Gene
| Gene Model ID | habu1_s4038_g13268 |
|---|---|
| Locus | habu1_scaffold4038 : 94603 ... 175465 : - |
| To GenomeBrowser | habu1_scaffold4038:94603..175465 |
| Genes list of scaffold | habu1_scaffold4038 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| synaptopodin isoform x1 | GO:0003779 GO:0032233 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4038_g13268.t2 | gi|591354410|ref|XP_007071561.1| | PREDICTED: synaptopodin [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.1 |
| Venom grand-1 | 13.9 |
| Pit, infrared sensing | 5.7 |
| Nose | 0.8 |
| Brain-1 | 6.0 |
| Eye | 4.1 |
| fetal fibroblast | 15.4 |
| venom gland-2 | 2.2 |
| Brain-2 | 3.7 |
| Spleen | 1.8 |
| Lung | 1.2 |
| Liver | 0.9 |
| Kidney | 1.4 |
| Pancreas | 0.7 |
| Small intestine | 3.7 |
| Large intestine | 2.3 |
| Stomach | 1.2 |
| heart | 2.3 |
| ovary | 1.5 |
| cheek muscle | 236.5 |
Transcript
| Transcript ID | habu1_s4038_g13268.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13268.t1 atggagaatagatccacaccctcttccttgtgatgggctttagaggaagcactgctgtttctcccacttccaggcaatat ccaagaagagttgaaaattgcaaagaattttcttctgaagaagaacagctctgccaagcactgaatattatccaacaaga ggcaaaatgctaaaaacgaccttacaaccaccttgtctccaacctcagtccaactttgcaggctccggcagagctgaccc aaatcctcacattattaagaaatctaaggttggccctgcagaaggcaaaagctatttggcaaggctgcaaggaacgggaa acgatagtagccatggagagcaagtaaggaaagagtcagctggagaaaatctccagaaggaaacttggagagccaatggg aatgtcctcccccgcaagagcaatgacagcaggccggtgtccaatgagaaacgaggagactctccgtggcctgtttctga tgcgatggatcctgggattagcaacagggatgatcaaagtcaagactggaaagtggtgaaagtgaaacgagttctgcttt ctcctgccgaagaacctcggaaagcgaatttctccaggagtgcaagcttgtctgaaacagagctgaaggaagcaaaagca aggagccaaaggattgttgctcagctgacaaatccaccaagttccaattccaaaggggtcctgttgtttcacagacgtaa gcagcgagtgaatgcattcaccttaggagccccaaagccaaccaacccagatcgagtagctgcggagaacgacctcaaag ctatcactcacccttgcactctgagccatggggaggaatcgcctctgaagcagactccgaaacaaaaccaggagctgaac gcttcagtctgcgtcaataattttggacgctgggggcaaaaagtcaccatggaaagatatgaggaggatctgggtgtgga acatcctctagataacgctcagggccttctgtggaataaggaaaagaatgagacaattctttattcaacaaacccaacat cctctaaagatattccagaggaagaatttcagcagatccctctcagtgtataccttaaagagaatacagggacagcttca accaatggaatacatgaacctctcactgagtttggaaaagtgcctatggttgagcaaggatcaattatgggcaatataga aaacatcccagctaagactgaggatgaggctacccctaacattgagaaaaaagataccattcttgaaaaagaactgtatc ttctgcatatggatgaggaaaataatattctcgataaagaaccatatctacccataggtagtgagaaaaacaacaacatc cctgacaaagatctgtacgcagctgttattgacagggagaataatattgtcctcagcaagacaccaagtgaaccaatcat tgacagaaaggaaaatggagagttgccctgcatggaacaggatgagttggtcactgaaaatgagaacatttttcccactg ctgacactgaaaaagccactgatgtatgttctaatgaaaccagcacacaaaatcataggcagtactgtgaagtgcgtctg actttgtctaagccacaaccagtgaagaaccgaactgcaagaccttttggcactcaatcgctaactaaaatcctctcacc agcagagaagagcccagaggtggagattcttccaccacccacctatgcagaaacattttccagccctcctccggtgacta gggtcaggtcacctcctgcttactcagcactgtatcctagtcaagaacagaaaatcctggttccatctgaagctaggtct aaagacagcagcccaggacctcaattcagagagaacaaagcaccatctccagataaaacaggcattctagaggaatctgc agcccgcagaacagctaagaagtccatgttcacctttgttgagaagccaaaaatgggtcctaatccagatcttttgaatt tagtacagacagcagacaatagaaagaagcagaaaggacaaggaggaccatttcctgaagatgaatcatttgcattgggt gcagatgcctctaactttctaactgaaggcagatcattagatgtaccaactcagtcccttggagatcctccaccagaatg gtcttcatgtttaagatcaccaaaaatacagcctaaacctaaaataagctctaaccaaagcctttcagaggcgaaaggaa agggggcagaactatttgccaagaggcaatcaagaatgcagaagtacatcattgaagccccatcacatccagatatagca agatcaccttcacctactatgtctcttcctccatcctggaagtatacttcagaaactcatctctcccctatggcattcca accagcactcagaagtccatcaagatctccaaaaggtcctcgtgcatctttctacaacagcaatttggcagaaagtgagc tctccaaaaaagagttggggatctccaagcaacaaccttaccaacttcactcttccttttttgttcgttccccagtcaaa gagcccatgagatctgtagtccctgaagggggttatgtgacacaggcttcttcctttacttcatccttggtaccttctcc tctgttgaaatcacctgcccagtccagcccaagcagaacattgcctgccctctttgctccgttacctggaaacgtatttc cattacagaagatcagagcaaatgctgaaacatcaccggaaggatctttcgattactcttctaaaattttgtctccaaga gctaaaggagtattccaagctccaagaccatcttactccaccaagaatgcagggattgagcctcaggaaagaaaagcatc cctgcctgcctccccgacatggaccccacagctgataagacgacagtccagcagcatagagggctggatgagcccagccc aaactccagaatctgaggatggacttgttgaagtctttcgagcagcccatgttatgactccacctcctcccatgtctcca tcctggagcgaaaggtctctgtccccatttcgacaggagattgaccaaaagtccagccgacagatgcagatggacagttt ccagtcggactaatcaaaataaattttcttccaagcagtttttatgtggtaacaaaaaaaaaaaaagaatggaagaagca gtgggaacatatagaaggaataaaaattgaagatggtttcactttg |
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| Transcript ID | habu1_s4038_g13268.t2 |
| Definition | - |
>habu1_s4038_g13268.t2 atggagaatagatccacaccctcttccttgtgatgggctttagaggaagcactgctgtttctcccacttccaggcaatat ccaagaagagttgaaaattgcaaagaattttcttctgaagaagaacagctctgccaagcactgaatattatccaacaaga ggcaaaatgctaaaaacgaccttacaaccaccttgtctccaacctcagtccaactttgcaggctccggcagagctgaccc aaatcctcacattattaagaaatctaaggttggccctgcagaaggcaaaagctatttggcaaggctgcaaggaacgggaa acgatagtagccatggagagcaagtaaggaaagagtcagctggagaaaatctccagaaggaaacttggagagccaatggg aatgtcctcccccgcaagagcaatgacagcaggccggtgtccaatgagaaacgaggagactctccgtggcctgtttctga tgcgatggatcctgggattagcaacagggatgatcaaagtcaagactggaaagtggtgaaagtgaaacgagttctgcttt ctcctgccgaagaacctcggaaagcgaatttctccaggagtgcaagcttacgtaagcagcgagtgaatgcattcacctta ggagccccaaagccaaccaacccagatcgagtagctgcggagaacgacctcaaagctatcactcacccttgcactctgag ccatggggaggaatcgcctctgaagcagactccgaaacaaaaccaggagctgaacgcttcagtctgcgtcaataattttg gacgctgggggcaaaaagtcaccatggaaagatatgaggaggatctggatattccagaggaagaatttcagcagatccct ctcagtgtataccttaaagagaatacagggacagcttcaaccaatggaatacatgaacctctcactgagtttggaaaagt gcctatggttgagcaaggatcaattatgggcaatatagaaaacatcccagctaagactgaggatgaggctacccctaaca ttgagaaaaaagataccattcttgaaaaagaacttgagaaaaacaacaacatccctgacaaagatctgtacgcagctgtt attgacagggagaataatattgtcctcagcaagacaccaagtgaaccaatcattgacagaaaggaaaatggagagttgcc ctgcatggaacaggatgagcagtactgtgaagtgcgtctgactttgtctaagccacaaccagtgaagaaccgaactgcaa gaccttttggcactcaatcgctaactaaaatcctctcaccagcagagaagagcccagaggtggagattcttccaccaccc acctatgcagaaacattttccagccctcctccggtgactagggtcaggtcacctcctgcttactcagcactagagaacaa agcaccatctccagataaaacaggcattctagaggaatctgcagcccgcagaacagctaagaagtccatgttcacctttg ttgagaagccaaaaatgggtcctaatccagatcttttgaatttagtacagacagcagacaatagaaagaagcagaaagga caaggaggaccatttcctgaagatgaatcatttgcattgggtgcagatgcctctaactttctaactgaaggcagatcatt agataagatcagagcaaatgctgaaacatcaccggaaggatctttcgattactcttctaaaattttgtctccaagagcta aaggagtattccaagctccaagaccatcttactccaccaagaatgcagggattgagcctcaggaaagaaaagcatccctg cctgcctccccgacatggaccccacagctgataagacgacagtccagcagcatagagggctggatgagcccagcccaaac tccagaatctgaggatggacttgttgaagtctttcgagcagcccatgttatgactccacctcctcccatgtctccatcct ggagcgaaaggtctctgtccccatttcgacaggagattgaccaaaagtccagccgacagatgcagatggacagtttccag tcggactaatcaaaataaattttcttccaagcagtttttatgtggtaacaaaaaaaaaaaaagaatggaagaagcagtgg gaacatatagaaggaataaaaattgaagatggtttcactttg |
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Protein
| Protein ID | habu1_s4038_g13268.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13268.t1 MLKTTLQPPCLQPQSNFAGSGRADPNPHIIKKSKVGPAEGKSYLARLQGTGNDSSHGEQVRKESAGENLQKETWRANGNV LPRKSNDSRPVSNEKRGDSPWPVSDAMDPGISNRDDQSQDWKVVKVKRVLLSPAEEPRKANFSRSASLSETELKEAKARS QRIVAQLTNPPSSNSKGVLLFHRRKQRVNAFTLGAPKPTNPDRVAAENDLKAITHPCTLSHGEESPLKQTPKQNQELNAS VCVNNFGRWGQKVTMERYEEDLGVEHPLDNAQGLLWNKEKNETILYSTNPTSSKDIPEEEFQQIPLSVYLKENTGTASTN GIHEPLTEFGKVPMVEQGSIMGNIENIPAKTEDEATPNIEKKDTILEKELYLLHMDEENNILDKEPYLPIGSEKNNNIPD KDLYAAVIDRENNIVLSKTPSEPIIDRKENGELPCMEQDELVTENENIFPTADTEKATDVCSNETSTQNHRQYCEVRLTL SKPQPVKNRTARPFGTQSLTKILSPAEKSPEVEILPPPTYAETFSSPPPVTRVRSPPAYSALYPSQEQKILVPSEARSKD SSPGPQFRENKAPSPDKTGILEESAARRTAKKSMFTFVEKPKMGPNPDLLNLVQTADNRKKQKGQGGPFPEDESFALGAD ASNFLTEGRSLDVPTQSLGDPPPEWSSCLRSPKIQPKPKISSNQSLSEAKGKGAELFAKRQSRMQKYIIEAPSHPDIARS PSPTMSLPPSWKYTSETHLSPMAFQPALRSPSRSPKGPRASFYNSNLAESELSKKELGISKQQPYQLHSSFFVRSPVKEP MRSVVPEGGYVTQASSFTSSLVPSPLLKSPAQSSPSRTLPALFAPLPGNVFPLQKIRANAETSPEGSFDYSSKILSPRAK GVFQAPRPSYSTKNAGIEPQERKASLPASPTWTPQLIRRQSSSIEGWMSPAQTPESEDGLVEVFRAAHVMTPPPPMSPSW SERSLSPFRQEIDQKSSRQMQMDSFQSD |
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| Protein ID | habu1_s4038_g13268.t2 |
| Definition | - |
>habu1_s4038_g13268.t2 MLKTTLQPPCLQPQSNFAGSGRADPNPHIIKKSKVGPAEGKSYLARLQGTGNDSSHGEQVRKESAGENLQKETWRANGNV LPRKSNDSRPVSNEKRGDSPWPVSDAMDPGISNRDDQSQDWKVVKVKRVLLSPAEEPRKANFSRSASLRKQRVNAFTLGA PKPTNPDRVAAENDLKAITHPCTLSHGEESPLKQTPKQNQELNASVCVNNFGRWGQKVTMERYEEDLDIPEEEFQQIPLS VYLKENTGTASTNGIHEPLTEFGKVPMVEQGSIMGNIENIPAKTEDEATPNIEKKDTILEKELEKNNNIPDKDLYAAVID RENNIVLSKTPSEPIIDRKENGELPCMEQDEQYCEVRLTLSKPQPVKNRTARPFGTQSLTKILSPAEKSPEVEILPPPTY AETFSSPPPVTRVRSPPAYSALENKAPSPDKTGILEESAARRTAKKSMFTFVEKPKMGPNPDLLNLVQTADNRKKQKGQG GPFPEDESFALGADASNFLTEGRSLDKIRANAETSPEGSFDYSSKILSPRAKGVFQAPRPSYSTKNAGIEPQERKASLPA SPTWTPQLIRRQSSSIEGWMSPAQTPESEDGLVEVFRAAHVMTPPPPMSPSWSERSLSPFRQEIDQKSSRQMQMDSFQSD |
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