Gene
| Gene Model ID | habu1_s402966_g24985 |
|---|---|
| Locus | habu1_scaffold402966 : 225646 ... 234639 : + |
| To GenomeBrowser | habu1_scaffold402966:225646..234639 |
| Genes list of scaffold | habu1_scaffold402966 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna polymerase subunit gamma- mitochondrial | GO:0004812 GO:0005524 GO:0005739 GO:0006260 GO:0006281 GO:0006418 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s402966_g24985.t1 | 1 | 1 | HGTP_anticodon | 435 | 520 | 1.7e-12 | 47.0 | 3.9e-16 | 2.9e-12 | 46.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s402966_g24985.t1 | gi|602650020|ref|XP_007431408.1| | PREDICTED: DNA polymerase subunit gamma-2, mitochondrial [Python bivittatus] | 0.0 |
| habu1_s402966_g24985.t1 | gi|530578044|ref|XP_005282959.1| | PREDICTED: DNA polymerase subunit gamma-2, mitochondrial isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s402966_g24985.t1 | gi|558105029|ref|XP_006110661.1| | PREDICTED: DNA polymerase subunit gamma-2, mitochondrial [Pelodiscus sinensis] | 0.0 |
| habu1_s402966_g24985.t1 | gi|530578042|ref|XP_005282958.1| | PREDICTED: DNA polymerase subunit gamma-2, mitochondrial isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s402966_g24985.t1 | gi|591360549|ref|XP_007055193.1| | PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-2, mitochondrial [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.9 |
| Venom grand-1 | 14.5 |
| Pit, infrared sensing | 5.8 |
| Nose | 4.5 |
| Brain-1 | 1.9 |
| Eye | 2.9 |
| fetal fibroblast | 4.5 |
| venom gland-2 | 12.7 |
| Brain-2 | 1.6 |
| Spleen | 6.1 |
| Lung | 4.0 |
| Liver | 4.6 |
| Kidney | 1.6 |
| Pancreas | 10.8 |
| Small intestine | 3.9 |
| Large intestine | 3.6 |
| Stomach | 3.4 |
| heart | 1.8 |
| ovary | 6.9 |
| cheek muscle | 1.3 |
Transcript
| Transcript ID | habu1_s402966_g24985.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g24985.t1 atttcaatcagttccccggaagacgtttcatacatgtggctcgggcgttgctcccgctggggctgcttgtgccttgcaaa ttctggcgtttccgtaactcgcagcgctgagcgcggctcccgttgccccgtatctggtaggcccctcagttttctccaca ggcgctcccgaaagaggcggagagaggggcagccaggagccccgtggggggagcagctcgacagcctgaagctgctggcg aggagccgcgcggggccgtcgcagcttttccgggcctccgccgttcccttggtagcccagtcgcgcctctgcctatcttc tagcagcagcggcaacggcagccgcgaccatgcgggcgaggagtgcagcgaagcagccttggctgcttgtcagaggcggc atttcctccgaggagggggagaagacggcaagcagacctgggcttcttacctgcgaggggaccacccgggcttcgggcct ctgggggtggcgctgaagaagaacctggccgcgcagtggtgggaggccgtggtggtctttcgggagcacgtgctgggcgt ggagggcccggctcggctcgggcccgctgctgaccacgggcccctgggggaggccctgcgcctggtgcatccgcgcaccg tcggggagaccttgcaggaggccggatcggacggagagcagccgctcgccgccttgcagaaaatgctagcccgatctggg atgcttcgcgacaaccttcttcacggtgctttagagcattatattgattgtctggaattggtaaaccagagactgccttt tggaattgcgcaaataggagtatgttttcatccaaatgacacaaatcctatgagaacaggtgaaaggacaatggcatccc ttgtttggtacagctctgccagaacagctggacagtggcttggctattggttacgtcagcggctccaatggtggagaaag tttgccacaagcccatccaacttcagcagtggccctcacaatgaagaaggaagaaaaggaaacaatctgtattataattt tccctgggggaaggaaacaatagaaactctgcaaatgctgggagaccatgaactattacaaatgtatccaggaaacgtat caagattgcatggtcgagacgggagaaagcatgttgttcctcatgtcctctctctgaatggcaatttggacagcggagta ttagcgtacctctatgacagcatgcaagtgtctgaaaatggcttgaccaaaaagaaagctctgcagagaaaggtcctaaa acttcatccatgtttggcacccatcaaagtagctttggatatgggaaggggcccaacagtcgagttgaggcaggtgtgcc aagagttgttcaaggaattgttagaaaatgagattactgtttggcctggctatcttgaaaccatgcaatcctctttggag cagctttatacaaagtatgatgaaatgggtgtgctcttcacaatcctgatcagtgatgccacactagagaatgggctggt gcagttgcgaagcagagatactactttgaaagaaacgatgcatatatctagattaaaggacttcttaatcaaatatatgt ctgcagctaaaaatacttaatttctttttaaataaaggcaattttgaacctttatttctgaatgatgacacttctttacc ttaggtcatacaatataagtcagaatatgtcttctctaatatgtagttctgtttgctgggatatgcattctttccatatg agatgggaaggtaaatcagacaaaatttttcatgtgtagagttacaattgtgagttcataatattacagaactatgtcta acataaacagaaataatatgttgacattccatttccaagcttaagaacttgttttttttttaaaatggtatttcaaaggt tcaatattgtttttctccaatttagatttaaatagaaattaggatggatacattaagggcatctatcatctgaagaagga tcatttaagcctatatttaatcaaattgttctttttgcccattttcaacaacaatttacataaatggcatttccaaaagc ttgaaagcatactaatataggaagttggtgtcatatgcttcagtgtccatgttgctctttaataaaaacagaagccttgg agccaaattgccaagggacaataaataatgctgaatttcagaactgaacagaaacgacccgatcagttcctggttgttgt atctcaacagaactgacatcaaatcaaagacataaaataaggggcattagcttctttaaaatgtgacatgttataagcag tgaagtattttctagaaattcagtataaatgagcaattggaagagccagtttagctcggagaaacaagtgggaatcctgc ttcataagacagactcggcatctttatataatgaattataaaggcacacaaagtgaatgcaaaaaagcccactgatttat gagaccatccaaaaggatccctcagaaaccagttggctttgccttccctacatcagttataagtaatctttatcttctgg ttattttggaattcaaatcaactctgaaagtctgtgttcaaccctgtcttcccagtgaaggatcttatgtccacgcagac aaccaactaaccatccttatttagtgagcagataaacaaaacctgtgagtagggcaggtggcttaatttcccataggaaa attctgataaaagagagaaaaggaaggctaatgagctggcaaaagaagactgccttgaaaattctgagaacaacttagat ggaaaaggtaaggtggccgacacatggatctagacagtggtggctgttgaagatttgtttaaagtaatgctgaaagtaag tgaattggataggacaggtttatcttggtgagggcttgttccaaggcaattcagaagaaaattactgaagggaattgcca tgtgagttccagaagaagactcattgaaggtgaacaggaagatcacgtttggctttcacggatgattcccctgttgcagg aggtgacagaagataaggcattctaccagtcagagtctaggaaggaagcctgtactagtcttaagaaaatctgacctgta gatacataggtagtcttgcctcagtttccatcatggcattcttatgtgacttgaccaaacaatataattcttaattttat atatcttg |
|
Protein
| Protein ID | habu1_s402966_g24985.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g24985.t1 MWLGRCSRWGCLCLANSGVSVTRSAERGSRCPVSGRPLSFLHRRSRKRRREGQPGAPWGEQLDSLKLLARSRAGPSQLFR ASAVPLVAQSRLCLSSSSSGNGSRDHAGEECSEAALAACQRRHFLRGGGEDGKQTWASYLRGDHPGFGPLGVALKKNLAA QWWEAVVVFREHVLGVEGPARLGPAADHGPLGEALRLVHPRTVGETLQEAGSDGEQPLAALQKMLARSGMLRDNLLHGAL EHYIDCLELVNQRLPFGIAQIGVCFHPNDTNPMRTGERTMASLVWYSSARTAGQWLGYWLRQRLQWWRKFATSPSNFSSG PHNEEGRKGNNLYYNFPWGKETIETLQMLGDHELLQMYPGNVSRLHGRDGRKHVVPHVLSLNGNLDSGVLAYLYDSMQVS ENGLTKKKALQRKVLKLHPCLAPIKVALDMGRGPTVELRQVCQELFKELLENEITVWPGYLETMQSSLEQLYTKYDEMGV LFTILISDATLENGLVQLRSRDTTLKETMHISRLKDFLIKYMSAAKNT |
|