Gene
| Gene Model ID | habu1_s4038_g13264 |
|---|---|
| Locus | habu1_scaffold4038 : 32706 ... 50228 : + |
| To GenomeBrowser | habu1_scaffold4038:32706..50228 |
| Genes list of scaffold | habu1_scaffold4038 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dynactin subunit 4 isoform x2 | GO:0005813 GO:0005868 GO:0005869 GO:0007097 GO:0047485 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4038_g13264.t2 | 2 | 1 | Dynactin_p62 | 23 | 126 | 0.0 | 369.3 | 0.0 | 0.0 | 158.4 |
| habu1_s4038_g13264.t2 | 2 | 2 | Dynactin_p62 | 139 | 428 | 0.0 | 369.3 | 0.0 | 0.0 | 216.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4038_g13264.t2 | gi|641756912|ref|XP_008164697.1| | PREDICTED: dynactin subunit 4 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s4038_g13264.t2 | gi|363739009|ref|XP_003642109.1| | PREDICTED: dynactin subunit 4 isoform 1 [Gallus gallus] | 0.0 |
| habu1_s4038_g13264.t2 | gi|564232504|ref|XP_006260630.1| | PREDICTED: dynactin subunit 4 isoform X1 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.5 |
| Venom grand-1 | 14.3 |
| Pit, infrared sensing | 11.3 |
| Nose | 14.4 |
| Brain-1 | 13.4 |
| Eye | 10.5 |
| fetal fibroblast | 16.9 |
| venom gland-2 | 13.4 |
| Brain-2 | 14.9 |
| Spleen | 7.1 |
| Lung | 10.7 |
| Liver | 4.5 |
| Kidney | 12.0 |
| Pancreas | 9.2 |
| Small intestine | 7.1 |
| Large intestine | 9.8 |
| Stomach | 9.6 |
| heart | 12.5 |
| ovary | 23.3 |
| cheek muscle | 23.6 |
Transcript
| Transcript ID | habu1_s4038_g13264.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13264.t1 cgctgaacagctgggccggctctcttctcccaagatggcttctctgcttcagtcagaccgcgtctcctatctggtgcgcg gcgaaaaggagatccgcatgccgctttcgcagctgtatttctgccgctactgcagtgagctccgttccctcgagtgtgtc tcgcatgaggtcgattctcactattgtcccagctgtttggagaatatgccttcagctgaagccaagctgaaaaaaaatag gtgtgctaactgttttgattgcccttgctgtatgcataccctttctacccgagcaacaagcattcctgctccgttgcctg atgatcctgctaagactacaatgaaaaaagcttattatctggcctgtggattttgccgctggacatccagggatgttggc atggcagataaatcagttgccagtggaggttggcaggaacctgaaaatccttatacacaaaagattaataaactggtgga atattatcaacagttggctcagaaggagaagatggaaagagatcgtaaaaaattagttcgacggcgaccattcatgccac tggctttttcggacaaatatggccttggaaccaggctccaacgtcagaggcctggggcccccatcagtgcccttactgga ctttcgctgaaagaaggggaagaccacaaggagataaaaattgaaccagctcaggctgtggaagaggtagaacctttacc tgaagattattacacaaggccagtcaatctaacagaagtgacaaccttaaagcagcgcctcctgcagccagattttcagc ccatttgtgcttctcaactttatccacgtcataagcaccttctgatcaaacgctcactgcgatgcaggaaatgtgaacac aatttgagtaaaccagagttcaaccccacatcaataaaattcaaaattcaattggctgctgtcaattacatcccagaagt gagaatcatgtctattcctaatctccgttatatgaaggaaagtcaagttcttctaactctaaccaatccagtggaaagcc ttacccatgtgaccttaaaagaatgtgaggaaaatgatcctgaggatattaatagtactgcaaaggtgatggttccttcc aaggaactaatcttggctggcaaagatgcagcagcagaatatgacgacttggcagaatctcaagatttccaagatgaccc tgacatcatagctttccggaaggctaacaaagttgggatattcatcaaagttactccacagaaagaagaaggaaaagtta ctgtaagctttaagatgaggcatgagttcaaaaatcttgccgctccaatgcgccccacagaggaatgtgatcagagttgt gaagtcatttggctcacccatcatgtggagctcagcctgggccctctgcttccctgaagtttgtgtcttgattgaatgct aaatgatagttgactgttacactatgctttgaaaatgcattgcg |
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| Transcript ID | habu1_s4038_g13264.t2 |
| Definition | - |
>habu1_s4038_g13264.t2 cgctgaacagctgggccggctctcttctcccaagatggcttctctgcttcagtcagaccgcgtctcctatctggtgcgcg gcgaaaaggagatccgcatgccgctttcgcagctgtatttctgccgctactgcagtgagctccgttccctcgagtgtgtc tcgcatgaggtcgattctcactattgtcccagctgtttggagaatatgccttcagctgaagccaagctgaaaaaaaatag gtgtgctaactgttttgattgcccttgctgtatgcataccctttctacccgagcaacaagcattcctgctccgttgcctg atgatcctgctaagactacaatgaaaaaagcttattatctggcctgtggattttgccgctggacatccagggatgttggc atggcagataaatcagttgccagtggaggttggcaggaacctgaaaatccttatacacaaaagattaataaactggtgga atattatcaacagttggctcagaaggagaagatggaaagagatcgtaaaaaattagttcgacggcgaccattcatgccac tggctttttcgcaacatactatacatgtagtggacaaatatggccttggaaccaggctccaacgtcagaggcctggggcc cccatcagtgcccttactggactttcgctgaaagaaggggaagaccacaaggagataaaaattgaaccagctcaggctgt ggaagaggtagaacctttacctgaagattattacacaaggccagtcaatctaacagaagtgacaaccttaaagcagcgcc tcctgcagccagattttcagcccatttgtgcttctcaactttatccacgtcataagcaccttctgatcaaacgctcactg cgatgcaggaaatgtgaacacaatttgagtaaaccagagttcaaccccacatcaataaaattcaaaattcaattggctgc tgtcaattacatcccagaagtgagaatcatgtctattcctaatctccgttatatgaaggaaagtcaagttcttctaactc taaccaatccagtggaaagccttacccatgtgaccttaaaagaatgtgaggaaaatgatcctgaggatattaatagtact gcaaaggtgatggttccttccaaggaactaatcttggctggcaaagatgcagcagcagaatatgacgacttggcagaatc tcaagatttccaagatgaccctgacatcatagctttccggaaggctaacaaagttgggatattcatcaaagttactccac agaaagaagaaggaaaagttactgtaagctttaagatgaggcatgagttcaaaaatcttgccgctccaatgcgccccaca gaggaatgtgatcagagttgtgaagtcatttggctcacccatcatgtggagctcagcctgggccctctgcttccctgaag tttgtgtcttgattgaatgctaaatgatagttgactgttacactatgctttgaaaatgcattgcg |
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Protein
| Protein ID | habu1_s4038_g13264.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13264.t1 MASLLQSDRVSYLVRGEKEIRMPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPCCM HTLSTRATSIPAPLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPYTQKINKLVEYYQQLAQKEKM ERDRKKLVRRRPFMPLAFSDKYGLGTRLQRQRPGAPISALTGLSLKEGEDHKEIKIEPAQAVEEVEPLPEDYYTRPVNLT EVTTLKQRLLQPDFQPICASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLAAVNYIPEVRIMSIPNLRYM KESQVLLTLTNPVESLTHVTLKECEENDPEDINSTAKVMVPSKELILAGKDAAAEYDDLAESQDFQDDPDIIAFRKANKV GIFIKVTPQKEEGKVTVSFKMRHEFKNLAAPMRPTEECDQSCEVIWLTHHVELSLGPLLP |
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| Protein ID | habu1_s4038_g13264.t2 |
| Definition | - |
>habu1_s4038_g13264.t2 MASLLQSDRVSYLVRGEKEIRMPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPCCM HTLSTRATSIPAPLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPYTQKINKLVEYYQQLAQKEKM ERDRKKLVRRRPFMPLAFSQHTIHVVDKYGLGTRLQRQRPGAPISALTGLSLKEGEDHKEIKIEPAQAVEEVEPLPEDYY TRPVNLTEVTTLKQRLLQPDFQPICASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLAAVNYIPEVRIMS IPNLRYMKESQVLLTLTNPVESLTHVTLKECEENDPEDINSTAKVMVPSKELILAGKDAAAEYDDLAESQDFQDDPDIIA FRKANKVGIFIKVTPQKEEGKVTVSFKMRHEFKNLAAPMRPTEECDQSCEVIWLTHHVELSLGPLLP |
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