Gene
| Gene Model ID | habu1_s4012_g13213 |
|---|---|
| Locus | habu1_scaffold4012 : 340956 ... 351990 : + |
| To GenomeBrowser | habu1_scaffold4012:340956..351990 |
| Genes list of scaffold | habu1_scaffold4012 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sorcin isoform x1 | GO:0002020 GO:0004198 GO:0005509 GO:0005789 GO:0005829 GO:0005886 GO:0006508 GO:0010459 GO:0030018 GO:0035774 GO:0042584 GO:0042994 GO:0046982 GO:0051281 GO:0060315 GO:0070062 GO:0070491 GO:0086004 GO:1901077 GO:1901841 GO:1901844 GO:2000678 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4012_g13213.t2 | 1 | 1 | EF-hand_8 | 42 | 98 | 4.3e-15 | 55.0 | 6.6e-15 | 2.0e-11 | 43.3 |
| habu1_s4012_g13213.t2 | 2 | 1 | EF-hand_6 | 42 | 57 | 7.7e-13 | 47.1 | 7.0e-06 | 0.021 | 14.6 |
| habu1_s4012_g13213.t2 | 2 | 1 | EF-hand_7 | 42 | 95 | 2.5e-10 | 40.3 | 3.0e-07 | 0.0009 | 19.3 |
| habu1_s4012_g13213.t2 | 2 | 1 | EF-hand_1 | 72 | 97 | 3.7e-16 | 57.1 | 6.9e-08 | 0.0002 | 20.3 |
| habu1_s4012_g13213.t2 | 2 | 2 | EF-hand_6 | 102 | 130 | 7.7e-13 | 47.1 | 1.5e-07 | 0.00046 | 19.8 |
| habu1_s4012_g13213.t2 | 2 | 2 | EF-hand_1 | 103 | 127 | 3.7e-16 | 57.1 | 2.0e-06 | 0.006 | 15.8 |
| habu1_s4012_g13213.t2 | 2 | 2 | EF-hand_7 | 105 | 158 | 2.5e-10 | 40.3 | 8.5e-07 | 0.0025 | 17.8 |
| habu1_s4012_g13213.t2 | 1 | 1 | EF-hand_5 | 106 | 126 | 1.9e-09 | 36.4 | 3.6e-06 | 0.011 | 15.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4012_g13213.t2 | gi|558213253|ref|XP_006134171.1| | PREDICTED: sorcin [Pelodiscus sinensis] | 0.0 |
| habu1_s4012_g13213.t2 | gi|742184436|ref|XP_010853652.1| | PREDICTED: sorcin isoform X2 [Bison bison bison] | 0.0 |
| habu1_s4012_g13213.t2 | gi|594636291|ref|XP_007171545.1| | PREDICTED: sorcin [Balaenoptera acutorostrata scammoni] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 67.3 |
| Venom grand-1 | 38.0 |
| Pit, infrared sensing | 50.0 |
| Nose | 61.3 |
| Brain-1 | 42.0 |
| Eye | 54.1 |
| fetal fibroblast | 66.2 |
| venom gland-2 | 47.8 |
| Brain-2 | 36.7 |
| Spleen | 19.9 |
| Lung | 31.4 |
| Liver | 27.7 |
| Kidney | 27.1 |
| Pancreas | 13.5 |
| Small intestine | 23.1 |
| Large intestine | 42.0 |
| Stomach | 46.0 |
| heart | 31.7 |
| ovary | 26.0 |
| cheek muscle | 17.2 |
Transcript
| Transcript ID | habu1_s4012_g13213.t1 |
|---|---|
| Definition | - |
>habu1_s4012_g13213.t1 tcgaagggaaatacacggtcagaaacggcgccacttgcagtttccccgcggagaaacgttttccaatcccttcctttcgc gacaatggtttgatccggacttcctccggtttggggcagtgctgagaggtcacggggaggttgccggcggtttccgaaga gtagctaatagaagattatggcgtattctggtcccggaggcgcctattaccagggcggggatgggcaaatagatgccgat gagctacaaaaatgtctgactcagtcaggaattgctggtacctataaaccctttaatttagaaacttgcagactcatgat ttccatgcttgatagagatatgtctggcacaatgggtttcaatgaatttaaagagctttgggctgtactgaatggctgga ggcaacattttatgagtgtggatggtgaccgcagtggtacagttgattctcaggagctgcaaaaagcattgttatccatg ggatttagattgagtccacaggccatcaatggaattgtgaaacgatacagctgtcgtggaaagatcagttttgatgacta tatagcctgctgtgtaaaactcagagctcttactgatagttttcgaagaagggatgcagcccagcaagggatggtgaatt tccagtatgatgatttcgttcagtgtgtcatgagcatctaactcagaatgaagatagacagatgagcatggatctacatt ccatatcactttgctttgcgtcaaaccaatatgctatgtaactaaattgtgatatttgcatattttataaatattaatca atatgcttttatagtttttgtaactaatgaaagaaggaaatacaataaatgttgtttgagtggatctgctttatatattt ataatttgcatgaggagaaaaggaaacaaattattcatgtttacatttaatttttctgtatcatttaaaattgatcacat tggaagatgctttgtatcaacactatctaggaagttaaaataggaatgtattgaaatgaattcataaaatgtcatgaagg tttatttctaggaagtttttttaaaaactcagaataaactaaaagtttgtcactttctacgcagtaagcaaaacattttt ctaagtgttcagttggctgtcttaatattttactctggtgtttatttcatagaaactgcccaattgggagttgatttaat taacatttgcctttttagtttagttttttattttaaccatttatatggttttccatctcactactgtgactctgctactg ctatatcacatatctgcatgcgaggaatattattgggatcaggaagagaataattgcctacatttcattttttaaaacac atgtcccccatctgcgtgtactaaagttgatacacaattcattaatttcagtggcagttgacaagaattttggctacatt attttttctctagagagatattttttcccatcctcaaaataaacacaactttcatgttgtgtctcttgcagaacgcatct tttgttttaaataaataactgctttaccaaaagcttt |
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| Transcript ID | habu1_s4012_g13213.t2 |
| Definition | - |
>habu1_s4012_g13213.t2 tcgaagggaaatacacggtcagaaacggcgccacttgcagtttccccgcggagaaacgttttccaatcccttcctttcgc gacaatggtttgatccggacttcctccggtttggggcagtgctgagaggtcacggggaggttgccggcggtttccgaaga gtagctaatagaagattatggcgtattctggtcccggaggcgcctattaccagggcgggtatggaagtgctccaggtgga ccagcatttcctggtcaggctcaagatccattatatggttattttgctgcagtagctgggcaggatgggcaaatagatgc cgatgagctacaaaaatgtctgactcagtcaggaattgctggtacctataaaccctttaatttagaaacttgcagactca tgatttccatgcttgatagagatatgtctggcacaatgggtttcaatgaatttaaagagctttgggctgtactgaatggc tggaggcaacattttatgagtgtggatggtgaccgcagtggtacagttgattctcaggagctgcaaaaagcattgttatc catgggatttagattgagtccacaggccatcaatggaattgtgaaacgatacagctgtcgtggaaagatcagttttgatg actatatagcctgctgtgtaaaactcagagctcttactgatagttttcgaagaagggatgcagcccagcaagggatggtg aatttccagtatgatgatttcgttcagtgtgtcatgagcatctaactcagaatgaagatagacagatgagcatggatcta cattccatatcactttgctttgcgtcaaaccaatatgctatgtaactaaattgtgatatttgcatattttataaatatta atcaatatgcttttatagtttttgtaactaatgaaagaaggaaatacaataaatgttgtttgagtggatctgctttatat atttataatttgcatgaggagaaaaggaaacaaattattcatgtttacatttaatttttctgtatcatttaaaattgatc acattggaagatgctttgtatcaacactatctaggaagttaaaataggaatgtattgaaatgaattcataaaatgtcatg aaggtttatttctaggaagtttttttaaaaactcagaataaactaaaagtttgtcactttctacgcagtaagcaaaacat ttttctaagtgttcagttggctgtcttaatattttactctggtgtttatttcatagaaactgcccaattgggagttgatt taattaacatttgcctttttagtttagttttttattttaaccatttatatggttttccatctcactactgtgactctgct actgctatatcacatatctgcatgcgaggaatattattgggatcaggaagagaataattgcctacatttcattttttaaa acacatgtcccccatctgcgtgtactaaagttgatacacaattcattaatttcagtggcagttgacaagaattttggcta cattattttttctctagagagatattttttcccatcctcaaaataaacacaactttcatgttgtgtctcttgcagaacgc atcttttgttttaaataaataactgctttaccaaaagcttt |
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Protein
| Protein ID | habu1_s4012_g13213.t1 |
|---|---|
| Definition | - |
>habu1_s4012_g13213.t1 MAYSGPGGAYYQGGDGQIDADELQKCLTQSGIAGTYKPFNLETCRLMISMLDRDMSGTMGFNEFKELWAVLNGWRQHFMS VDGDRSGTVDSQELQKALLSMGFRLSPQAINGIVKRYSCRGKISFDDYIACCVKLRALTDSFRRRDAAQQGMVNFQYDDF VQCVMSI |
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| Protein ID | habu1_s4012_g13213.t2 |
| Definition | - |
>habu1_s4012_g13213.t2 MAYSGPGGAYYQGGYGSAPGGPAFPGQAQDPLYGYFAAVAGQDGQIDADELQKCLTQSGIAGTYKPFNLETCRLMISMLD RDMSGTMGFNEFKELWAVLNGWRQHFMSVDGDRSGTVDSQELQKALLSMGFRLSPQAINGIVKRYSCRGKISFDDYIACC VKLRALTDSFRRRDAAQQGMVNFQYDDFVQCVMSI |
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