtacctccttacacagcgacggagtcagagtttctataaagagcggagga
ccgaccactggtcaggggaccatttgaaggagtgcttcggccggccatcagcagaggccagggacaccgacgtcctcgtg
caggaggccgacagcaggtatggcacctggggcgaccagcagcacagtggagacagtttcgccccggagtccccttcctg
ggagggcagcgtggcccctgcacagaagccgtcccccggccaccgagcctccttgtactcatctcagagggatctggcca
ctgctgctgaccagcaggagtcatccagggagcagaggagccccagcctgggtgattccagcccagatgcagattcggcg
tctccccccacggagaaggccagcccggacttctccttcctggagcaaactccctgcctggactcggggaccctgaagag
ccgggtcctgctgggcaaaagacggcagcagcatcgggcccccatctcccgcatcctcaggaggagtgccagtgcccagc
cgcccccgttctctgcggcggagggagcagccagcgcctggatgttcagggactccacagaagagaagccccccaggagg
accaaagaggaggaagaggagccccctccagcagagaggcagctccgtgcccagccccggctgccgctctttccgggcct
ggccccctccgccctcaagcattcttggtttgggtcacatgctgatcaatattgctggcctgggactctgccgccctcta
taaatggtggggctcggcggcgggctttcagcggcaggagcaaattttggtgcaaccgggagcagccccctttcaccatg
gccttggaccaccagacctcgaagcagctgcaagcctcttccaagattgccctcttcgagcaggagaacttccaggggcg
ctgccaggagctgaataccccctgccccaacttgaaggaggccggcgtagagaaagtcagctccattgtggtgcattctg
gcccgtgggtgggatatgagcagtcccacttcaaaggggagcagttcatctttgagaagggggagtacccccgctgggac
tcctggaccagcagccgcaggagtgacagcatctccgccctgaggcccatcaaagtggacagccaggagcacaaaatcgt
cctgtacgagaatcccagcttcagcggcaagaagatcgagattgtggatgacgacgtgcccagcttccatgcctacggct
accaggagaaggtgtcctctgtgcgagtgcagagtggcacgtgggtgggctaccagtaccccggctaccgtggctaccag
tgcctgtttgagaagggcgactacaaggacaacctggagtttggagcccagcagcctcacatccagtcggtccggcgcat
ccgggacatgcagtggcaccagcagggcgccttctaccgcaccagctaagccccggctgggccccggagtgcccccctct
gcctcccggtcttcctccgctgcccggccgggccccccctccgctcgctgcctctgcttctgcttcccaccctgaataaa
gcttttgtcatctgaaacgctc

Protein
Protein IDhabu1_s399842_g24616.t1
Definition-
>habu1_s399842_g24616.t1
MATQVEFGSALTSLAGISEPRNEATFRHSFISPLSDTSPSSLAPLILEGRNKLGNPVGPTTMPSTASRPPWTPRPFSREA
STDTFATVKPPIPALKPSSTTPKSPTFAQIFEDAPRGSTGNVPPLLDQKSMESQPPREPVAHLPFCLSPQANTVILFESR
SPAQGRPEEGGSKAQEGQLLRSQSEKWPRRQPSLCTDPKPVSWAPHWKEAIAGAPRGSASSVEPQQRPTLAAETHSQAGG
RPAASAGFRESWQEQTQSTPPAAASGQGTPKPRPLSTDLTGRFASQEVSWQKKPCLAERRETSFLAAGDRALEATGARSA
AAGLSGAAPGVKSASQLPKSPQSCLSSAAAGAAPPGQAVPEDSGQNSRKEEKVPWELGSQGEPSVGQHSASTGQPLGEWG
EVSPQEAGLRNTDALGGKHRGCGKKTVPLLDPSAKPWAPSPSESLCGSPGQELRILNIQQRIKVLTAENAGLKAGSLRAS
FRSRPLSTDLTKMFSGPVTASELKPKRQPEWNRKPAGEIQDAPEDETLPAGGKDVGEAGMAGSPWKPLLLAKTPSIEGPP
KREGTLAKGRPNTSSPGKEPGLVLSPKARTFSSSSTEDAGPKTVRATMFEHHVQRHSVVTSQLGLEPALLSLMAPFGDSP
SRGQESGTERMLGDGQLGNASGGAGGSKVARPLTEDEGSPLWAEEPPREKDEQSASKGMEDSLLAQRIEPRYEVLQTVGE
RAQSEAVAAISGGKAVTLRRQRPLKENRRASGYGRSEGWSEAPTPETGPLKDLPAFGSQGAFPGEGTGPDRNRVGQQPAS
EKAASFRMKEDGNFAPWLDTEKERWLAPAGLRDRIPRRAGARVPGADGCEGQKTSPLQRGSCPGLLFGLDLKPPQASEGQ
KLRLAGYGAQEQWEGMAEGKELRGAGIEVRWTSSFRNVSAPKGSERWRRKTLPHSAARLEGPGEPPQDPAELASRSDALH
LMDGAAAKRSPQALRGLGPRQAEVTSPSSPKKPLSPSEPKATYFAVTCQISEEEINNQPGRAAAVAPPASASRRADPSNC
QRRECFSEGGSSPGRPLSRHRGERGAASDRSVTGASREPLTEAREQGQELLQRQLEAAAAEGRLARADPPFCPGTRSPPY
LAPLQQDSQQKRSGALDFGRAGEKAPDHYRSRVVDIDELMAEYGGESQKLCEWEGQRESSFFPWEKWPPRHNFSGNLPCS
SDQREKSRVEHSLGSRGPGTGASSGEGSHVPESDALERAREEKCSPPQWGRPDTEKAKPWSAEPPGPRTKTAFLVGREEG
EGTGRGPQSAKDATPGPHPACMDPGALWKEAIPKKWAVLAPASGWCPSSDWGGKTGWKAEPQAGVWEKGSPAEHTGTERS
NSTASLGTGTMPDLKCSSEKNHQSQARPSFPSGPRLDQPHVCQRFAPERPGVWLSKGDPSPRDCFSHGGTRDLGKEGLTV
DRDDATTTKRSLYLLTQRRSQSFYKERRTDHWSGDHLKECFGRPSAEARDTDVLVQEADSRYGTWGDQQHSGDSFAPESP
SWEGSVAPAQKPSPGHRASLYSSQRDLATAADQQESSREQRSPSLGDSSPDADSASPPTEKASPDFSFLEQTPCLDSGTL
KSRVLLGKRRQQHRAPISRILRRSASAQPPPFSAAEGAASAWMFRDSTEEKPPRRTKEEEEEPPPAERQLRAQPRLPLFP
GLAPSALKHSWFGSHADQYCWPGTLPPSINGGARRRAFSGRSKFWCNREQPPFTMALDHQTSKQLQASSKIALFEQENFQ
GRCQELNTPCPNLKEAGVEKVSSIVVHSGPWVGYEQSHFKGEQFIFEKGEYPRWDSWTSSRRSDSISALRPIKVDSQEHK
IVLYENPSFSGKKIEIVDDDVPSFHAYGYQEKVSSVRVQSGTWVGYQYPGYRGYQCLFEKGDYKDNLEFGAQQPHIQSVR
RIRDMQWHQQGAFYRTS

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