Gene
| Gene Model ID | habu1_s402966_g25005 |
|---|---|
| Locus | habu1_scaffold402966 : 1246263 ... 1252335 : + |
| To GenomeBrowser | habu1_scaffold402966:1246263..1252335 |
| Genes list of scaffold | habu1_scaffold402966 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho-related gtp-binding protein rho6 | GO:0005102 GO:0005525 GO:0005622 GO:0005912 GO:0007015 GO:0007162 GO:0007264 GO:0016322 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s402966_g25005.t2 | 1 | 1 | Ras | 2 | 146 | 5.4e-28 | 97.4 | 2.1e-31 | 6.3e-28 | 97.2 |
| habu1_s402966_g25005.t2 | 1 | 1 | Miro | 15 | 89 | 5.9e-07 | 29.9 | 3.5e-10 | 1.0e-06 | 29.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s402966_g25005.t2 | gi|507676040|ref|XP_004638674.1| | PREDICTED: rho-related GTP-binding protein Rho6 [Octodon degus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.3 |
| Venom grand-1 | 3.4 |
| Pit, infrared sensing | 1.4 |
| Nose | 3.2 |
| Brain-1 | 15.9 |
| Eye | 1.7 |
| fetal fibroblast | 9.1 |
| venom gland-2 | 2.2 |
| Brain-2 | 18.6 |
| Spleen | 3.3 |
| Lung | 11.4 |
| Liver | 3.3 |
| Kidney | 1.4 |
| Pancreas | 2.5 |
| Small intestine | 4.6 |
| Large intestine | 9.9 |
| Stomach | 3.1 |
| heart | 0.1 |
| ovary | 56.6 |
| cheek muscle | 0.8 |
Transcript
| Transcript ID | habu1_s402966_g25005.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g25005.t1 gctggtgttgtagctgccgccacccgcttcgtttaccatcgccatgagggagagaaggactcctcagccagtagtggccc ggtgcaagttggttctggtgggggatgtacattgcggcaagacggccatgcttcaggtgctggccaaagactgctacccg gagacctacgtgcccaccgtttttgagaactacacagcatgcctggaaacggaggagcaacgggtggagctcagtctgtg ggacacatctggatccccatactatgacaacgtgcgccccctatgctacagtgactcagatgctgtcctgctctgctttg atgttagtcgccccgagaccatggatagtgcattgaagaagtggaagactgaaatcttggactattgtcacaatacccgt gtgctgctgataggatgcaagacagacctgcgtaccgacttcagcaccctgatggaattgtcccaccaaaagcaagcccc agtctcttatgaacagggttgttctgtagccaagcagctgggagcagaaagttacctggaatgctctgccttcacatcag agaagagcgtccacagcatcttccggacagtggcgtccctctgcctcaccaagcctggcctcccagggccccccaagagc cctgcccgaagttttcccaagagacttctccgtcttcccagccgatcggagctcatttcttccacttttaagaaggagaa agcaaaaagttgttctgtcatgtgaagggccggctgcagagggtggtgatggaactgctgtggactctgggcctccaggt ggcccctccagggtgggattcagggagtggattgccttttccaagccagagctggaaagttaaagaaggatccagtttcc ctctcttcccgttttgagcagacctgctgtccagggaggagggggaaacagcaaaacgtggctggacggcttgaatgaag attggcgcaaggcttgcctgctctgcaaggtcttggggcttggcacagcaacatcttggaccgtagcagctctggggact attgtgcatattagaaggaactgaaaaagaatcgccaccaccactatcctgcctcgccgatgcacaattaatatcttcct ttggccctaggtcatcacatccatctgctgcttgtcaattgcctgtcggatgcggactaagtgcaagcgtcactcctttc tccctctatgccaacacatgaacccctctctgtatctaggtgcccagggatccttccttgtggagataaagctaggggtg ggaggagagaatgaccttctattgattttatgtgtgtgttgaaagaaagaaaataaggggggcgggggagtctgtgaaat gttcagtgttattaaagagaacctatttattaatgaaa |
|
| Transcript ID | habu1_s402966_g25005.t2 |
| Definition | - |
>habu1_s402966_g25005.t2 gggctgctgccatttcatgttttcagcctgtcggtattccctccctttcttgcaatcggcttgagttgcagagctattca ccgattatctctgctgctgcttgatgacctacgtgcccaccgtttttgagaactacacagcatgcctggaaacggaggag caacgggtggagctcagtctgtgggacacatctggatccccatactatgacaacgtgcgccccctatgctacagtgactc agatgctgtcctgctctgctttgatgttagtcgccccgagaccatggatagtgcattgaagaagtggaagactgaaatct tggactattgtcacaatacccgtgtgctgctgataggatgcaagacagacctgcgtaccgacttcagcaccctgatggaa ttgtcccaccaaaagcaagccccagtctcttatgaacagggttgttctgtagccaagcagctgggagcagaaagttacct ggaatgctctgccttcacatcagagaagagcgtccacagcatcttccggacagtggcgtccctctgcctcaccaagcctg gcctcccagggccccccaagagccctgcccgaagttttcccaagagacttctccgtcttcccagccgatcggagctcatt tcttccacttttaagaaggagaaagcaaaaagttgttctgtcatgtgaagggccggctgcagagggtggtgatggaactg ctgtggactctgggcctccaggtggcccctccagggtgggattcagggagtggattgccttttccaagccagagctggaa agttaaagaaggatccagtttccctctcttcccgttttgagcagacctgctgtccagggaggagggggaaacagcaaaac gtggctggacggcttgaatgaagattggcgcaaggcttgcctgctctgcaaggtcttggggcttggcacagcaacatctt ggaccgtagcagctctggggactattgtgcatattagaaggaactgaaaaagaatcgccaccaccactatcctgcctcgc cgatgcacaattaatatcttcctttggccctaggtcatcacatccatctgctgcttgtcaattgcctgtcggatgcggac taagtgcaagcgtcactcctttctccctctatgccaacacatgaacccctctctgtatctaggtgcccagggatccttcc ttgtggagataaagctaggggtgggaggagagaatgaccttctattgattttatgtgtgtgttgaaagaaagaaaataag gggggcgggggagtctgtgaaatgttcagtgttattaaagagaacctatttattaatgaaa |
|
Protein
| Protein ID | habu1_s402966_g25005.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g25005.t1 MRERRTPQPVVARCKLVLVGDVHCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPL CYSDSDAVLLCFDVSRPETMDSALKKWKTEILDYCHNTRVLLIGCKTDLRTDFSTLMELSHQKQAPVSYEQGCSVAKQLG AESYLECSAFTSEKSVHSIFRTVASLCLTKPGLPGPPKSPARSFPKRLLRLPSRSELISSTFKKEKAKSCSVM |
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| Protein ID | habu1_s402966_g25005.t2 |
| Definition | - |
>habu1_s402966_g25005.t2 MTYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDVSRPETMDSALKKWKTEILDYCHNTR VLLIGCKTDLRTDFSTLMELSHQKQAPVSYEQGCSVAKQLGAESYLECSAFTSEKSVHSIFRTVASLCLTKPGLPGPPKS PARSFPKRLLRLPSRSELISSTFKKEKAKSCSVM |
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