Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s399842_g24632
Locus habu1_scaffold399842 : 1527350 ... 1529451 : +
To GenomeBrowser habu1_scaffold399842:1527350..1529451
Genes list of scaffold habu1_scaffold399842

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s399842_g24632.t1 gi|602675511|ref|XP_007443234.1| PREDICTED: coiled-coil domain-containing protein 117 [Python bivittatus] 4.0e-27
habu1_s399842_g24632.t1 gi|701359741|ref|XP_009961288.1| PREDICTED: coiled-coil domain-containing protein 117, partial [Tyto alba] 9.0e-08
habu1_s399842_g24632.t1 gi|695143998|ref|XP_009499314.1| PREDICTED: coiled-coil domain-containing protein 117, partial [Phalacrocorax carbo] 1.0e-07
habu1_s399842_g24632.t1 gi|723124184|ref|XP_010294337.1| PREDICTED: coiled-coil domain-containing protein 117, partial [Phaethon lepturus] 3.0e-07
habu1_s399842_g24632.t1 gi|591367132|ref|XP_007058418.1| PREDICTED: coiled-coil domain-containing protein 117 [Chelonia mydas] 4.0e-07

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 2.0
Venom grand-1 3.4
Pit, infrared sensing 5.5
Nose 2.5
Brain-1 2.9
Eye 3.1
fetal fibroblast 2.8
venom gland-2 2.5
Brain-2 2.4
Spleen 2.0
Lung 2.5
Liver 3.5
Kidney 2.1
Pancreas 1.0
Small intestine 2.5
Large intestine 2.1
Stomach 3.2
heart 2.2
ovary 8.5
cheek muscle 5.5

Transcript
Transcript IDhabu1_s399842_g24632.t1
Definition-
>habu1_s399842_g24632.t1
cgaaggaatcttgaccaagaaaataattgagtccatgagccgtccatcaatggagctggtgctttggaagcctctccctg
aattcctccccgaaaaagaaggtttggcgtatattaagagctacaagccattggtcacagaaagacgccttggaaagcta
gcagccctggaagctgcctttccctcacagacagacaaattcctgacagagtctcagccagcagaaatgcccttggccca
gtttggggcggttggatctgagcaattttaaaaaaaactgcttttcagatatatacaaaaatgtaaattttttgagggat
agatgggcacccatttgttgaacaagaattgcttaaagatggaaattctgggagtgtttttgttggatagttaatataga
aaccagcaacactgcattgtggtctgccattgggccaagtcacaatttgtatgtcaataaactttttttaaaaaaaaatt
gta

Protein
Protein IDhabu1_s399842_g24632.t1
Definition-
>habu1_s399842_g24632.t1
MELVLWKPLPEFLPEKEGLAYIKSYKPLVTERRLGKLAALEAAFPSQTDKFLTESQPAEMPLAQFGAVGSEQF

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