Gene
| Gene Model ID | habu1_s402966_g24997 |
|---|---|
| Locus | habu1_scaffold402966 : 847928 ... 874939 : - |
| To GenomeBrowser | habu1_scaffold402966:847928..874939 |
| Genes list of scaffold | habu1_scaffold402966 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-5b | GO:0005525 GO:0005768 GO:0007032 GO:0007264 GO:0015031 GO:0019003 GO:0019882 GO:0030100 GO:0030139 GO:0030742 GO:0048227 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s402966_g24997.t1 | 1 | 1 | Arf | 37 | 160 | 1.0e-12 | 47.6 | 6.8e-16 | 1.3e-12 | 47.3 |
| habu1_s402966_g24997.t1 | 1 | 1 | Ras | 40 | 199 | 0.0 | 207.4 | 0.0 | 0.0 | 207.1 |
| habu1_s402966_g24997.t1 | 1 | 1 | Miro | 40 | 154 | 3.5e-20 | 72.6 | 2.9e-23 | 5.5e-20 | 72.0 |
| habu1_s402966_g24997.t1 | 1 | 1 | Gtr1_RagA | 40 | 165 | 6.6e-06 | 25.4 | 4.5e-09 | 8.3e-06 | 25.1 |
| habu1_s402966_g24997.t1 | 1 | 1 | GTP_EFTU | 78 | 200 | 6.8e-06 | 25.6 | 8.1e-09 | 1.5e-05 | 24.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s402966_g24997.t1 | gi|602640519|ref|XP_007427069.1| | PREDICTED: ras-related protein Rab-5B [Python bivittatus] | 0.0 |
| habu1_s402966_g24997.t1 | gi|327276980|ref|XP_003223244.1| | PREDICTED: ras-related protein Rab-5B [Anolis carolinensis] | 0.0 |
| habu1_s402966_g24997.t1 | gi|557324472|ref|XP_006035270.1| | PREDICTED: ras-related protein Rab-5B isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s402966_g24997.t1 | gi|530649228|ref|XP_005311133.1| | PREDICTED: ras-related protein Rab-5B isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s402966_g24997.t1 | gi|591380852|ref|XP_007064966.1| | PREDICTED: ras-related protein Rab-5B isoform X1 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 16.4 |
| Venom grand-1 | 10.6 |
| Pit, infrared sensing | 14.8 |
| Nose | 16.1 |
| Brain-1 | 17.1 |
| Eye | 13.8 |
| fetal fibroblast | 46.7 |
| venom gland-2 | 24.9 |
| Brain-2 | 24.8 |
| Spleen | 10.6 |
| Lung | 19.1 |
| Liver | 17.4 |
| Kidney | 26.2 |
| Pancreas | 9.1 |
| Small intestine | 15.3 |
| Large intestine | 16.0 |
| Stomach | 17.4 |
| heart | 11.8 |
| ovary | 59.2 |
| cheek muscle | 44.3 |
Transcript
| Transcript ID | habu1_s402966_g24997.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g24997.t1 tagcgccccaggtgcctagcggccattggtttagaatgtagtctaactccgccttccggcatagagttgggtttggttga gatagtttgtttgtgtgcgaaacagtcgagggccgcgaagtggggggagccagtgccgtctcagattgatttatcctgaa tccacacaggtatagaactagattctggatattctgaaggatacactcttggagattagcagtaaactttttgtttaatg aagtcagctacttggtactggaaggacttgtcatcctgttcgaagcaggccatgaccagcagaggagctgccaggccgaa tgggcaatcgcaagccagcaagatctgccagttcaagctagtactgttgggtgaatcagcagtaggcaagtccagcctgg tgctgcgctttgtcaagggacagttccacgaataccaggagagcaccattggagcggctttcctcacacagtctgtctgt ctagatgatacaacggtaaagtttgaaatctgggatacagctggtcaggaaagatatcacagtttggctccgatgtatta ccgaggggctcaggctgccattgtggtatatgatataaccaaccaagaaacatttgcacgagcaaaaacatgggtgaaag aactccaacggcaagctagcccaaatattgttatagccttagcaggaaataaggctgatcttgccaacaagcgcatggta gaatacgaagaggcccaggcttatgcagatgataacagtctattgtttatggagacatcagccaagacagcaatgaacgt taatgatctctttctggcaatagctaagaagctgccaaagagcgagccccagagcacagggggtgctgtggggcggcgag gtgtggaccttcatgagcagtcccagcagaacaagagccagtgttgtagcaactgaatggtggcgttcaggcagcgagag ataagatataacctccatttctaccccactccacctcccctcccttccaataacagcattggcacacttggaagccgtcc cttctcctgagagcgccgtttcactgcacttctaacgcttcagaaaccatcacgagacgtctgttaccaccacccaacgg aaagtggagatagaccgaccggggacttaacttccaaaaacaaactcttattcactttgtattataggtgcaaatagcta cctacttatttggattcccctgctctgttttctccctgatactactcttttcccttgccatctcttatccctccagcgca cgtgcacccgtacacacccacgctgtctttgctctgataaaatatgtgttctttagtcctataacatccaccgccaccct tcacctccctttcccctttgttttctttaataatctgggggacagtcacaagcaaggagaaacgtaattcctgtagattt attttttaagagcaaatttaactgactttctcaaaaaaaaaaaaatatgcacaattatttgagaagatcctcttaggagt tctcttcttcattttccatagcttcagaaaagctgcagtgtcctcggttaactttttttcagggcagagttttgtggtta cattggagaggatgattgtatttgcttggttttttttttccctggctacggcatgagagtggtccaatgtctcagtgtcg tcaatataagaatgaaatggttataaattt |
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Protein
| Protein ID | habu1_s402966_g24997.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g24997.t1 MKSATWYWKDLSSCSKQAMTSRGAARPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSV CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPNIVIALAGNKADLANKRM VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTGGAVGRRGVDLHEQSQQNKSQCCSN |
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