Gene
Gene Model ID | habu1_s4038_g13268 |
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Locus | habu1_scaffold4038 : 94603 ... 175465 : - |
To GenomeBrowser | habu1_scaffold4038:94603..175465 |
Genes list of scaffold | habu1_scaffold4038 |
Annotation by Blast2GO
Annotation | GO |
---|---|
synaptopodin isoform x1 | GO:0003779 GO:0032233 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s4038_g13268.t2 | gi|591354410|ref|XP_007071561.1| | PREDICTED: synaptopodin [Chelonia mydas] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 4.1 |
Venom grand-1 | 13.9 |
Pit, infrared sensing | 5.7 |
Nose | 0.8 |
Brain-1 | 6.0 |
Eye | 4.1 |
fetal fibroblast | 15.4 |
venom gland-2 | 2.2 |
Brain-2 | 3.7 |
Spleen | 1.8 |
Lung | 1.2 |
Liver | 0.9 |
Kidney | 1.4 |
Pancreas | 0.7 |
Small intestine | 3.7 |
Large intestine | 2.3 |
Stomach | 1.2 |
heart | 2.3 |
ovary | 1.5 |
cheek muscle | 236.5 |
Transcript
Transcript ID | habu1_s4038_g13268.t1 |
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Definition | - |
>habu1_s4038_g13268.t1 atggagaatagatccacaccctcttccttgtgatgggctttagaggaagcactgctgtttctcccacttccaggcaatat ccaagaagagttgaaaattgcaaagaattttcttctgaagaagaacagctctgccaagcactgaatattatccaacaaga ggcaaaatgctaaaaacgaccttacaaccaccttgtctccaacctcagtccaactttgcaggctccggcagagctgaccc aaatcctcacattattaagaaatctaaggttggccctgcagaaggcaaaagctatttggcaaggctgcaaggaacgggaa acgatagtagccatggagagcaagtaaggaaagagtcagctggagaaaatctccagaaggaaacttggagagccaatggg aatgtcctcccccgcaagagcaatgacagcaggccggtgtccaatgagaaacgaggagactctccgtggcctgtttctga tgcgatggatcctgggattagcaacagggatgatcaaagtcaagactggaaagtggtgaaagtgaaacgagttctgcttt ctcctgccgaagaacctcggaaagcgaatttctccaggagtgcaagcttgtctgaaacagagctgaaggaagcaaaagca aggagccaaaggattgttgctcagctgacaaatccaccaagttccaattccaaaggggtcctgttgtttcacagacgtaa gcagcgagtgaatgcattcaccttaggagccccaaagccaaccaacccagatcgagtagctgcggagaacgacctcaaag ctatcactcacccttgcactctgagccatggggaggaatcgcctctgaagcagactccgaaacaaaaccaggagctgaac gcttcagtctgcgtcaataattttggacgctgggggcaaaaagtcaccatggaaagatatgaggaggatctgggtgtgga acatcctctagataacgctcagggccttctgtggaataaggaaaagaatgagacaattctttattcaacaaacccaacat cctctaaagatattccagaggaagaatttcagcagatccctctcagtgtataccttaaagagaatacagggacagcttca accaatggaatacatgaacctctcactgagtttggaaaagtgcctatggttgagcaaggatcaattatgggcaatataga aaacatcccagctaagactgaggatgaggctacccctaacattgagaaaaaagataccattcttgaaaaagaactgtatc ttctgcatatggatgaggaaaataatattctcgataaagaaccatatctacccataggtagtgagaaaaacaacaacatc cctgacaaagatctgtacgcagctgttattgacagggagaataatattgtcctcagcaagacaccaagtgaaccaatcat tgacagaaaggaaaatggagagttgccctgcatggaacaggatgagttggtcactgaaaatgagaacatttttcccactg ctgacactgaaaaagccactgatgtatgttctaatgaaaccagcacacaaaatcataggcagtactgtgaagtgcgtctg actttgtctaagccacaaccagtgaagaaccgaactgcaagaccttttggcactcaatcgctaactaaaatcctctcacc agcagagaagagcccagaggtggagattcttccaccacccacctatgcagaaacattttccagccctcctccggtgacta gggtcaggtcacctcctgcttactcagcactgtatcctagtcaagaacagaaaatcctggttccatctgaagctaggtct aaagacagcagcccaggacctcaattcagagagaacaaagcaccatctccagataaaacaggcattctagaggaatctgc agcccgcagaacagctaagaagtccatgttcacctttgttgagaagccaaaaatgggtcctaatccagatcttttgaatt tagtacagacagcagacaatagaaagaagcagaaaggacaaggaggaccatttcctgaagatgaatcatttgcattgggt gcagatgcctctaactttctaactgaaggcagatcattagatgtaccaactcagtcccttggagatcctccaccagaatg gtcttcatgtttaagatcaccaaaaatacagcctaaacctaaaataagctctaaccaaagcctttcagaggcgaaaggaa agggggcagaactatttgccaagaggcaatcaagaatgcagaagtacatcattgaagccccatcacatccagatatagca agatcaccttcacctactatgtctcttcctccatcctggaagtatacttcagaaactcatctctcccctatggcattcca accagcactcagaagtccatcaagatctccaaaaggtcctcgtgcatctttctacaacagcaatttggcagaaagtgagc tctccaaaaaagagttggggatctccaagcaacaaccttaccaacttcactcttccttttttgttcgttccccagtcaaa gagcccatgagatctgtagtccctgaagggggttatgtgacacaggcttcttcctttacttcatccttggtaccttctcc tctgttgaaatcacctgcccagtccagcccaagcagaacattgcctgccctctttgctccgttacctggaaacgtatttc cattacagaagatcagagcaaatgctgaaacatcaccggaaggatctttcgattactcttctaaaattttgtctccaaga gctaaaggagtattccaagctccaagaccatcttactccaccaagaatgcagggattgagcctcaggaaagaaaagcatc cctgcctgcctccccgacatggaccccacagctgataagacgacagtccagcagcatagagggctggatgagcccagccc aaactccagaatctgaggatggacttgttgaagtctttcgagcagcccatgttatgactccacctcctcccatgtctcca tcctggagcgaaaggtctctgtccccatttcgacaggagattgaccaaaagtccagccgacagatgcagatggacagttt ccagtcggactaatcaaaataaattttcttccaagcagtttttatgtggtaacaaaaaaaaaaaaagaatggaagaagca gtgggaacatatagaaggaataaaaattgaagatggtttcactttg |
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Transcript ID | habu1_s4038_g13268.t2 |
Definition | - |
>habu1_s4038_g13268.t2 atggagaatagatccacaccctcttccttgtgatgggctttagaggaagcactgctgtttctcccacttccaggcaatat ccaagaagagttgaaaattgcaaagaattttcttctgaagaagaacagctctgccaagcactgaatattatccaacaaga ggcaaaatgctaaaaacgaccttacaaccaccttgtctccaacctcagtccaactttgcaggctccggcagagctgaccc aaatcctcacattattaagaaatctaaggttggccctgcagaaggcaaaagctatttggcaaggctgcaaggaacgggaa acgatagtagccatggagagcaagtaaggaaagagtcagctggagaaaatctccagaaggaaacttggagagccaatggg aatgtcctcccccgcaagagcaatgacagcaggccggtgtccaatgagaaacgaggagactctccgtggcctgtttctga tgcgatggatcctgggattagcaacagggatgatcaaagtcaagactggaaagtggtgaaagtgaaacgagttctgcttt ctcctgccgaagaacctcggaaagcgaatttctccaggagtgcaagcttacgtaagcagcgagtgaatgcattcacctta ggagccccaaagccaaccaacccagatcgagtagctgcggagaacgacctcaaagctatcactcacccttgcactctgag ccatggggaggaatcgcctctgaagcagactccgaaacaaaaccaggagctgaacgcttcagtctgcgtcaataattttg gacgctgggggcaaaaagtcaccatggaaagatatgaggaggatctggatattccagaggaagaatttcagcagatccct ctcagtgtataccttaaagagaatacagggacagcttcaaccaatggaatacatgaacctctcactgagtttggaaaagt gcctatggttgagcaaggatcaattatgggcaatatagaaaacatcccagctaagactgaggatgaggctacccctaaca ttgagaaaaaagataccattcttgaaaaagaacttgagaaaaacaacaacatccctgacaaagatctgtacgcagctgtt attgacagggagaataatattgtcctcagcaagacaccaagtgaaccaatcattgacagaaaggaaaatggagagttgcc ctgcatggaacaggatgagcagtactgtgaagtgcgtctgactttgtctaagccacaaccagtgaagaaccgaactgcaa gaccttttggcactcaatcgctaactaaaatcctctcaccagcagagaagagcccagaggtggagattcttccaccaccc acctatgcagaaacattttccagccctcctccggtgactagggtcaggtcacctcctgcttactcagcactagagaacaa agcaccatctccagataaaacaggcattctagaggaatctgcagcccgcagaacagctaagaagtccatgttcacctttg ttgagaagccaaaaatgggtcctaatccagatcttttgaatttagtacagacagcagacaatagaaagaagcagaaagga caaggaggaccatttcctgaagatgaatcatttgcattgggtgcagatgcctctaactttctaactgaaggcagatcatt agataagatcagagcaaatgctgaaacatcaccggaaggatctttcgattactcttctaaaattttgtctccaagagcta aaggagtattccaagctccaagaccatcttactccaccaagaatgcagggattgagcctcaggaaagaaaagcatccctg cctgcctccccgacatggaccccacagctgataagacgacagtccagcagcatagagggctggatgagcccagcccaaac tccagaatctgaggatggacttgttgaagtctttcgagcagcccatgttatgactccacctcctcccatgtctccatcct ggagcgaaaggtctctgtccccatttcgacaggagattgaccaaaagtccagccgacagatgcagatggacagtttccag tcggactaatcaaaataaattttcttccaagcagtttttatgtggtaacaaaaaaaaaaaaagaatggaagaagcagtgg gaacatatagaaggaataaaaattgaagatggtttcactttg |
Protein
Protein ID | habu1_s4038_g13268.t1 |
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Definition | - |
>habu1_s4038_g13268.t1 MLKTTLQPPCLQPQSNFAGSGRADPNPHIIKKSKVGPAEGKSYLARLQGTGNDSSHGEQVRKESAGENLQKETWRANGNV LPRKSNDSRPVSNEKRGDSPWPVSDAMDPGISNRDDQSQDWKVVKVKRVLLSPAEEPRKANFSRSASLSETELKEAKARS QRIVAQLTNPPSSNSKGVLLFHRRKQRVNAFTLGAPKPTNPDRVAAENDLKAITHPCTLSHGEESPLKQTPKQNQELNAS VCVNNFGRWGQKVTMERYEEDLGVEHPLDNAQGLLWNKEKNETILYSTNPTSSKDIPEEEFQQIPLSVYLKENTGTASTN GIHEPLTEFGKVPMVEQGSIMGNIENIPAKTEDEATPNIEKKDTILEKELYLLHMDEENNILDKEPYLPIGSEKNNNIPD KDLYAAVIDRENNIVLSKTPSEPIIDRKENGELPCMEQDELVTENENIFPTADTEKATDVCSNETSTQNHRQYCEVRLTL SKPQPVKNRTARPFGTQSLTKILSPAEKSPEVEILPPPTYAETFSSPPPVTRVRSPPAYSALYPSQEQKILVPSEARSKD SSPGPQFRENKAPSPDKTGILEESAARRTAKKSMFTFVEKPKMGPNPDLLNLVQTADNRKKQKGQGGPFPEDESFALGAD ASNFLTEGRSLDVPTQSLGDPPPEWSSCLRSPKIQPKPKISSNQSLSEAKGKGAELFAKRQSRMQKYIIEAPSHPDIARS PSPTMSLPPSWKYTSETHLSPMAFQPALRSPSRSPKGPRASFYNSNLAESELSKKELGISKQQPYQLHSSFFVRSPVKEP MRSVVPEGGYVTQASSFTSSLVPSPLLKSPAQSSPSRTLPALFAPLPGNVFPLQKIRANAETSPEGSFDYSSKILSPRAK GVFQAPRPSYSTKNAGIEPQERKASLPASPTWTPQLIRRQSSSIEGWMSPAQTPESEDGLVEVFRAAHVMTPPPPMSPSW SERSLSPFRQEIDQKSSRQMQMDSFQSD |
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Protein ID | habu1_s4038_g13268.t2 |
Definition | - |
>habu1_s4038_g13268.t2 MLKTTLQPPCLQPQSNFAGSGRADPNPHIIKKSKVGPAEGKSYLARLQGTGNDSSHGEQVRKESAGENLQKETWRANGNV LPRKSNDSRPVSNEKRGDSPWPVSDAMDPGISNRDDQSQDWKVVKVKRVLLSPAEEPRKANFSRSASLRKQRVNAFTLGA PKPTNPDRVAAENDLKAITHPCTLSHGEESPLKQTPKQNQELNASVCVNNFGRWGQKVTMERYEEDLDIPEEEFQQIPLS VYLKENTGTASTNGIHEPLTEFGKVPMVEQGSIMGNIENIPAKTEDEATPNIEKKDTILEKELEKNNNIPDKDLYAAVID RENNIVLSKTPSEPIIDRKENGELPCMEQDEQYCEVRLTLSKPQPVKNRTARPFGTQSLTKILSPAEKSPEVEILPPPTY AETFSSPPPVTRVRSPPAYSALENKAPSPDKTGILEESAARRTAKKSMFTFVEKPKMGPNPDLLNLVQTADNRKKQKGQG GPFPEDESFALGADASNFLTEGRSLDKIRANAETSPEGSFDYSSKILSPRAKGVFQAPRPSYSTKNAGIEPQERKASLPA SPTWTPQLIRRQSSSIEGWMSPAQTPESEDGLVEVFRAAHVMTPPPPMSPSWSERSLSPFRQEIDQKSSRQMQMDSFQSD |