Gene
| Gene Model ID | habu1_s402966_g25006 |
|---|---|
| Locus | habu1_scaffold402966 : 1260403 ... 1273492 : + |
| To GenomeBrowser | habu1_scaffold402966:1260403..1273492 |
| Genes list of scaffold | habu1_scaffold402966 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx23 | GO:0004386 GO:0005524 GO:0005682 GO:0005739 GO:0005886 GO:0008152 GO:0044822 GO:0070062 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s402966_g25006.t1 | 1 | 1 | DEAD | 414 | 614 | 0.0 | 157.4 | 0.0 | 1.4013e-45 | 154.5 |
| habu1_s402966_g25006.t1 | 1 | 1 | Helicase_C | 682 | 758 | 4.5e-27 | 93.7 | 2.4e-30 | 1.8e-26 | 91.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s402966_g25006.t1 | gi|602628764|ref|XP_007421314.1| | PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s402966_g25006.t1 | gi|637265481|ref|XP_008102226.1| | PREDICTED: probable ATP-dependent RNA helicase DDX23 [Anolis carolinensis] | 0.0 |
| habu1_s402966_g25006.t1 | gi|562881371|ref|XP_006168282.1| | PREDICTED: probable ATP-dependent RNA helicase DDX23 [Tupaia chinensis] | 0.0 |
| habu1_s402966_g25006.t1 | gi|149714248|ref|XP_001504169.1| | PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Equus caballus] | 0.0 |
| habu1_s402966_g25006.t1 | gi|301783663|ref|XP_002927245.1| | PREDICTED: probable ATP-dependent RNA helicase DDX23 [Ailuropoda melanoleuca] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 18.6 |
| Venom grand-1 | 16.8 |
| Pit, infrared sensing | 18.7 |
| Nose | 19.1 |
| Brain-1 | 15.6 |
| Eye | 18.3 |
| fetal fibroblast | 21.9 |
| venom gland-2 | 21.0 |
| Brain-2 | 15.0 |
| Spleen | 17.2 |
| Lung | 30.2 |
| Liver | 29.5 |
| Kidney | 16.8 |
| Pancreas | 15.0 |
| Small intestine | 17.1 |
| Large intestine | 20.7 |
| Stomach | 16.6 |
| heart | 21.3 |
| ovary | 35.5 |
| cheek muscle | 23.4 |
Transcript
| Transcript ID | habu1_s402966_g25006.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g25006.t1 acgttacagatggctggggaaacgattgaaaagagagagcgagattcttcacccatcaaagaagagcggaggcgctcacg gtcagcagaacgagatcgtgaacgggagcgcgatagaaaagcctctcctgttgcaaaggatagaaaacgacaccgctctc gtgacaggaggagaggtagtcgatcaagatcccgatctagatccaaatcagccgagagagaacggcgatataaagagagg gaaagagacaaagaacgagaacgcaataagaaagatcgagatcgggacaaagatgggcatcgaagagacagaaaacgatc caggagcacctccccaagtcggaacaaagattccaagtcaaggaaagatagagacgctcgcaaagatgaagatgatgatt cattgtccaagaaggaaaaggctcagccactttctctggaggagctgctggccaagaagaaagctgaagaagaggctgaa gctaagcccaagttcctttctaagaccgagcgagaggctgaggccttaaagcgtcggcagcaggaagtcgaggaacgaca gcggttcctggaagatgagagaaaaaagagaaagcaattccaagaaatgggaagaaaaatgctagaagaccctcaggaga gagagcggcgtgagcgcagggagcgcatggaacgagagaccaatggcaatgaagatgaggaaggacggcaaaaaatccgt gaggagaaagacaagaccaaggagctgcatgccatcaaagagcgatatttgggtgggatcaagaagcggagacgcactcg acatttgaacgaccgcaaatttgtctttgagtgggatgcttcagaagatacttctattgactataatcctttgtacaagg agcgacaccaggttcagttgctggggcgtggtttcatcgctggcattgacttgaaacagcagaagcgggaacagtcacgt ttctatggagacctgatggagaagcggcgaacgctggaagagaaggaacaagaagaggcgcgtttgcgcaagctacgtaa aaaggaggctaagcagcgatgggatgatcggcactggtctcaaaagaaacttgatgaaatgacagacagggactggcgta tcttccgtgaagattacagcatcaccaccaagggaggcaagattcccaatcccattcgttcctggaaagactcctcattg cctcctcacatcttggaggttattgacaaatgtggctacaaggaacctactcctatccagcgtcaagccatccccattgg tttgcagaatcgtgatatcatcggtgtagcagaaactggcagtggtaaaacagctgccttccttattccacttctggtat ggatcaccactcttcccaagattgataggattgaggagtcagaccaaggtccctacgctatcatcttagctcccactcgt gagttggctcagcaaattgaggaagaaaccattaagtttggaaagcccctgggcatccgcaccgtggctgtcattggtgg tatctcccgtgaggaccaaggcttccgcctccgcatgggttgtgagattgtgattgccacacctggccgattgattgatg tgttggagaaccgctacctggtgctgagccgttgcacctatgtggtattggatgaggctgaccgtatgattgacatgggt tttgaacccgatgtgcaaaaaattctggagcacatgcctgttactaaccagaaaccagataccgatgaggctgaggaccc agagaagatgctggccaattttgaatcgggcaagcataaataccgacagactgtgatgttcacagcaaccatgccacctg ctgtggaacgtctggcacgcagttacttgcgccggccagctgtggtttatattggctcagctggcaagccacatgagcgt gtggagcaaaaggtcttcctcatgtcggaatcagagaagagaaagaaactgttggctattttggagcaaggttttgatcc gcccattatcatctttgtcaaccagaagaagggctgtgatgtattggccaaatctttggagaaaatggggtacaatgctt gcacccttcatggtggtaaaggccaggagcagcgtgaatttgccctctccaatttgaaggctggtgccaaggacattttg gtggccacagatgtagccggtcgtggtattgacattcaggatgtgtccatggtggtgaattatgatatggctaaaaacat cgaagattacatccaccgcattggtcgaacaggacgagctgggaaaagcggggtagctatttcttttgtcaccaaagagg actctgctgtcttctatgaccttaagcaagctatccttgagagtccagtgtcttcatgccccccagaactggccaaccat ccagatgcccaacacaaaccaggaaccatcctcacgaagaagcgtcgggaggagactatctttgcctgagtgtatagtta atctacaaagagccctctccccccttgtattaaaatcgggggcaccctttgaccac |
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Protein
| Protein ID | habu1_s402966_g25006.t1 |
|---|---|
| Definition | - |
>habu1_s402966_g25006.t1 MAGETIEKRERDSSPIKEERRRSRSAERDRERERDRKASPVAKDRKRHRSRDRRRGSRSRSRSRSKSAERERRYKERERD KERERNKKDRDRDKDGHRRDRKRSRSTSPSRNKDSKSRKDRDARKDEDDDSLSKKEKAQPLSLEELLAKKKAEEEAEAKP KFLSKTEREAEALKRRQQEVEERQRFLEDERKKRKQFQEMGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEK DKTKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYG DLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPH ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELA QQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP DVQKILEHMPVTNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQ KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVAT DVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAISFVTKEDSAVFYDLKQAILESPVSSCPPELANHPDA QHKPGTILTKKRREETIFA |
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