Gene
| Gene Model ID | habu1_s4038_g13266 |
|---|---|
| Locus | habu1_scaffold4038 : 58926 ... 68973 : + |
| To GenomeBrowser | habu1_scaffold4038:58926..68973 |
| Genes list of scaffold | habu1_scaffold4038 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pre-mrna-splicing factor rbm22 | GO:0000060 GO:0000166 GO:0005487 GO:0005737 GO:0017069 GO:0033120 GO:0035690 GO:0036002 GO:0044822 GO:0045292 GO:0046872 GO:0048306 GO:0071013 GO:0090316 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4038_g13266.t2 | 1 | 1 | RRM_1 | 234 | 298 | 5.8e-12 | 45.0 | 5.0e-15 | 9.3e-12 | 44.4 |
| habu1_s4038_g13266.t2 | 1 | 1 | RRM_6 | 234 | 299 | 1.3e-11 | 44.2 | 1.2e-14 | 2.2e-11 | 43.5 |
| habu1_s4038_g13266.t2 | 1 | 1 | RRM_5 | 248 | 302 | 5.8e-11 | 42.0 | 6.2e-14 | 1.2e-10 | 41.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4038_g13266.t2 | gi|557276104|ref|XP_006021212.1| | PREDICTED: pre-mRNA-splicing factor RBM22 [Alligator sinensis] | 0.0 |
| habu1_s4038_g13266.t2 | gi|529424028|ref|XP_005231858.1| | PREDICTED: pre-mRNA-splicing factor RBM22 [Falco peregrinus] | 0.0 |
| habu1_s4038_g13266.t2 | gi|527257981|ref|XP_005147254.1| | PREDICTED: pre-mRNA-splicing factor RBM22 [Melopsittacus undulatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 12.6 |
| Venom grand-1 | 31.4 |
| Pit, infrared sensing | 18.5 |
| Nose | 13.3 |
| Brain-1 | 10.4 |
| Eye | 12.9 |
| fetal fibroblast | 22.4 |
| venom gland-2 | 18.3 |
| Brain-2 | 10.4 |
| Spleen | 17.6 |
| Lung | 29.8 |
| Liver | 45.2 |
| Kidney | 52.7 |
| Pancreas | 31.0 |
| Small intestine | 29.9 |
| Large intestine | 20.9 |
| Stomach | 27.4 |
| heart | 16.3 |
| ovary | 52.3 |
| cheek muscle | 21.8 |
Transcript
| Transcript ID | habu1_s4038_g13266.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13266.t1 cgagaagggatgttgggaagcgtgccgagggcgggggctgctgcctgctctgagcttttcctgtggcaggatagagaagc cgagatctttggagtcaggctagctttctccccggggtcacacggagggatcggggcggccaagtacattgatcagctct cctggaagaaggaagcgtgtggcttcctttctcttaatttaggatttccctattttgtgccagacctgtcttggagaaaa cccctatatccgaatgaccaaagaaaaatatggaaaagaatgcaagatctgtgccaggccgttcacagttttccgttggt gccctggtgttcgtatgcgttttaagaagactgaagtgtgccaaacgtgcagcaagctgaagaatgtttgtcagacttgc cttcttgacttggaatatggtttacctattcaggttcgtgatgctggaatctcacttaaagatgatatgcccaagtcgga tgttaataaagagtattacacccaaaatatggaaagagagatcatgaattctgatggcagtcgacctgttggtacccttg gaaaggcaacatctaccagtgacatgctgctaaaattggctcggaccaccccttactataagcgcaaccgccctcatatt tgttcattctgggtgaaaggagaatgtaaaaggggagaagagtgtccttacagacatgaaaaacctacagatccagatga tcctcttgcagatcagaacattaaagatcgctactatggtataaatgatcctgtggctgacaagctcctcaagcgagcgt ctacaatgcctcgtctggacccccctgatgacaagacaattaccacactgtatgtcggtggtctgggcgatactatcact gagtctgaccttaggaatcacttctatcagtttggtgagattcggacaataacagtggtccagaggcagcagtgtgcatt tatccagtttgctacccgacaagctgctgaagtagcagcagaaaaatccttcaacaaactcattgtgaatggccgcaggc ttaatgtgaagtggggcagatctcaagcagcgagggggaaagagaaggaacgagaagggattacagaatctggtctaaaa ctggaaccagttcctggtctacctggagctcttccacctcctcctgcagcagacgaggaagcggcttctgcaaactattt caatctatctcctagtggccctccagctgttgtaaacattgcccttccgccacctcctggcatcgcaccaccgccacccc caggatttgggccacacatgttccatgcgatgggacctccacctccttttatgagggctccaggccccatacattatcct tctcaagatccacaaagaatgggtgcacatgcgggaaaacacagcaatccttaaccccactgactcctttcttatttttc tttggacaagacatttaaatttgtggcatatcacatacagttacaataaatctcccttgtttctgtgcacccagcacaga tttaatcttattgtgtttcacagcaacaaaaacggatcccctgtataataaccaaaannnnnnnnnnnnnnnnnnnnnnn nnnttctgtttaaaaagaaaagaaataaaagaagaagcataactatgaatt |
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| Transcript ID | habu1_s4038_g13266.t2 |
| Definition | - |
>habu1_s4038_g13266.t2 cccgctttttttttttttcctttcaactttaagcacaataaaatggcgacgtctttgggatccaacacgtataatcggca gaactgggaggatgcggatttccctattttgtgccagacctgtcttggagaaaacccctatatccgaatgaccaaagaaa aatatggaaaagaatgcaagatctgtgccaggccgttcacagttttccgttggtgccctggtgttcgtatgcgttttaag aagactgaagtgtgccaaacgtgcagcaagctgaagaatgtttgtcagacttgccttcttgacttggaatatggtttacc tattcaggttcgtgatgctggaatctcacttaaagatgatatgcccaagtcggatgttaataaagagtattacacccaaa atatggaaagagagatcatgaattctgatggcagtcgacctgttggtacccttggaaaggcaacatctaccagtgacatg ctgctaaaattggctcggaccaccccttactataagcgcaaccgccctcatatttgttcattctgggtgaaaggagaatg taaaaggggagaagagtgtccttacagacatgaaaaacctacagatccagatgatcctcttgcagatcagaacattaaag atcgctactatggtataaatgatcctgtggctgacaagctcctcaagcgagcgtctacaatgcctcgtctggacccccct gatgacaagacaattaccacactgtatgtcggtggtctgggcgatactatcactgagtctgaccttaggaatcacttcta tcagtttggtgagattcggacaataacagtggtccagaggcagcagtgtgcatttatccagtttgctacccgacaagctg ctgaagtagcagcagaaaaatccttcaacaaactcattgtgaatggccgcaggcttaatgtgaagtggggcagatctcaa gcagcgagggggaaagagaaggaacgagaagggattacagaatctggtctaaaactggaaccagttcctggtctacctgg agctcttccacctcctcctgcagcagacgaggaagcggcttctgcaaactatttcaatctatctcctagtggccctccag ctgttgtaaacattgcccttccgccacctcctggcatcgcaccaccgccacccccaggatttgggccacacatgttccat gcgatgggacctccacctccttttatgagggctccaggccccatacattatccttctcaagatccacaaagaatgggtgc acatgcgggaaaacacagcaatccttaaccccactgactcctttcttatttttctttggacaagacatttaaatttgtgg catatcacatacagttacaataaatctcccttgtttctgtgcacccagcacagatttaatcttattgtgtttcacagcaa caaaaacggatcccctgtataataaccaaaannnnnnnnnnnnnnnnnnnnnnnnnnttctgtttaaaaagaaaagaaat aaaagaagaagcataactatgaatt |
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Protein
| Protein ID | habu1_s4038_g13266.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13266.t1 MTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGISLKDDMPKSDVNKE YYTQNMEREIMNSDGSRPVGTLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLAD QNIKDRYYGINDPVADKLLKRASTMPRLDPPDDKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFA TRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEREGITESGLKLEPVPGLPGALPPPPAADEEAASANYFNLSP SGPPAVVNIALPPPPGIAPPPPPGFGPHMFHAMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSNP |
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| Protein ID | habu1_s4038_g13266.t2 |
| Definition | - |
>habu1_s4038_g13266.t2 MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNV CQTCLLDLEYGLPIQVRDAGISLKDDMPKSDVNKEYYTQNMEREIMNSDGSRPVGTLGKATSTSDMLLKLARTTPYYKRN RPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPDDKTITTLYVGGLG DTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEREGITE SGLKLEPVPGLPGALPPPPAADEEAASANYFNLSPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHAMGPPPPFMRAPGP IHYPSQDPQRMGAHAGKHSNP |
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